Extreme population subdivision or cryptic speciation in the cactus Pilosocereus jauruensis? A taxonomic challenge posed by a naturally fragmented system

In allopatric systems, where gene flow is highly constrained, the distinction between intraspecific differentiation and speciation is a challenging task. Pilosocereus jauruensis is a columnar cactus restricted to patchy dry habitats of Pantanal, Cerrado, and Chaco biomes in south-western Brazil and neighbouring countries. This species was recently reinstated after having been synonymized with P. machriisi, now including P. paraguayensis, P. saudadensis, and P. densivillosus as its synonyms. These taxa have been placed within the informal Aurisetus group. The present study aimed to investigate the genetic structure of P. jauruensis in order to identify possible distinct evolutionary lineages, and to support further refinement of the taxonomy of this species. For this purpose, 10 microsatellite loci were genotyped for 156 individuals of P. jauruensis. To provide a proxy for the expected interspecific differentiation level within this allopatric system, two populations (49 individuals) of P. vilaboensis (a species closely related to P. jauruensis) were also included. Additionally, two cpDNA markers (trnSGCU-trnGUCC and trnT-trnL) for a subsample of 44 individuals of both species were sequenced. The results obtained showed that even though P. jauruensis populations are relatively small and isolated, they still maintain a high level of genetic diversity (e.g., H_E = 0.557 to 0.725; H_O = 0.253 to 0.409). The study suggests the existence of two distinct taxa/evolutionary lineages through their entire distribution. Two populations found in the same geographic region of the now synonymized P. densivillosus showed significant genetic divergence when compared with other populations of P. jauruensis. In contrast, our results did not support an evolutionary independence hypothesis for populations that occur in the same geographic region of the synonymous P. saudadensis.     

Sequence-based species delineation and molecular phylogenetics of the transitional Nearctic–Neotropical grasshopper genus Taeniopoda (Orthoptera,Romaleidae)

Taeniopoda is a genus of grasshoppers currently represented by 12 species distributed from southern USA to Panama, with most of them occurring along the transitional Nearctic–Neotropical region in central and southern Mexico. Despite being a small group of conspicuous, colourful species, the systematics of Taeniopoda has been largely neglected, including its phylogenetic affinity with the morphologically similar, monotypic genus Romalea. Here, we assessed the species limits in 11 of the species of Teniopoda based on two mitochondrial (mt) markers (COI, cyt b). Phylogenetic relationships were reconstructed adding two nuclear gene markers (28S, H3). A relaxed molecular clock analysis was performed based on the mt markers. We detected nuclear mt paralogues (numts) and the probable introgression of T. tamaulipensis mtDNA in specimens of T. eques from central Mexico. Between six and 14 species of Taeniopoda were delimited by the sequence-based approaches performed (COI divergence with thresholds of 1 and 2%; General Mixed Yule-Coalescent (GMYC) model). The GMYC and 1% threshold analyses with COI were more congruent with the currently recognized morphology-based taxonomy with 10 and 11 putative species, respectively. Four of these species were regarded as ‘stable’, since they were supported by at least one of the molecular analyses and by diagnostic morphological features. The species-based phylogeny recovered Taeniopoda as paraphyletic with respect to the monotypic genus Romalea. Three morphologically and geographically congruent major clades were recovered, two with species having a considerably elevated pronotal crest and one with its members having it less elevated. The origin and subsequent diversification of Taeniopoda were estimated to occur from the mid and late Miocene to Pliocene, respectively. The current species diversity in Taeniopoda was estimated to occur during the Pleistocene, which was probably influenced by the climatic oscillations that occurred during this period and the uplift of mountain ranges in Central America.     

Camera traps reveal the predation of artificial nests by free-ranging Azara’s agoutis,Dasyprocta azarae Lichtenstein, 1823, in central Brazil

Agoutis, Dasyprocta spp., are medium-sized rodents distributed in Neotropical region. Their diet is usually described as granivorous/frugivorous, and agoutis are recognised as important seed dispersers. Here, we present two spatially and temporally independent records of egg predation by Azara’s agouti, Dasyprocta azarae, in fragments of Cerrado savanna forest. In both cases, the agoutis ingested quail eggs that had been placed in artificial nests at ground level, 100 m from the edge of the forest. As Dasyprocta is a herbivorous rodent, this predatory behaviour is unexpected and may represent an opportunistic foraging strategy. These observations provide important new insights into the feeding biology of agoutis and highlight the value of camera traps as a tool for the collection of data on the behavioural ecology and natural history of vertebrates in general.     

A new species of Discocyrtanus from Mato Grosso,Brazil (Opiliones: Gonyleptidae) with a key to the species of the genus

Discocyrtanus canjinjim sp. n., belonging to the family Gonyleptidae Sundevall, 1833 is described based on nineteen specimens, eleven adult males and eight adult females, collected in the Vila Bela da Santíssima Trindade, in the State of Mato Grosso, Brazil. This new species represents an endemic component for the harvestmen fauna of Chiquitano Dry Forests terrestrial eco-region, being the most occidental point of distribution of the genus, notably found in the Cerrado and the Atlantic Forest. The new species is characterized by femur IV swollen with the same length of dorsal scutum, trochanter IV with prodorsal distal apophysis as a stout hook not bifurcated, and a unique form of genitalia in the genus. This paper also includes the first identification key to the species of the genus after its revalidation.     

CpDNA-based species identification and phylogeography: application to African tropical tree species

Despite the importance of the African tropical rainforests as a hotspot of biodiversity, their history and the processes that have structured their biodiversity are understood poorly. With respect to past demographic processes, new insights can be gained through characterizing the distribution of genetic diversity. However, few studies of this type have been conducted in Central Africa, where the identification of species in the field can be difficult. We examine here the distribution of chloroplast DNA (cpDNA) diversity in Lower Guinea in two tree species that are difficult to distinguish, Erythrophleum ivorense and Erythrophleum suaveolens (Fabaceae). By using a blind-sampling approach and comparing molecular and morphological markers, we first identified retrospectively all sampled individuals and determined the limits of the distribution of each species. We then performed a phylogeographic study using the same genetic data set. The two species displayed essentially parapatric distributions that were correlated well with the rainfall gradient, which indicated different ecological requirements. In addition, a phylogeographic structure was found for E. suaveolens and, for both species, substantially higher levels of diversity and allelic endemism were observed in the south (Gabon) than in the north (Cameroon) of the Lower Guinea region. This finding indicated different histories of population demographics for the two species, which might reflect different responses to Quaternary climate changes. We suggest that a recent period of forest perturbation, which might have been caused by humans, favoured the spread of these two species and that their poor recruitment at present results from natural succession in their forest formations.     

山西文峪河上游河岸林群落稳定性评价

稳定性是植物群落结构与功能的综合特征。该文运用模糊综合评判理论评价了山西文峪河上游13种河岸林群落的稳定性。基于群落整体稳定性和结构稳定性的考虑, 选取乔木层优势树种更新潜力、物种多样性、Godron指数、立地质量和保护程度等5项特征指标, 通过计算各群落5项指标隶属度的平均值来评价群落稳定性。研究结果表明, 多数群落的稳定性隶属度介于0.40-0.60, 属于低山森林演替系列的青杨辽东栎(Populus cathayana + Quercus wutaishanica)混交林和油松白桦(Pinus tabulaeformis + Betula platyphylla)混交林的稳定性居中; 中高山森林演替系列中, 群落稳定性随着演替的进展而增加, 青杨(Populus cathayana)林结构简单, 稳定性最低, 青杄(Picea wilsonii)林接近演替顶极, 稳定性最高; 但并非只有近演替顶极的群落是稳定的, 客观存在的各种林冠干扰和河岸生境的高度异质性也使得白杄杨桦(Picea meyeri + Populus cathayana + Betula platyphylla)混交林、落叶松白杄(Larix principis-rupprechtii + Picea meyeri)混交林和落叶松青杄(Larix principis- rupprechtii + Picea wilsonii)混交林有较高的稳定性。     

物种概念及其界定

半世纪以来,物种概念的定义备受关注,不同研究方向的生物学家提出24种不同或至少有分歧的物种概念,根据其不同的物种概念,物种的界定和物种的数量会出现很大的差异。人们普遍认同:物种是进化分离的微居群谱系,但把谱系分离过程中获得的特征如生殖隔离、可鉴定性、单系统发生等视为鉴定物种次级特征却有不同的声音。该文提出统一的物种概念,把谱系进化分离作为物种界定的唯一而又必要的特征,把谱系分离过程中获得的次级特征作为界定谱系分离的证据。鉴于此,物种概念间的分歧就会化解。其一,物种概念化与物种界定明显分开,不再混淆;其二,谱系的次级特征只与物种界定有关,在某种程度上为谱系分离提供证据;第三,若能把合理解释的任何一个特征作为某物种客观存在的证据,这样更多的特征更能确定谱系分离;最后最重要的是,统一物种概念使我们解放思想,扬弃传统的物种界定标准,探求物种界定的新思路。     

江西武夷山河岸带阔叶林群落的物种组成和多样性分析

以江西武夷山国家级自然保护区河岸带阔叶林群落为研究对象,对其物种组成进行调查,并采用物种丰富度指数、多样性指数和均匀度指数分析物种多样性。结果表明,保护区河岸带物种极丰富,三条水系10个样方中共调查到维管束植物93科174属304种,群落建群种和灌木层优势种均以常绿阔叶树种为主,物种组成具有典型的亚热带植被特色,以壳斗科、樟科、山茶科物种最多。保护区不同海拔河岸带物种丰富度指数、多样性指数的变化规律基本一致。     

江西新岗山森林昆虫种内遗传距离研究

DNA条形码目前广泛用于昆虫多样性研究。本研究采用DNA条形码（即线粒体细胞色素c氧化酶亚基I基因COI 5′端）,通过比较所获分子分类操作单元（Molecular operational taxonomic units,MOTU）的种内遗传距离,探究DNA条形码在亚热带森林（位于我国江西省新岗山）不同昆虫类群中的物种鉴定和界定效用。数据分析中结合数据库比对信息,采用jMOTU、ABGD、bPTP、GMYC 这4种物种界定方法获得MOTU,从而开展种内遗传距离分析。本研究共挑选出479个昆虫样本,获得475条COI序列,经NCBI、BOLD在线数据库比对属于6个目,与形态初步划分一致;物种界定分析获得288个MOTU,其中鳞翅目最多,达85个,膜翅目、双翅目、半翅目、鞘翅目次之,分别为80、74、21和20个,直翅目最少,仅8个。膜翅目和双翅目的种内遗传距离均值及标准偏差较大（膜翅目：0.89%±0.87%;双翅目：0.73%±0.58%）,鳞翅目的最小（0.28%±0.20%）。研究表明：不同昆虫类群的种内遗传距离虽然整体在一定范围,但仍然存在一定的差异,因此不能笼统地依靠遗传距离的距离阈值进行物种划分;现有数据库需要补充足够的昆虫物种信息,才能提升物种鉴定效率。本研究丰富了亚热带森林昆虫分子数据库,同时也为进一步探索基于分子分类学开展昆虫多样性研究提供了基础数据和参考。     

大别山南坡森林植物群落物种多样性及其与海拔因子的关系

大别山地区植物资源丰富,区系组成复杂且起源古老,为连接华东、华北和华中三大植物区系的纽带,也是我国重要的生物多样性保护和水源涵养生态功能区。采用样方法,在大别山南坡的多枝尖、庵基坪和麒麟沟3个地区,沿着不同海拔高度选取了具有代表性的森林植物群落进行研究,从不同植物群落类型和层次的物种多样性、均匀度和丰富度及其与海拔因子的关系等方面,对大别山南坡的森林植物群落物种多样性进行综合分析。结果表明:1. 共记录有植物108科270属449种,划分为20个森林植物群落类型;2. 森林植物群落各层次物种丰富度表现为草本>乔木>灌木;Shannon-Wiener多样性指数和Simpson多样性指数呈现出乔木>灌木>草本;Pielou均匀度指数变化较为复杂;3. 森林植物群落各层次的物种丰富度随海拔升高而下降;Shannon-Wiener指数和Simpson指数也表现为随着海拔升高而下降,但草本层在1400m之后有上升的趋势。Pielou指数在乔木层中表现为随着海拔的升高而下降,在草本层中表现为先下降后出现上升,在灌木层中则随着海拔的升高而上升,但其波动更为剧烈。本研究对大别山南坡森林植被大范围的采样观测研究,能够全面的展现大别山南坡森林植物的种类分布、空间组成等整体概况及其与海拔因子的关系,能为以后大别山南坡生物多样性的保护提供较为全面真实的数据,从而为大别山地区生物多样性的保护和可持续利用提供理论依据和实践意义。