Microhabitat of critically endangered Lupinus aridorum (Fabaceae) at wild and introduced locations in Florida scrub

Elucidating microhabitat preferences of a rare species are critical for its conservation. Lupinus aridorum McFarlin ex Beckner (Fabaceae) is a critically endangered plant known only from a few locations in imperiled Florida scrub habitat and nothing is known about its preferred microhabitat. Our goals were threefold. First, determine whether L. aridorum has multiple cytotypes because this can influence its spatial distribution. Second, measure how microhabitat characteristics at locations supporting wild L. aridorum vary from random locations, which will provide information about microhabitat characteristics that influence the spatial distribution of individuals. Third, measure whether microhabitat characteristics differ between locations supporting wild or introduced plants, which will provide information about the realized and fundamental niche. Our research determined that L. aridorum is diploid and grew, on average, in areas closer to trees and shrubs, with lower soil moisture, and with a greater mixture of detritus than random locations. Some microhabitat characteristics at locations where L. aridorum were introduced were similar to microhabitat supporting wild L. aridorum, but multiple soil characteristics differed as did the plant community, which contained more nonnative plant species near introduced plants. Therefore, the realized niche is narrower than the fundamental niche. Overall, information about the microhabitat of L. aridorum can be used to design appropriate management programs to conserve and restore populations of this plant species and species that occupy a similar niche in imperiled Florida scrub.     

Evaluation of the Umbrella Species Concept at Fine Spatial Scales

Declines in the spatial extent of the sagebrush ecosystem have prompted the consideration of conservation efforts that view the greater sage-grouse (Centrocercus urophasianus; sage-grouse) as an umbrella species at landscape scales. Conservation strategies that focus on an umbrella species, however, may have unintended negative consequences for co-occurring species at finer scales. In North America, grassland and shrubland songbird populations are declining faster than other avian groups. Conservation of sage-grouse habitats may protect songbird habitats where distributions overlap. To assess the umbrella species concept at fine scales, we quantified nest-site selection for a sagebrush-obligate songbird, the Brewer's sparrow (Spizella breweri). We then compared the fine-scale habitat variables that influenced Brewer's sparrow nest-site selection with fine-scale nest-site selection for sage-grouse in the Powder River Basin region of northeastern Wyoming, USA. We modeled nest-site selection using conditional logistic regression for Brewer's sparrow (2016–2017) and logistic regression for sage-grouse (2004–2007). Both species selected nest sites with higher visual obstruction, shrub height, and branching density, although the selection for higher shrub height was stronger for sage-grouse. Brewer's sparrows selected nest shrubs with higher percentage of living foliage (vigor), and the opposite was shown for sage-grouse. At the nest site, based on the variables we measured, our results suggest that Brewer's sparrows and sage-grouse select for similar habitat attributes, with the exception of shrub vigor of the nest shrub. The stronger selection for more vigorous shrubs in Brewer's sparrows may be because they nest in shrubs, rather than on the ground under shrubs (as in sage-grouse). Most of the conservation objectives for protection of sage-grouse habitats appear to be beneficial or inconsequential for Brewer's sparrow. Local habitat management for sage-grouse as a proxy for conservation of other species may be justified if the microhabitat preferences of the species under the umbrella are understood to avoid unintentional negative effects. © 2019 The Wildlife Society.     

Microhabitat Selection of three Forest Understory Birds in the Brazilian Atlantic Rainforest

When assessing fragmentation effects on species, not only habitat preferences on the landscape scale, but also microhabitat selection is an important factor to consider, as microhabitat is also affected by habitat disturbance, but nevertheless essential for species for foraging, nesting and sheltering. In the Atlantic Rainforest of Brazil we examined microhabitat selection of six Pyriglena leucoptera (white-shouldered fire-eye), 10 Sclerurus scansor (rufous-breasted leaftosser), and 30 Chiroxiphia caudata (blue manakin). We radio-tracked the individuals between May 2004 and February 2005 to gain home ranges based on individual fixed kernels. Vegetation structures in core plots and fringe plots were compared. In C. caudata, we additionally assessed the influence of behavioural traits on microhabitat selection. Further, we compared microhabitat structures in the fragmented forest with those in the contiguous, and contrasted the results with the birds' preferences. Pyriglena leucoptera preferred liana tangles that were more common in the fragmented forest, whereas S. scansor preferred woody debris, open forest floor (up to 0.5 m), and a thin closed leaf litter cover which all occurred significantly more often in the contiguous forest. Significant differences were detected in C. caudata for vegetation densities in the different strata; the distance of core plots to the nearest lek site was significantly influenced by sex and age. However, core sites of C. caudata in fragmented and contiguous forests showed no significant differences in structure. Exploring microhabitat selection and behavior may greatly support the understanding of habitat selection of species and their susceptibility to fragmentation on the landscape scale.     

Cliff characteristics,neighbour requirements and breeding success of the colonial Cape Vulture Gyps coprotheres

The breeding success of endangered colonial nesting species is important for their conservation. Many species of Gyps vultures form large breeding colonies that are the foci of conservation efforts. The Cape Vulture is a globally threatened species that is endemic to southern Africa and has seen a major reduction in its population size (≥ 50% over 48 years). There is evidence that breeding colonies are prone to desertion as a result of human disturbance. Factors that influence the occupancy and breeding success of individual nest‐sites is not fully understood for any African vulture species. We investigated cliff characteristics and neighbour requirements of the Msikaba Cape Vulture colony, a major breeding colony in the southern node of the population in the Eastern Cape, South Africa, together with their nest‐site occupation and breeding success over 13 years. In total, 1767 breeding attempts were recorded. Nest‐sites that had a higher elevation, smaller ledge depth, greater total productivity and were surrounded by conspecifics were more likely to be occupied, although the amount of overhang above the nest was not an important predictor of occupancy. In accordance with occupation, nest‐sites with a smaller ledge depth had higher breeding success; however, nests with a greater overhang were also more successful and height of the nest‐site was not an important predictor of breeding success. The breeding success of a nest‐site in a given year was positively influenced by the number of direct nest neighbours, and nests in the middle of high‐density areas had greater breeding success. This suggests that maintaining a high nest density may be an important consideration if declines of reproducing adults continue. Breeding success declined over the study period, highlighting the effects of a temporal variation or observer bias. Our results identified optimal nest‐site locations (ledge depths of 1 m, at a height of 180 m) and their effects on breeding success. This information can be used for planning reintroduction efforts of the endangered Cape Vulture and for their ongoing conservation.     

Spatial organization of a desert rodent community: food addition and species removal

Summary From 1977 through 1983 we conducted experiments on a desert rodent community where supplemental seeds were added or certain rodent species and ants were removed from 0.25-ha fenced plots in a Chihuahuan Desert site in southeastern Arizona, USA. In this paper we examine the patterns of microhabitat use relative to vegetative cover by 11 rodent species. The results show that: i) removal of the largest seed-eating species, Dipodomys spectabilis, produced the most pervasive and dramatic shifts in microhabitat use by the remaining rodent species; ii) adding seeds or removing ants had little effect on the spatial use of microhabitats by rodents in this community; and iii) non-granivores were just as likely as granivores to shift microhabitat use when other granivores were removed. We believe these results indicate that both food and foraging microsites are limited but the relegation of subdominant species to lesspreferred microhabitats by the large Dipodomys spectabilis is the major factor underlying the spatial organization of this community. Results also demonstrate that strong interactions among species increase the probability that pathways of indirect interactions through intermediary species are important; these complex linkages may include species that overlap little in food preferences.     

Behavioural interactions between the introduced plague minnow Gambusia holbrooki and the vulnerable native Australian ornate rainbowfish Rhadinocentrus ornatus,under experimental conditions

The impact of the plague minnow Gambusia holbrooki on the ornate rainbowfish Rhadinocentrus ornatus was investigated by comparing the behavioural response and microhabitat preferences of populations of R. ornatus collected from locations that are sympatric and allopatric with G. holbrooki. Rhadinocentrus ornatus populations from sympatric areas exhibited a significantly higher frequency of intraspecific chases, spent significantly more time at an intermediate depth and were nipped significantly less often by G. holbrooki compared to the allopatric R. ornatus populations. The frequency of intraspecific chases by all R. ornatus populations were greatest immediately following G. holbrooki exposure and increased further with repeated exposure. Activity levels were also significantly higher in the presence of G. holbrooki. Gambusia holbrooki and the allopatric R. ornatus populations showed very similar microhabitat preferences, whereas the preferences for the sympatric R. ornatus populations have shifted to facilitate cohabitation with G. holbrooki. The results suggest that sympatric populations of R. ornatus have evolved or developed behavioural responses to G. holbrooki through niche and character shifts. The implications are discussed in relation to the conservation management of R. ornatus and other threatened species.     

A multi-scale approach for identifying conservation needs of two threatened sympatric steppe birds

Habitat selection is an inherently scale-sensitive process in which detected selection patterns frequently depend on the scale of analysis employed. We used a multi-scale modelling approach to identify how the distributions of two sympatric birds are shaped by differential selection at the landscape, land use and microhabitat scales and by human infrastructures as possible sources of disturbance. We studied two threatened steppe birds, the pin-tailed sandgrouse (PTS) and black-bellied sandgrouse (BBS) in central Spain. Land use gradients explained most of the variation in PTS and BBS occurrence, but there was cross-scale interdependence between the lower (microhabitat) and upper (landscape) spatial scales for the PTS. Synergies between the three scales highlighted the importance of integrating habitat scales in a single modelling framework. The process of habitat selection was also modulated by human disturbance. Both species selected ploughs of large size distant from houses, tracks and other infrastructures, although BBS exhibited broader habitat tolerance than the PTS, and was more sensitive to human disturbance. At microhabitat scale, PTS selected ploughs with greater green vegetation cover and insect abundance and fallows with lower dry vegetation cover and height but greater stone cover. This might reflect a trade-off between camouflage (vegetation and stone cover for concealment) and visibility for predator detection and escape. Ploughs and fallows should be maintained by means of traditional 2-year rotations and low management during the breeding season. Ongoing urbanization trends and infrastructure development inside protected areas should be limited. Multi-scale models were key to identify scale-specific factors that determine sandgrouse habitat preferences and conservation requirements at appropriate levels, and are recommended to better guide regional and local conservation efforts of threatened species.     

Contrasting habitat use of morphologically similar bat species with differing conservation status in south‐eastern Australia

The east‐coast free‐tailed bat Mormopterus norfolkensis Gray, 1839 is a threatened insectivorous bat that is poorly known and as such conservation management strategies are only broadly prescribed. Insectivorous bats that use human‐modified landscapes are often adapted to foraging in open microhabitats. However, few studies have explored whether open‐adapted bats select landscapes with more of these microhabitat features. We compared three morphologically similar and sympatric, molossid bats (genus Mormopterus) with different conservation status in terms of their association with vegetation, climate, landform and land‐use attributes at landscape and local habitat element scales. We predicted that these species would use similar landscape types, with semi‐cleared and low density urban landscapes used more than forested and heavily cleared landscapes. Additionally, we explored which environmental variables best explained the occurrence of each species by constructing post‐hoc models and habitat suitability maps. Contrary to predictions, we found that the three species varied in their habitat use with no one landscape type used more extensively than other types. Overall, M. norfolkensis was more likely to occur in low‐lying, non‐urban, riparian habitats with little vegetation cover. Mormopterus species 2 occupied similar habitats, but was more tolerant of urban landscapes. In contrast, Mormopterus species 4 occurred more often in cleared than forested landscapes, particularly dry landscapes with little vegetation cover. The extensive use of coastal floodplains by the threatened M. norfolkensis is significant because these habitats are under increasing pressure from human land‐uses and the predicted increase in urbanization is likely to further reduce the amount of suitable habitat.     

An ‘ecological trap’ for yellow warbler nest microhabitat selection

Contrary to assumptions of habitat selection theory, field studies frequently detect ‘ecological traps’, where animals prefer habitats conferring lower fitness than available alternatives. Evidence for traps includes cases where birds prefer breeding habitats associated with relatively high nest predation rates despite the importance of nest survival to avian fitness. Because birds select breeding habitat at multiple spatial scales, the processes underlying traps for birds are likely scale‐dependent. We studied a potential ecological trap for a population of yellow warblers Dendroica petechia while paying specific attention to spatial scale. We quantified nest microhabitat preference by comparing nest‐ versus random‐site microhabitat structure and related preferred microhabitat features with nest survival. Over a nine‐year study period and three study sites, we found a consistently negative relationship between preferred microhabitat patches and nest survival rates. Data from experimental nests described a similar relationship, corroborating the apparent positive relationship between preferred microhabitat and nest predation. As do other songbirds, yellow warblers select breeding habitat in at least two steps at two spatial scales; (1) they select territories at a coarser spatial scale and (2) nest microhabitats at a finer scale from within individual territories. By comparing nest versus random sites within territories, we showed that maladaptive nest microhabitat preferences arose during within‐territory nest site selection (step 2). Furthermore, nest predation rates varied at a fine enough scale to provide individual yellow warblers with lower‐predation alternatives to preferred microhabitats. Given these results, tradeoffs between nest survival and other fitness components are unlikely since fitness components other than nest survival are probably more relevant to territory‐scale habitat selection. Instead, exchanges of individuals among populations facing different predation regimes, the recent proliferation of the parasitic brown‐headed cowbird Molothrus ater, and/or anthropogenic changes to riparian vegetation structure are more likely explanations.     

Habitat preference and dispersal of the Duke of Burgundy butterfly (Hamearis lucina) on an abandoned chalk quarry in Bedfordshire, UK

The Duke of Burgundy butterfly (Hamearis lucina) has declined severely since the 1970s and is a UK Biodiversity Action Plan Priority species. Its populations are mostly confined to scrubby calcareous grassland, where management for short-turf species can be detrimental to the butterfly. We briefly review the literature on the Duke of Burgundy and investigate their habitat preferences, survival and dispersal at a chalk grassland reserve in Bedfordshire, UK. We found that adults generally preferred more sheltered locations but that their habitat preferences were less restrictive than choice of food-plants. Females chose larger plants with longer leaves in denser patches on which to lay eggs. Adults showed reasonable dispersal ability with turnover recorded between areas isolated by scrub. Our results indicate that the species is able to use isolated areas of favourable habitat at a reserve scale and that conservation could therefore involve cyclic management to provide suitable habitat year-to-year.     

Stand- and plot-level changes in a boreal forest understory community following wildfire

Background: Boreal forest understory plant communities are known to be resilient to fire – the species composition of stands after a fire is quite similar to the pre-fire composition. However, we know little about recovery of individual plants within particular locations in forest stands (i.e. plot-level changes) since we usually do not have pre-fire data for plots.

Aims: We wanted to determine whether species recruited into the same or different locations in a Pinus banksiana stand that experienced a severe wildfire.

Methods: We used pre-existing permanent plots to evaluate the cover of understory after an unplanned wildfire.

Results: Across the entire stand nine of 47 species showed a significant change in cover. The largest change in a plant functional group was in the mosses, with all species present before fire being eliminated. There was no change in species diversity or total cover. At the plot level, species composition showed a much greater change. An average of 47% of the species present in a plot before the fire were absent in the same plot after the fire, and the total species turnover in plots was 88% of the species present before the fire. The plots showed a similar shift in species composition.

Conclusions: These results confirm that boreal forest communities show a high degree of resilience to fire, but within a forest stand species will be found in different locations following fire, potentially exposing them to a different set of biotic and abiotic conditions in these new locations.     

Frog call transmission in forestry monocultures: Are there drawbacks?

Anuran males emit advertisement calls for the purpose of attracting females and repelling conspecific males. Call transmission is influenced by the acoustics of the propagation environment, including vegetation. Thus, forestry monocultures of non-native trees represent artificial environments that could modify call transmission. These monocultures have substituted large areas of Atlantic Forest in southern Brazil, representing a conservation challenge. Considering this context, we hypothesized that anurans have calls that are less attenuated in their native environment than in forest plantations. To test it, we performed sound transmission experiments using calls of three anuran species native to southern Brazil: Boana bischoffi, B. leptolineata, and Hylodes meridionalis. We compared sound attenuation between the native forest and forestry monocultures (Eucalyptus sp. and Pinus sp. forests), and included distance from the sound source, air temperature, humidity, and vegetation density as cofactors in linear mixed models. Our results show that the advertisement calls of the two tree frogs (Boana) attenuate less in tree plantations than in native forests, while the third species shows either no differences or less attenuation in native forests. Our results can be understood according to differences in natural history and microhabitat use among the studied species. The two tree frog species vocalize perched from vegetation so their calls become better transmitted in forestry monocultures, which have fewer trees than the native forest. On the other hand, H. meridionalis calls from rocks on streams and the propagation is finely tuned to this peculiar microhabitat. We discuss the conservation implications of our findings for anurans and for the Atlantic Forest. Abstract in Portuguese and Spanish are available with online material.     

Microhabitat use by wild-ranging Cabrera voles <Emphasis Type="Italic">Microtus cabrerae</Emphasis> as revealed by live trapping

The conservation problems affecting the endangered rodent Microtus cabrerae are mainly related to habitat loss and fragmentation. In the present study, we examined the presence/absence of the species in a group of potentially suitable habitat patches, and then evaluated the microhabitat attributes of locations used by wild-ranging individuals within occupied patches. Our results revealed that shallow flooding and abundant grass cover appear to be important factors in determining the presence among localities, but high rush cover strongly determined the presence and habitat use by voles both among and within localities. The preservation of these microhabitat characteristics may be required to effectively ensure the occurrence and stability of M. cabrerae colonies.     

Niche partitioning among three montane ground‐dwelling pheasant species along multiple ecological dimensions

Pheasants (order Galliformes) are typical ground‐dwelling birds, having a large body size and weak flight abilities. Sympatric pheasants are expected to share narrower niche space and face more extensive interspecific competition. However, little work has been undertaken simultaneously to investigate niche partitioning among sympatric pheasant species across multiple ecological dimensions. We compared microhabitat use, activity pattern and foraging strategy of sympatric Blood Pheasant Ithaginis cruentus, Buff‐throated Partridge Tetraophasis szechenyii and White Eared‐pheasant Crossoptilon crossoptilon on the Qinghai‐Tibet Plateau, China, to identify potential interspecific niche partitioning along different ecological dimensions in the breeding season. We found that the Buff‐throated Partridge differed significantly from the other two species in microhabitat use, and the three species showed different foraging strategies. It is likely that niche partitioning reduced potential interspecific competition, thus facilitating the species’ stable coexistence. Our study provides practical evidence of multidimensional niche theory within sympatric ground‐dwelling pheasant species, emphasizing that species interactions and coexistence within a guild are often not uni‐dimensional. Given global conservation concern for maintaining bird diversity, we recommend further restriction of yak grazing in these species’ habitat.     

Aspects of habitat selection in the mosquitofish gambusia affinis

Laboratory experiments were performed to determine behavioral preferences of Gambusia affinis for habitat variables in partitioned aquaria. The fish preferred calm water, dark-colored substrates and subsurface vegetation providing lateral concealment. Floating cover, which obstructed access to the surface, was avoided. Lack of preference for real over plastic plant cover indicates that visual rather than chemical cues are involved. These laboratory preferences correspond to the reported microhabitat distribution of G. affinis in nature and indicate the presence of an active habitat preference, as opposed to passive habitat correlation, in this species. Species-specific habitat preferences, which may be narrower where a species occurs sympatrically with its congeners, probably form part of a reproductive isolating mechanism.     

Restricted movements and mangrove dependency of the nervous shark Carcharhinus cautus in nearshore coastal waters

This study used a network of acoustic receivers deployed around a no‐take zone in Mangrove Bay, within the Ningaloo Reef Marine Park in Western Australia, to study residency and habitat preference of a small coastal shark, the nervous shark Carcharhinus cautus. Twelve C. cautus were tagged with acoustic tags and monitored for up to 579 days. Based on individuals detected within the receiver array for at least 2 months, C. cautus had small core (50% kernel utilization distribution, KUD) and home ranges (95% KUD) of 0·66 and 3·64 km², respectively, and showed a strong habitat preference for mangroves, which are only found in the no‐take zone. This resulted in C. cautus spending most of their detected time within the no‐take zone boundaries (mean = 81·5%), showing that such a protected area could be beneficial to protect this species from extensive fishing pressure and local depletion, where required. Not all C. cautus remained within the acoustic array, however, suggesting that individual variations occur and that not all individuals would benefit from such protection. This study provides important information about the habitat, residency and movements of C. cautus that can be used for management and conservation. The strong affinity and residency of C. cautus within a mangrove‐fringing coastline, emphasizes the importance of mangrove habitat to the species and suggests that such preferences can be used to design appropriate no‐take zones for this species or others with similar habitat preferences.     

Relationships between life-history strategies of European freshwater fish species and their habitat preferences

1. Focusing on the current environmental characteristics, the ‘habitat template’ theory proposes that life‐history strategies summarise how evolution has shaped species to cope with the temporal and spatial variability of their present environment. The hierarchical ‘landscape filters’ concept predicts that the distribution of species reflects their specific traits that allow them to pass through multiple habitat filters. Together, these theories showed the importance of identifying the functional relationships of species to selective habitat forces in order to predict the organisation and response of communities to the environment. 2. We test the relationships between life‐history traits of European freshwater fish species’ and their habitat preferences, to detect the strategies adopted by fish to cope with their current habitat. For this purpose, we use published data on species traits and habitat preferences (microhabitat hydraulics, temperature and oxygen level). We use multivariate analyses to classify fish species’ strategies and test the relationships between strategies and habitat preferences. 3. We identified a continuum of life‐history patterns between two extremes, with opportunistic and periodic species. Our study supports the idea that microhabitat hydraulics plays a more important role as a template for these species ecological strategies than temperature and oxygen level. Indeed, riffle habitats may select opportunistic species whereas weak relationships are found between species strategies and both their temperature and oxygen level preferences. In addition, the ratio between mortality and growth rate (dimensionless trait), reflecting a trade‐off between growth and survival, varied among species according to the use of their hydraulic habitat, with species using deep habitats exhibiting the highest values. 4. These general relationships between hydraulics and traits may be of importance in community ecology to develop predictive models to understand how fish communities change with the hydraulic environment.     

Microhabitat utilization by two leptodactylid frogs in the Andes of central Chile

Summary Some basic parameters of the life history of Alsodes montanus and Alsodes tumultuosus (Anura-Leptodactylidae), were studied from 1977 to 1980 by periodic field observations at Farellones and La Parva (33–34° south lat.; 2,700–3,000 m above sea level). Special attention was paid to strategies of resource partitioning in relation to gross features of the environment. The latter was unstable with a relative short period favorable for activity of the animals. Physical environmental differences between the first and second season of this study, resulted in a decrease in total number of active adults, a reduction in the duration of larval activity and a shift in microhabitat preferences of larvae.During the favorable season, October to May, adults of both species showed spatial and temporal segregation, related to different physical features of the environment; larvae did not show temporal segregation. Larvae of both species were found in seven different microhabitats; only in one of these did they show significant difference in microhabitat preference, A. tumultuosus was found more often in crevices. Microhabitat dimensions were more important than time and food resources in the separation of the niches of the two species. The segregation of niche dimensions, microhabitat, diel and annual activity and food were not complementary.Coexistence was therefore observed with the species tending to use different resources. When the same resource was used, it was not limiting.     

Epiphytic foraminifera

Epiphytic foraminifera from microhabitats of structurally different algae and seagrasses have been examined with respect to function, adaptive strategies and processes of diversification using morphotype and multivariate data analyses (Q- and R-mode). Faunal data, morphotype and cluster analyses indicate the existence of four fundamentally different phytal microhabitats that are dominated by species with distinct test morphologies (morphotypes). Structural features of plant substrates are shown to strongly influence the composition and diversity of epiphytic assemblages. Microhabitat and substrate preferences of sessile epiphytes are reflected in shell shape and attachment surfaces. Motile epiphytic morphotypes predominantly exhibit species specific plant microhabitat preferences. Species-specific microhabitat preferences have been elaborated upon using different methodologies, thereby excluding generalized assumptions made when working solely with morphotypes. Adaptive features preserved in the microtopography of attachment surfaces in permanently attached species record valuable information to indicate the presence of seagrasses through geologic time.The specific diversity of epiphytic assemblages is controlled by independent factors related to time (temporal availability of phytal substrates) and space (substrate geometry). Low diversities are observed on algae with short life-spans, while on longer lived algae and seagrasses higher diversities are measured. Highest diversities are recorded for sediment-accumulating plant microhabitats that offer niches for a mixture of epiphytic, epibenthic and infaunal species. As reflected by the distribution of foraminiferalK- and r-strategists, life-span of epiphytes and temporal availability of plant substrates are in accordance.