Environmental Costs of Government-Sponsored Agrarian Settlements in Brazilian Amazonia

Brazil has presided over the most comprehensive agrarian reform frontier colonization program on Earth, in which ~1.2 million settlers have been translocated by successive governments since the 1970’s, mostly into forested hinterlands of Brazilian Amazonia. These settlements encompass 5.3% of this ~5 million km² region, but have contributed with 13.5% of all land conversion into agropastoral land uses. The Brazilian Federal Agrarian Agency (INCRA) has repeatedly claimed that deforestation in these areas largely predates the sanctioned arrival of new settlers. Here, we quantify rates of natural vegetation conversion across 1911 agrarian settlements allocated to 568 Amazonian counties and compare fire incidence and deforestation rates before and after the official occupation of settlements by migrant farmers. The timing and spatial distribution of deforestation and fires in our analysis provides irrefutable chronological and spatially explicit evidence of agropastoral conversion both inside and immediately outside agrarian settlements over the last decade. Deforestation rates are strongly related to local human population density and road access to regional markets. Agrarian settlements consistently accelerated rates of deforestation and fires, compared to neighboring areas outside settlements, but within the same counties. Relocated smallholders allocated to forest areas undoubtedly operate as pivotal agents of deforestation, and most of the forest clearance occurs in the aftermath of government-induced migration.     

The primate community of Cachoeira (Brazilian Amazonia): a model to decipher ecological partitioning among extinct species

Dental microwear analysis is conducted on a community of platyrrhine primates from South America. This analysis focuses on the primate community of Cachoeira Porteira (Para, Brazil), in which seven sympatric species occur: Alouatta seniculus, Ateles paniscus, Cebus apella, Chiropotes satanas, Pithecia Pithecia, Saguinus midas, and Saimiri sciureus. Shearing quotients are also calculated for each taxon of this primate community. Dental microwear results indicate significant differences between taxa, but are somewhat insufficient when it comes to discriminating between ecologically similar taxa. The primates of Cachoeira Porteira all incorporate a certain amount of fruit in their diet, entailing a definite amount of inter-specific competition as they must share food resources. Alouatta is the most folivorous taxon of this community, which is corroborated by dental microwear analysis. Ateles, although of a similar size to Alouatta, limits inter-specific competition by incorporating more fruit in its diet. Cebus has a very diverse omnivorous diet, which is highlighted in this study, as it compares to both fruit and leaf eating taxa. In some cases, microwear results need to be supplemented by other methods. For example, dental microwear seems insufficient to distinguish between Pithecia and Chiropotes, which eat foods with similar physical properties. However, other methods (i.e. shearing quotients and body mass) provide enough complimentary information to be able to highlight differences between the two taxa. On the other hand, dental microwear can highlight differences between primates which have similar diets, such as Saimiri and Saguinus. In this case, differences could be due to other exogenous factors.     

Tick fauna from two locations in the Brazilian savannah

The Cerrado is Brazil’s tropical savannah, which is arguably under greater threat than the Amazon rainforest. The Cerrado Biome of tropical South America covers about 2 million km² and is considered a biodiversity hot spot which means that it is especially rich in endemic species and particularly threatened by human activities. The Cerrado is increasingly exposed to agricultural activities which enhance the likelihood of mixing parasites from rural, urban and wildlife areas. Information about ticks from the Cerrado biome is scarce. In this report tick species free-living, on domestic animals and on a few wild animals in two farms in the Cerrado biome (Nova Crixás and Araguapaz municipalities, Goiás State, Brazil) are described. Amblyomma cajennense was the first and Amblyomma parvum the second host-seeking tick species found. Only two other tick species were found free-living: one Amblyomma nodosum and three Amblyomma naponense nymphs. Cattle were infested with Boophilus microplus and A. cajennense. Buffalos were infested with B. microplus and A. parvum. Dogs were infested with A. cajennense, Amblyomma ovale, A. parvum and Rhipicephalus sanguineus ticks. Anocentor nitens, B. microplus, A. cajennense, and A. parvum were found on horses. Amblyomma auricularium were found attached to nine-banded armadillos and Amblyomma rotundatum to red-footed tortoise, cururu toads and a rattlesnake. The latter was also infested with an adult A. cajennense. No tick was found on a goat, a tropical rat snake and a yellow armadillo. Among the observations the infestation of several domestic animals with A. parvum seems be the main feature. It suggests that this species might become a pest. However, the life cycle of A. parvum in nature, as well as its disease vectoring capacity, are largely unknown. It would be important to determine if it is a species expanding its geographic range by adaptation to new hosts or if it has been maintained in high numbers at definite locations by specific and still undetermined conditions. A higher prevalence of A. cajennense in most Brazilian biomes, with the exception of rainforests, was already shown before. Thus this species is favored by deforestation and is an important research target as it is the most common vector associated with the Brazilian spotted fever.     

New and interesting species of Hymenochaetaceae from the Brazilian Amazonia

Coltricia globispora sp. nov. is described as new based on specimens collected in the Parque Natural Municipal de Porto Velho, in the state of Rondônia, Brazilian Amazonia. It is characterized by small pores (7–8 per mm), monomitic hyphal system, and globose, smooth and guttulate basidiospores (5.5–6.6 (?7) μm). Phellinus griseoporus has been found for the first time in Brazil, and Cyclomyces iodinus, P. merrillii, P. membranaceus and P. umbrinellus in the Brazilian Amazonia. Coltricia cinnamomea, P. calcitratus and Phylloporia chrysites are new occurrences to the state Rondônia, while C. hamata and Phylloporia spathulata to the state of Pará. The knowledge about Hymenochaetaceae in the Brazilian Amazonia is briefly discussed, and a key to the neotropical species of Coltricia is provided.     

Guaraná (Paullinia cupana) as a commercial crop in Brazilian Amazonia

Guaraná (Paullinia cupana) is a woody vine or sprawling shrub native to the central Amazon Basin. The seeds are commercially produced on some 6,000 ha in the state of Amazonas near Manaus. The principal article of commerce is an amber-colored, carbonated soft drink. It is also widely used as a high caffeine stimulant and in local medicines. The plant is monoecious and is damaged by a number of diseases, the most severe being anthracnose. Prospects are excellent for greatly expanded international markets.     

Secondary forests on anthropogenic soils in Brazilian Amazonia conserve agrobiodiversity

Throughout Brazilian Amazonia anthropogenic soils that are the product of pre-Columbian settlements are called Terra Preta de índio (Indian Dark Earths, TPI). These soils are dramatically different from surrounding soils due to long-term human activity, but there is little information about how secondary forest succession is affected by these differences. We tested if community structure (density, richness and basal area), floristic composition and domesticated species’ richness and density were similar between TPI and non-anthropogenic soils (NAS) in 52 25 × 10 m secondary forest plots in different successional stages near three traditional communities along the middle Madeira River, Central Amazonia. We sampled 858 woody individuals on TPI (77 domesticated) and 1095 on NAS (27 domesticated); 550 understory palms on TPI (169 domesticated) and 778 on NAS (123 domesticated). We found 179 species on TPI (10 domesticated), 190 on NAS (8 domesticated), and 74 (25%) in both environments. Although community structure on TPI and NAS was fairly similar, they showed significantly distinctive floristic compositions, both for woody individuals and understory palms. The density and richness of domesticated species was significantly higher on TPI than on NAS for woody individuals, but not for palms. The intimate long-term association of TPI with human activity has lead to the formation of distinct secondary forests and has favored the concentration of domesticated populations of crop species. Hence, secondary forests on anthropogenic soils concentrate agrobiodiversity, offering advantages for in situ conservation of genetic resources, and are unique ecosystems that should be considered in conservation efforts.     

The impact of a run-of-the-river hydroelectric dam on a non-volant small-mammal assemblage in Brazilian Amazonia

There are few scientific studies evaluating the impact of the loss of wetlands on the banks of tropical rivers on assemblages of small non-flying mammals. To understand the possible deleterious effects of hydroelectric construction in tropical forests on this group of mammals, we used data from 2 years of monitoring carried out during the period before the filling of a hydroelectric plant reservoir in the Brazilian Amazon, and related them to vegetation, soil and topography. We captured 659 individuals of 20 small-mammal species. The species assemblage composition in the flooded areas was a subset of species that occurred in both floodable and non-floodable areas, and only one species was captured exclusively in the flooded area. Species composition was influenced by the proportion of sand, by soil nutrient concentration and distance from water bodies. We conclude that there is no evidence that the flooding of low-lying areas along the Madeira River would negatively affect the assemblage of non-flying small mammals in the short term because the remaining areas have similar assemblages of small mammals as those destined for flooding. Whether the area lost will be important for population dynamics will depend on the conservation of the remaining areas.     

Carbon stock loss from deforestation through 2013 in Brazilian Amazonia

The largest carbon stock in tropical vegetation is in Brazilian Amazonia. In this ~5 million km² area, over 750 000 km² of forest and ~240 000 km² of nonforest vegetation types had been cleared through 2013. We estimate current carbon stocks and cumulative gross carbon loss from clearing of premodern vegetation in Brazil's ‘Legal Amazonia’ and ‘Amazonia biome’ regions. Biomass of ‘premodern’ vegetation (prior to major increases in disturbance beginning in the 1970s) was estimated by matching vegetation classes mapped at a scale of 1 : 250 000 and 29 biomass means from 41 published studies for vegetation types classified as forest (2317 1‐ha plots) and as either nonforest or contact zones (1830 plots and subplots of varied size). Total biomass (above and below‐ground, dry weight) underwent a gross reduction of 18.3% in Legal Amazonia (13.1 Pg C) and 16.7% in the Amazonia biome (11.2 Pg C) through 2013, excluding carbon loss from the effects of fragmentation, selective logging, fires, mortality induced by recent droughts and clearing of forest regrowth. In spite of the loss of carbon from clearing, large amounts of carbon were stored in stands of remaining vegetation in 2013, equivalent to 149 Mg C ha^?1 when weighted by the total area covered by each vegetation type in Legal Amazonia. Native vegetation in Legal Amazonia in 2013 originally contained 58.6 Pg C, while that in the Amazonia biome contained 56 Pg C. Emissions per unit area from clearing could potentially be larger in the future because previously cleared areas were mainly covered by vegetation with lower mean biomass than the remaining vegetation. Estimates of original biomass are essential for estimating losses to forest degradation. This study offers estimates of cumulative biomass loss, as well as estimates of premodern carbon stocks that have not been represented in recent estimates of deforestation impacts.     

Geophagy at termitaria by bearded sakis (Chiropotes satanas) in Southeastern Brazilian Amazonia

Geophagy is rare in primates, but has been recorded in a variety of platyrrhine genera. The first observation of geophagy in bearded sakis (Chiropotes satanas) is reported here. Two bouts were recorded during long-term monitoring of a free-ranging group inhabiting a small island in a reservoir in eastern Brazilian Amazonia. On both occasions, soil was obtained systematically from a termitarium in the crown of an Eschweilera coriacea tree. Both events occurred during the late dry season. Although there is no evidence of any significant shift in foraging behavior during this period, it is possible that soil ingested provided an essential mineral supplement to a diet limited by the small size of the island.     

Peccary movements as determinants of the movements of large cats in Brazilian Amazonia

As part of a study on the ecology of a community of middle-sized and larger mammals in a seasonally dry forest in the far north of the Brazilian Amazonia, peccaries (the white-lipped peccary Tayassu pecari and the collared peccary Tayassu tajacu ) and large cats (the jaguar Panthera onca and the puma Puma concolor ) were regularly surveyed for 1 year. Diurnal and nocturnal surveys were carried out by the line-transect method, in five different forest types along a 10 km transect, and data were collected on their use of the forest types. The peccary herds and the large cats were sighted regularly throughout the study period, but more frequently over the dry season in the high-ground forests in eastern Maracá. Over the dry season, when food was scarce except in the Buritizals, T. pecari , closely followed by a P. onca , monopolized the Buritizal forests, whereas T. tajacu , followed by a P. concolor , exploited the other available high-ground forest types. Fluctuations in food supply regulated the dynamics of the two species of peccaries, which ultimately determined the whereabouts of the large cat predators. This may be a counter-strategy to survive in an extremely seasonal environment where food, more than any other variable, is the key determinant of the survival of both peccaries and large cats.     

Effect of biomass on assemblages of large mammals in a seasonally dry forest in the Brazilian Amazonia

Aiming to understand the relationship between body mass and abundance, a community of middle-sized and larger mammals was studied in a seasonally dry forest in the far north of the Brazilian Amazonia. Diurnal and nocturnal surveys were carried out by the line-transect method along a 10-km transect. Data were collected on density, biomass, use of forest types, forest strata, diet and feeding strategies by the mammals. Biomass explained animal abundance better than did body mass across the two forest types: Terra Firme forest and mixed forest. There was a statistically significant positive relationship between the biomass of all the 33 mammals studied and group density, as well as between biomass and group size, in both forests. When terrestrial and arboreal mammals, and also different feeding guilds were considered separately, they exhibited very similar results, where biomass alone was positively associated with group density and group size. The slope of the relationships between body mass and group density, body mass and group size, biomass and group density, and biomass and group size varied considerably, with significant scatter around the regression line. Food and food competition shaped the relationship between animal mass and abundance, and this relationship can even vary widely between assemblages. As a result of competition for the available resources, group density increased with increasing biomass.     

Predation of arthropods by southern bearded sakis (Chiropotes satanas) in Eastern Brazilian Amazonia

Bearded sakis are seed predators, but are also known to consume arthropods. This is the first detailed report of arthropod predation in southern bearded sakis (Chiropotes satanas). Two groups were monitored-one in continuous forest, and one on a small island-between January 2003 and February 2004. The arthropod prey included spiders and six insect orders. Island group members spent more time foraging for arthropods (3.8% vs. 2.6% of activity time) but ingested less prey (3.7% vs. 4.6% of feeding time). Arthropods accounted for a small proportion of feeding records in most months, but there were occasional sharp peaks due to the exploitation of temporary agglomerations of insects. In November, arthropods accounted for 26.6% and 14.2% of the feeding records of the mainland and island groups, respectively. The results suggest that bearded sakis actively seek arthropods as a dietary supplement, but that they represent a minor resource during most of the year, even under conditions of intense habitat fragmentation (island group).     

Trends of plant use by humans and nonhuman primates in Amazonia

Analyses of plant use in Amazonia by three species of nonhuman primates reveal a common trend: more primitive plant species are used as food. An identical situation prevails for three indigenous human societies which additionally selected more recently evolved plant species as medicine. One hypothesis to explain the observations is related to the presence of toxic constituents in the more advanced species, in contrast to astringent polyphenols in the more primitive ones. Thus a certain degree of astringency might indicate absence of harmful chemicals, and even stimulate ingestion. © 1996 Wiley-Liss, Inc.     

Microhabitat use by rodent species in a central Brazilian cerrado

We analysed microhabitat use by the rodents Calomys tener, Necromys lasiurus and Thalpomys lasiotis and the factors that may influence their abundances in “murundu” grasslands (open fields with termite mounds) at Aguas Emendadas Ecological Station, Planaltina, Federal District, Brazil. Two grids with 100 sampling points were established and traps were placed at each intersection of the grid, where five microhabitat variables were also measured. Rodents were trapped from June through October 2008. Microhabitat explained 21% of the variation in community structure, with grass density and the number of termite mounds explaining most of the variation. Necromys lasiurus was most often captured in areas with dense grasses, whereas T. lasiotis and C. tener were most often in areas less dense with grasses.     

Microbial diversity of an anoxic zone of a hydroelectric power station reservoir in Brazilian Amazonia

Microbial diversity was evaluated in an anoxic zone of Tucuruí Hydroelectric Power Station reservoir in Brazilian Amazonia using a culture-independent approach by amplifying and sequencing fragments of the 16S rRNA gene using metagenomic DNA as a template. Samples obtained from the photic, aphotic (40 m) and sediment (60 m) layers were used to construct six 16S rDNA libraries containing a total of 1,152 clones. The sediment, aphotic and photic layers presented 64, 33 and 35 unique archaeal operational taxonomic units (OTUs). The estimated richness of these layers was evaluated to be 153, 106 and 79 archaeal OTUs, respectively, using the abundance-based coverage estimator (ACE) and 114, 83 and 77 OTUs using the Chao1 estimator. For bacterial sequences, 114, 69 and 57 OTUs were found in the sediment, aphotic and photic layers, which presented estimated richnesses of 1,414, 522 and 197 OTUs (ACE) and 1,059, 1,014 and 148 OTUs (Chao1), respectively. Phylogenetic analyses of the sequences obtained revealed a high richness of microorganisms which participate in the carbon cycle, namely, methanogenic archaea and methanotrophic proteobacteria. Most sequences obtained belong to non-culturable prokaryotes. The present study offers the first glimpse of the huge microbial diversity of an anoxic area of a man-made lacustrine environment in the tropics.     

Bacterial soil community in a Brazilian sugarcane field

The assessment of bacterial communities in soil gives insight into microbial behavior under prevailing environmental conditions. In this context, we assessed the composition of soil bacterial communities in a Brazilian sugarcane experimental field. The experimental design encompassed plots containing common sugarcane (variety SP80-1842) and its transgenic form (IMI-1 — imazapyr herbicide resistant). Plants were grown in such field plots in a completely randomized design with three treatments, which addressed the factors transgene and imazapyr herbicide application. Soil samples were taken at three developmental stages during plant growth and analyzed using 16S ribosomal RNA (rRNA)-based PCR-denaturing gradient gel electrophoresis (PCR-DGGE) and clone libraries. PCR-DGGE fingerprints obtained for the total bacterial community and specific bacterial groups — Actinobacteria, Alphaproteobacteria and Betaproteobacteria — revealed that the structure of these assemblages did not differ over time and among treatments. Nevertheless, slight differences among 16S rRNA gene clone libraries constructed from each treatment could be observed at particular cut-off levels. Altogether, the libraries encompassed a total of eleven bacterial phyla and the candidate divisions TM7 and OP10. Clone sequences affiliated with the Proteobacteria, Actinobacteria, Firmicutes and Acidobacteria were, in this order, most abundant. Accurate phylogenetic analyses were performed for the phyla Acidobacteria and Verrucomicrobia, revealing the structures of these groups, which are still poorly understood as to their importance for soil functioning and sustainability under agricultural practices.     

Arthropod Predation by a Specialist Seed Predator, the Golden-backed Uacari (Cacajao melanocephalus ouakary, Pitheciidae) in Brazilian Amazonia

Morphological adaptations related to food processing generally reflect those elements of the diet that represent the greatest biomechanical challenge or that numerically dominate the diet. However, in periods of the annual cycle when the availability of such foods is low, items to which a species has low apparent morphological adaptation may be included in the diet. Here we test the responses of a diet-specialist primate to limitations in the supply of the resource it is specialized to exploit. Uacaris are primarily predators of immature seeds, in seasonally flooded forests in Amazonian Brazil, and have dental specializations to open hard-shelled fruits. We investigated the importance of arthropods in the diet of golden-backed uacaris (Cacajao melanocephalus ouakary), examining their seasonal importance in the uacari diet, and the ways C. m. ouakary used to access them. Using scan and ad libitum sampling of feeding and phenology from botanical study plots to assess fruit availability, we conducted an 18-mo study in Jaú National Park, Amazonas State, Brazil. We recorded arthropod predation 298 times, with Cacajao melanocephalus ouakary feeding on 26 invertebrate taxa in ≥11 families and 9 different orders. Uacaris extracted wood-boring beetles dentally from rotting wood and smaller larvae from twigs, stems, and petioles, but this food class did not predominate. This food class (encapsulated foods) constituted 23.4 % of the arthropod records. The majority of arthropod food items were either manually removed from substrates (ants, beetle larvae, caterpillars, fulgorid bugs, grasshoppers, mayflies, spiders, termites, wasps, and a whip-scorpion) or plucked from the air (volant Lepidoptera). Uacaris appeared to avoid toxic caterpillars. Insectivory was most frequent when fruit and seeds were least available. Arthropods seem to be seasonally important to this primate, supplementing or making up for shortfalls in the hard fruits and immature seeds for which uacaris have highly developed dental, and possibly intestinal, adaptations.