Inhibitory Properties of Anilin Dyes

At least four phases of bacterial inhibition have been observed in the case of bacteria exposed to the action of gentian violet and related dyes: cessation of motility; inhibition of reproduction; suspension of animation; and inhibition of sporulation. Anilin dyes may show these four types of inhibition without killing the bacteria on which they are acting. There is no doubt, however, that some of the dyes, notably the acridine group and the basic triphenyl-methanes, are capable of killing some bacteria. The difficulty of distinguishing between death and inhibition of growth has led the writer to use the term “bacteriostasis” to describe the result which dyes produce. In the case of the triphenyl-methane dyes, Gram-positive bacteria are, as a rule, much more susceptible than the Gram-negative.     

The Spectrophotometric Evaluation of Mixtures of Methylene Blue and Trimethyl Thionin

Spectrophotometric analysis affords the most convenient means for determining the proportion of methylene blue and trimethyl thionin (azure B) present in a mixture of these two dyes. The method proposed depends upon the determination of an “absorption ratio.” A suitable ratio for the purpose is that of the extinction coefficient at 640 mμ to that at 670 mμ. On account of the difference in absorption maxima of the two dyes, this ratio increases as the percentage of methylene blue decreases. The ratio value for eleven different mixtures is given and a graph is plotted from this data by means of which the proportions of the two dyes present in any mixture can be calculated from the absorption ratio determined as specified.     

Paper Chromatography for Analysis Of A Dye Mixture

A paper chromatographic method for the identification and separation of stain components is proposed. Using an alkaline butanol-water solvent and the descending technic, a commercial product, known as “Triosin”, believed to consist of three (undetermined) dyes, has been separated into five components.

Three of the components were apparently parts of a typical eosin Y commercial sample, and the other two were orange G and erythrosin B. By means of elution of the components from the paper, followed by spectrophotometric analysis, it was possible to reconstitute a mixture which appeared to be identical with Triosin in spectrophotometric, chromatographic, and histological properties.     

Report from the President

Although the original Commission on Standardization of Biological Stains was first organized in 1921, it was not until 1944 that this was incorporated as an independent, nonprofit organization known as the Biological Stain Commission (see Clark 1974). The certification of dyes, as indicated by special labels purchased by manufacturers or vendors for attachment to the dye containers, originated with the parent organization and has continued to this day. The objectives of the Biological Stain Commission (BSC) are 1) to identify and standardize the content and performance of dyes and dye preparations used in staining biological tissues and products, 2) to issue labels of certification to companies that buy these to inform consumers that their certified dyes meet the specifications of the BSC, 3) to carry out and to support investigations on dyes and their performance, 4) to publish scientific data concerning biological stains and their use, and 5) to maintain, through scientific meetings and correspondence, an active “dialogue” among scientific and industrial personnel concerned with biological stains. The present report summarizes Commission activity and some of the changes that have occurred during the past five years.     

The Application of Dyes in the Cancer Problem

Three fundamental requirements for the problem of developing a differential stain for cancer are discussed: I. the choice of a technic for the microscopic preparation of tissues; II. an analysis of the biological properties peculiar to cancer; and III. various groups of dyes adaptable to such peculiar properties of cancer tissue. Under I the disadvantages of intravitam staining are pointed out and the use of cell suspensions, frozen sections, and fixed material favored. Under II three characteristics of cancer tissue offering possibilities for differential staining are discussed, the cytological structure known as the “plastin reaction”, the histogenic cycle of cancer tissue, and the viability of cancer tissue under anaerobic conditions. Under III modifications of the Giemsa stain are suggested for application to the plastin reaction, specific tissue stains advocated for the use of indicating end points in histogenic cycles, and the vital dyes, congo red and trypan blue, suggested as indicators for the survival of malignant tissues because of the failure of these dyes to permeate living cancer cells.

The angle of approach thruout has been an attempt to avoid unconscious pitfalls inherent in certain microscopic technics, and to substitute analytical methods for the blind trial and error method of routinely applying dye after dye in endless succession.     

A Rapid Method for Mounting Pollen Grains: With Special Regard To Sterility Studies

A method is described for the simultaneous mounting and double staining of mature pollen grains. The medium consists of 50 ml. of glycerol jelly to which 2.5 ml. of methyl green and 2 ml. of phloxine, both in 50% alcoholic solutions, have been added. Prior to the application of the jelly-dye mixture, the pollen is washed with 70% ethanol to remove adhering oils and resins. The staining reaction is differential and permits the rapid classification of pollen grains. The “functional” pollen expands and stains with both dyes whereas the aborted grains remain shrunken and take only the methyl green wall stain. The same reaction functions with orchid seed.     

General Considerations: Methods for the Standardization of Biological Stains: Part I

This is the introduction to a series of papers giving the assay methods employed in the testing of dyes submitted to the Commission on Standardization of Biological Stains. These methods are used in determining whether or not to allow the sale of any particular batch of dye as a certified stain. The present paper takes up general considerations, discussing the relative merits of various analytical methods designed both for qualitative and quantitative analysis. The advantages of determining light “absorption ratios” for qualitative purposes, and of titanous chloride reduction for quantitative purposes are pointed out. It is further indicated that in spite of all the refinements that have yet been made in chemical and optical methods of analysis, great weight must be placed on biological testing in determining the quality of any given sample.     

A Method to Determine the end Point of Decalcification of Hard Tissue and Bone

A method for decalcification end point determination of mineralized tissue is described. The calcium content of the decalcification solution was determined colorimetrically with a “continuous automatic analyzer” with a high degree of accuracy. The end point method used has been tested on two decalcification methods, 5% nitric acid with or without ultrasonic treatment. The results suggest it is possible to quantitate the decalcification process.     

The Determination of Apparent Isoelectric Points of Cell Structures by Staining at Controlled Reactions

The staining reactions at controlled pH-values of various dyes with the nucleus and cytoplasm of Trichonympha collaris under different conditions were investigated. When staining intensity was plotted against pH, it was found that with each dye a different curve was obtained. “Isoelectric points” obtained by superposition of acid and basic dye curves varied for the same material with the dyes employed. It was found that, with the same dye, the curves of staining intensity plotted against pH varied with the buffer system utilized. Moreover, the intensity of staining at any pH was found to vary directly with the concentration of dye and inversely with the concentration of buffer. Various factors modifying staining intensity were studied. In the staining of a protein in buffered solution, it was shown that staining intensity (the index of the concentration of the dye-protein compound) at a given pH-value is dependent upon the interaction of the dye-protein, buffer-protein and dye-buffer systems, and that as the dye or buffer or their concentrations were varied, the resultant “isoelectric points” which were obtained also varied. In view of these facts and of the present lack of knowledge of dyes and dye-protein combinations it would be impossible to determine a true isoelectric point by staining at controlled pH-values without further extensive work on the subject. It follows that no true isoelectric points have hitherto been obtained for nucleus, cytoplasm or other tissue elements by staining at controlled pH.     

Improving Biological Dyes and Stains: Quality Testing Versus Standardization

This paper discusses the impact of both standardization and quality testing of dyes and stains in biology and medicine. After a brief review of why standardized dyes and stains are not presently available commercially, two types of testing and ways of improving dye quality are described. National or international organizations could be established to define standardization of dyes and stains. Standardization would be specifically defined as a list of physico-chemical parameters such as elaborated in this paper. Commercial batches of comparable quality may be labeled by the supplier as “standard dye.” a procedure currently performed by the European Council for Clinical and Laboratory Standardization (ECCLS). Also recommended to improve dye quality is commercial dye testing by independent laboratories with subsequent certification for use. This sort of quality control is currently carried out in the United States by the Biological Stain Commission (BSC). The advantages and disadvantages of both techniques and the use of image analysis for the definition of standards are discussed. A combination of both the BSC testing protocols and the ECCLS standards should be established for extended quality control of biological dyes and stains.     

Evaluation of quantification methods for real-time PCR minor groove binding hybridization probe assays

Real-time PCR data analysis for quantification has been the subject of many studies aimed at the identification of new and improved quantification methods. Several analysis methods have been proposed as superior alternatives to the common variations of the threshold crossing method. Notably, sigmoidal and exponential curve fit methods have been proposed. However, these studies have primarily analyzed real-time PCR with intercalating dyes such as SYBR Green. Clinical real-time PCR assays, in contrast, often employ fluorescent probes whose real-time amplification fluorescence curves differ from those of intercalating dyes. In the current study, we compared four analysis methods related to recent literature: two versions of the threshold crossing method, a second derivative maximum method, and a sigmoidal curve fit method. These methods were applied to a clinically relevant real-time human herpes virus type 6 (HHV6) PCR assay that used a minor groove binding (MGB) Eclipse hybridization probe as well as an Epstein-Barr virus (EBV) PCR assay that used an MGB Pleiades hybridization probe. We found that the crossing threshold method yielded more precise results when analyzing the HHV6 assay, which was characterized by lower signal/noise and less developed amplification curve plateaus. In contrast, the EBV assay, characterized by greater signal/noise and amplification curves with plateau regions similar to those observed with intercalating dyes, gave results with statistically similar precision by all four analysis methods.     

Methodology for the development of a drug library based upon collision-induced fragmentation for the identification of toxicologically relevant drugs in plasma samples

The possibility of creating a robust mass spectral library with use of high-performance liquid chromatography–atmospheric pressure–electrospray ionization (HPLC–AP–ESI) for the identification of drugs misused in cases of clinical toxicology has been examined. Factors reported as influencing the fragmentation induced by “source transport region collision induced dissociation” (CID) have been tested in this study (i.e. solvent, pH, different acids or buffer salts and their concentration, different organic modifiers and the modifier concentration). The tests performed on a few “model drugs” were analysed with use of two different single quadrupole instruments. The large number of mass spectra obtained appears to be affected by the mobile phase conditions to only a minor extent. This also holds for the mass spectra obtained at two different instruments (laboratories). Subsequently breakdown curves have been measured for about 20 randomly chosen drugs by variation of the kinetic energy of their ions in the CID zone through changing the fragmenter voltage. These breakdown curves were used to optimize the fragmenter voltage for each drug. The optimized fragmenter voltages were then applied by use of a variably ramped fragmenter voltage to acquire mass spectra for the library. The chromatographic separations were run on a Zorbax Stable bond column using a 10-mM ammonium formate–acetonitrile gradient method. Spiked blank serum and patient samples with a total of 40 different drugs were extracted with use of a standard basic liquid–liquid extraction (LLE) method. A search of significant peaks in the chromatogram by application of the developed mass spectral library is shown to result in a more than 95% positive identification.     

Antimicrobial dyes and mechanosensitive channels

The search for new and effective antimicrobial agents has never been as important; however, since the discovery of antibiotics, exploring the antimicrobial activity of dyes has been forgotten. Antimicrobial dyes are an untapped resource and have the ability to potentially combat the spread of drug-resistant bacteria either alone or as antimicrobial adjuvants. The mechanosensitive ion channel of large conductance (MscL) is highly conserved and ubiquitous in bacterial species. There is evidence to suggest that at least one triphenylmethane dye acts through the highly conserved MscL channel and combining the two approaches of exploring the mechanism of action of other triphenylmethane dyes or antimicrobial dyes in general and the novel MscL target provides a new opportunity for further exploration.     

A Novel Technique for Viable Cell Determinations

We have developed a simple method to determine cell viability using two fluorescent dyes, Hoechst 33258 and acridine orange. When these dyes are used in combination, dead cells fluoresce brilliant blue and live cells fluoresce green. This method works over a range of dye concentrations (Hoechst 33258, 0.25-2 μg/ml; acridine orange, 1-5.0 μg/ml) and the fluorescence spectra of the two dyes are such that only one set of filters is required to visualize the effects of both dyes simultaneously. It is insensitive to a wide range of exogenous serum concentrations and is read with greater uniformity by different observers.     

A novel technique for viable cell determinations

We have developed a simple method to determine cell viability using two fluorescent dyes, Hoechst 33258 and acridine orange. When these dyes are used in combination, dead cells fluoresce brilliant blue and live cells fluoresce green. This method works over a range of dye concentrations (Hoechst 33258, 0.25-2 micrograms/ml; acridine orange, 1-5.0 micrograms/ml) and the fluorescence spectra of the two dyes are such that only one set of filters is required to visualize the effects of both dyes simultaneously. It is insensitive to a wide range of exogenous serum concentrations and is read with greater uniformity by different observers.     

Behavioural deprivation: A central problem in animal welfare

A key issue in animal welfare is whether keeping animals in conditions where they cannot or do not perform behaviour typical of more naturally-kept members of their species causes them to suffer. Various measures have been used to resolve this issue. The cost an animal is prepared to pay for the opportunity to perform different behaviour can be used as a measure of the importance of that behaviour to the animal. Manipulation of time-budgets is the most reliable method of measuring such costs and of relating “deprivation” to “suffering”.     

Microspectrophotometric Analysis of Accumulation of the Fluorones K-Fluorescein, Rose Bengal and Phloxine Red in Living Plant Cells

Spectrophotometry investigations of dye solutions in different media and of living stained cells from the upper epidermis of the scaleleaf of Allium cepa were carried out with the dyes K-fluorescein, rose Bengal and phloxine red to elucidate the mechanism of the accumulation of these dyes in the cytoplasm, the nucleus and the cell sap. Thin layer chromatography and paper electrophoresis indicate that the K-fluorescein used here contains no detectable contaminants. Besides the main component, rose Bengal contains two components in small quantities with Rf values of 0.64 and 0.57, plus three more components in traces. Besides the two main components (Rf values of 0.83 and 0.73), phloxine red also contains five more components in traces. Electrophoretic investigations reveal that in aqueous solution the fluorones rose Bengal and phloxine red from pH 2.0-11 show a migration toward the anode. K-fluorescein from pH 2.9-10.4 shows a migration toward the anode, but at pH 1.9 a migration toward the cathode. By shaking aqueous solutions of K-fluorescein, rose Bengal and phloxine red at different pH values with different organic solvents, the above used stainings show different spectral absorption curves according to the polarity of the solvent. The position of the absorption maxima and the shape of the absorption curves of these three anionic dyes lead to the conclusion that the staining of the living cytoplasm and nucleus is due to ion accumulation by means of the “ion trap mechanism” within the aqueous phase of the cytoplasm (cytosol) and the nucleus. Adsorption of dye particles in the protein phase of the cytoplasm cannot be excluded. There seems to be a fundamental difference in the vital staining of the protoplasm by anionic and cationic dyes, the latter apparently accumulating as neutral dye molecules in the lipid phase of the protoplasm. The concentration of the dyes used in the living cytoplasm (cytosol) is approximately 0.2-0.05%. During natural and artificial displacement of K-fluorescein from the cytoplasm to the vacuole, it appears that accumulation of the dye within the vacuole is performed through an ion trap mechanism in the form of bivalent ions. Along with natural displacement, it is possible that ion accumulation also occurs in metabolic products.     

Molecular dynamics study of biodegradation of azo dyes via their interactions with AzrC azoreductase

Azo dyes are one of the most important class of dyes, which have been widely used in industries. Because of the environmental pollution of azo dyes, many studies have been performed to study their biodegradation using bacterial systems. In present work, the AzrC of mesophilic gram-positive Bacillus sp. B29 has been considered to study its interaction with five common azo dyes (orange G, acid red 88, Sudan I, orange I, and methyl red). The molecular dynamics simulations have been employed to study the interaction between AzrC and azo dyes. The trajectory was confirmed using root mean square deviation and the root mean square fluctuation analyses. Then, the hydrogen bond and alanine scanning analyses were performed to reveal active site residues. Phe105 (A), Phe125 (B), Phe172 (B), and Pro132 (B) have been found as the most important hydrophobic residues whereas Asn104 (A), Tyr127 (B), and Asn187 (A) have key role in making hydrogen bond. The results of molecular mechanics Poisson–Boltzmann surface area and molecular mechanics generalized Born surface area calculations proved that the hydrophobic azo dyes like Acid red 88 binds more tightly to the AzrC protein. The calculated data suggested MR A 121 (B) I as a potential candidate for improving the AzrC–MR interactions.     

Biodegradation of C.I. Reactive Red 195 by <Emphasis Type="Italic">Enterococcus faecalis</Emphasis> strain YZ66

Synthetic dyes are extensively used in textile dyeing, paper, printing, colour photography, pharmaceutics, cosmetics and other industries. Among these, azodyes represents the largest and most versatile class of synthetic dyes. As high as 50% of the dyes are released into the environment during manufacture and usage. Traditional methods of treatment are found to be expensive and have operational problems. Biological decolourization has been investigated as a method to transform, degrade or mineralize azo dyes. In the present studies bacteria from soil from dye waste area, dye waste, sewage and dung were subjected to acclimatization with C.I. Reactive Red 195 an azo dye, in the basal nutrient media. The most promising bacterial isolate was used for further dye degradation studies. The 16s rRNA gene sequencing and biochemical characteristics revealed the isolated organism as Enterococcus faecalis strain YZ66. The strain showed 99.5% decolourization of the selected dye (Reactive Red 195–50 mg/l) within one and half hour in static anoxic condition. The optimum pH and temperature for the decolourization was 5.0 and 40°C respectively. The biodegradation was monitored by UV–Vis, FTIR, TLC and HPLC. The final products were characterized by Gas chromatography and Mass Spectrophotometry. Toxicity study demonstrated no toxicity of the biodegradation product. The results suggest that the isolated organism E. faecalis strain YZ 66 can be used as a useful tool to treat waste water containing reactive dyes.