Effects of dams and their environmental impacts on the genetic diversity and connectivity of freshwater mussel populations in Poyang Lake Basin,China

1. Habitat fragmentation is one of the main threats to biodiversity. Barriers to dispersal caused by anthropogenic habitat alteration may affect phylogeographic patterns in freshwater mussels. Knowledge of the phylogenetic and phylogeographic patterns of unionoids is vital to inform protection of their biodiversity.
2. Here, we assessed influences of dams and their environmental effects on the genetic diversity and population connectivity of a broadly distributed freshwater mussel, Nodularia douglasiae, in Poyang Lake Basin.
3. The results showed high genetic diversity in areas without dams and low genetic diversity in areas with dams. High genetic differentiation and low gene flow were found among the 11 populations. Genetic variation was significantly correlated with dissolved oxygen levels.
4. The observation of low genetic diversity in populations separated by dams indicated that those populations were subjected to genetic erosion and demographic decline because they are disconnected from other populations with higher diversity. High genetic differentiation and low gene flow among the 11 populations could be correlated with anthropogenic habitat alteration.
5. These results indicated that anthropogenic habitat alterations have led to the decline in freshwater mussel diversity. Therefore, we recommend maintaining favourable habitat conditions and connectivity of rivers or lakes, and strengthening study of life histories with host-test experiments to identify potential host fish species to strengthen the knowledge base underpinning freshwater mussel conservation.

     

Landscape variables influence taxonomic and trait composition of insect assemblages in Neotropical savanna streams

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Salinisation reduces biodiversity in neighbouring freshwater patches in experimental metacommunities

1. Aquatic ecosystems are biodiversity hot spots across many landscapes; therefore, the degradation of these habitats can lead to decreases in biodiversity across multiple scales. Salinisation is a global issue that threatens freshwater ecosystems by reducing water quality and local biodiversity. The effects of salinity on local processes have been studied extensively; however, the effects of salinisation or similar environmental stressors within a metacommunity (a dispersal network of several distinct communities) have not been explored.
2. We tested how the spatial heterogeneity and the environmental contrast between freshwater and saline habitat patches influenced cladoceran biodiversity and species composition at local and regional scales in a metacommunity mesocosm experiment. We defined spatial heterogeneity as the proportion of freshwater to saltwater patches within the metacommunity, ranging from a freshwater-dominated metacommunity to a saltwater-dominated metacommunity. Environmental contrast was defined as the environmental distance between habitat patches along the salinity gradient in which low-contrast metacommunities consisted of freshwater and low-salinity patches and high-contrast metacommunities consisted of freshwater and high-salinity patches.
3. We hypothesised that the α-richness of freshwater patches and metacommunity γ-richness would decrease as freshwater patches became less abundant along the spatial heterogeneity gradient in both low- and high-contrast metacommunities, because there would be fewer freshwater patches that could serve as source populations for declining populations. We hypothesised that low-contrast metacommunities would support more species across the spatial heterogeneity gradient than high-contrast metacommunities, because, via dispersal, low-salinity patches can support halotolerant freshwater species that can mitigate population declines in neighbouring freshwater patches, whereas` high-salinity patches will mostly support halophilic species, providing fewer potential colonisers to freshwater patches.
4. We found that α-richness of freshwater mesocosms and metacommunity γ-richness declined in saline-dominated metacommunities regardless of the environmental contrast between the freshwater and saline mesocosms. We found that environmental contrast influenced freshwater and saline community composition in low-contrast metacommunities by increasing the abundances of species that could tolerate low-salinity environments through dispersal, whereas freshwater and high-salinity communities showed limited interactions through dispersal.
5. Freshwater mesocosms had a disproportionate effect on the local and regional biodiversity in these experimental metacommunities, indicating that habitat identity may be more important than habitat diversity for maintaining biodiversity in some metacommunities. This study further emphasises the importance in maintaining multiple species-rich habitat patches across landscapes, particularly those experiencing landscape-wide habitat degradation.

     

Fine‐scale habitat preferences influence within‐river population connectivity: a case‐study using two sympatric New Zealand Galaxias fish species

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TDFCAM: A method for estimating stable isotope trophic discrimination in wild populations

1. Stable isotope mixing models (SIMMs) are widely used for characterizing wild animal diets. Such models rely upon using accurate trophic discrimination factors (TDFs) to account for the digestion, incorporation, and assimilation of food. Existing methods to calculate TDFs rely on controlled feeding trials that are time-consuming, often impractical for the study taxon, and may not reflect natural variability of TDFs present in wild populations.
2. We present TDF_CAM as an alternative approach to estimating TDFs in wild populations, by using high-precision diet estimates from a secondary methodological source—in this case nest cameras—in lieu of controlled feeding trials, and provide a framework for how and when it should be applied.
3. In this study, we evaluate the TDF_CAM approach in three datasets gathered on wild raptor nestlings (gyrfalcons Falco rusticolus; peregrine falcons Falco perigrinus; common buzzards Buteo buteo) comprising contemporaneous δ¹³C & δ¹⁵N stable isotope data and high-quality nest camera dietary data. We formulate Bayesian SIMMs (BSIMMs) incorporating TDFs from TDF_CAM and analyze their agreement with nest camera data, comparing model performance with those based on other relevant TDFs. Additionally, we perform sensitivity analyses to characterize TDF_CAM variability, and identify ecological and physiological factors contributing to that variability in wild populations.
4. Across species and tissue types, BSIMMs incorporating a TDF_CAM outperformed any other TDF tested, producing reliable population-level estimates of diet composition. We demonstrate that applying this approach even with a relatively low sample size (n < 10 individuals) produced more accurate estimates of trophic discrimination than a controlled feeding study conducted on the same species. Between-individual variability in TDF_CAM estimates for ∆¹³C & ∆¹⁵ N increased with analytical imprecision in the source dietary data (nest cameras) but was also explained by natural variables in the study population (e.g., nestling nutritional/growth status and dietary composition).
5. TDF_CAM is an effective method of estimating trophic discrimination in wild animal populations. Here, we use nest cameras as source dietary data, but this approach is applicable to any high-accuracy method of measuring diet, so long as diet can be monitored over an interval contemporaneous with a tissue's isotopic turnover rate.

     

Environmental and spatial controls of taxonomic versus trait composition of stream biota

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Homogenisation of water and sediment bacterial communities in a shallow lake (lake Balihe,China)

1. Planktonic and benthic bacterial communities hold central roles in the functioning of freshwater ecosystems and mediate key ecosystem services such as primary production and nutrient remineralisation. Although it is clear that such communities vary in composition both within and between lakes, the environmental factors and processes shaping the diversity and composition of freshwater bacteria are still not fully understood.
2. In order to assess seasonal and spatial variability in lake bacterial communities and identify environmental factors underpinning biogeographical patterns, we performed a large-scale sampling campaign with paired water and sediment sample collection at 18 locations during four seasons in Lake Balihe, a subtropical shallow fish-farming lake in mid-eastern China.
3. Pelagic and benthic bacterial communities were distinctly different in terms of diversity, taxonomic composition and community structure, with Actinobacteria, Bacteroidetes, Cyanobacteria and Alphaproteobacteria dominating lake water, and Acidobacteria, Bacteroidetes, Chloroflexi, Gammaproteobacteria and Deltaproteobacteria dominating sediment. Nevertheless, these two communities had stronger spatial concordance and overlap in taxa during spring and autumn seasons. Together, the main drivers of both the spatial and temporal variations in Lake Balihe bacterial communities were identified as water temperature, turbidity, nitrogen and phosphorus availability, and thermal stratification controlled by wind-mixing and activity of the dense farmed fish populations. Notably, populations affiliated with Firmicutes, known to be abundant in fish gut microbiome, were especially abundant in the summer season and locations where high fish biomass was found, suggesting a potential link between fish gut microbiome and the pelagic bacterial communities.
4. Our findings demonstrated seasonal homogenisation of pelagic and benthic bacterial communities linked to marked shifts in a set of seasonally-driven environmental variables including water temperature and nutrient availability.

     

Beavers (Castor canadensis) influence habitat for juvenile salmon in a large Alaskan river floodplain

Our aim was to determine how beavers affect habitats and food resources for juvenile salmon in the Kwethluk River in western Alaska.

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Bioclimatic influence on water chemistry and dissolved organic matter in shallow temperate lakes of Andean Patagonia: A gradient approach

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Identifying groundwater‐fed climate refugia in remote arid regions with citizen science and isotope hydrology

1. Groundwater and surface water‐fed systems act as biodiversity hotspots and ecological refuges and evolutionary refugia in arid regions. Groundwater‐dominated systems are sustained by underground aquifers that are recharged by rain that has fallen in the distant past, while surface water‐dominated systems are fed by recent local rain or floods. Some waterbodies are fed by a mixture of these sources. Perennial, groundwater‐dominated systems will act as refuges and refugia under future rainfall declines associated with global warming. We sought to identify climate refugia, based on groundwater dominance, by using isotope hydrology to characterise water samples collected by citizen scientists across arid central Australia.
2. There is a linear relationship between hydrogen isotopes (²H/¹H, δ²H) and oxygen isotopes (¹⁸O/¹⁶O, δ¹⁸O) in rainfall. This relationship is known as the meteoric water line (MWL). By comparing our samples with the Australian MWL, and developing a local evaporation line, we were able to test the hypotheses that groundwater‐dominated systems will follow the Australian MWL while temporary systems follow the local evaporation line, and, accordingly, distinguish between groundwater and surface water‐dominated systems. The isotopic composition of samples collected over a 36‐month period was determined using isotope ratio infrared spectrometry. The electrical conductivity of each sample was recorded to determine where freshwater is available for biota within this arid region.
3. Over 240 water samples were collected from 62 waterbodies and seven bores (groundwater wells) spanning an area of more than 250,000 km². Approximately 75% of the samples were collected by citizen scientists and 25% by research scientists.
4. Twenty groundwater‐dominated waterbodies, characterised by a small range of δ²H and δ¹⁸O values (c. ?55 to ?20‰ and c. ?9 to ?3‰, respectively) clustered around the long‐term mean composition of rainfall (δ²H = ?37.5‰, δ¹⁸O = ?6.4‰), were identified as future evolutionary refugia. These sites are likely to contain water through the most severe of droughts and will be critically important for the persistence of water‐dependent species.
5. Based on their isotopic composition, we identified 45 waterbodies (rockholes/waterholes) as temporary or ephemeral (δ²H c. ?40 to ?100‰ and δ¹⁸O c. ?4 to +25‰), that is, with no evidence of groundwater inflow. These, together with waterbodies supported by a mix of groundwater and surface water, can act as stepping stones and form part of the aquatic mosaic that is critical to supporting species in arid regions. Over two‐thirds of the waterholes sampled were very fresh (electrical conductivity <0.8 mS/cm), indicating that they provide the freshwater needed to support much of the regional aquatic and terrestrial fauna.
6. All evolutionary refugia are located within protected areas (i.e. national parks or Indigenous Protected Areas), but some are subject to the impacts of feral animal species and invasive plants. Our findings indicate where control programmes and restoration actions can be prioritised to support biodiversity conservation and climate change adaptation. Our approach, combining citizen science and isotope hydrology, can be used to identify future refugia in other remote and arid regions where water scarcity is likely to increase under global climate change.

     

Scale-dependence of fish habitat associations in a North American river system

1. Determining the appropriate measurement scale to assess habitat variables is critical for ecologists assessing biological or ecological conditions. Depth, velocity, substrate, woody debris and other fish cover variables occur on both reach and microhabitat scales, and fish habitat associations with these variables may be scale-dependent. The aim of this work was to better understand the importance of scale for fish–habitat associations with these variables in a framework consistent with environmental filtering and to test the hypothesis that habitat variable importance is scale-dependent.
2. I used prepositioned areal electrofishing in wadeable streams of the Delaware River basin to evaluate the associations of fish with the same variables summarised on different reach and microhabitat scales. The importance of scale for fish–habitat associations was assessed using two approaches that approximate an environmental filtering framework: variance partitioning with (1) ordination and (2) generalised linear mixed models.
3. Variables on both the reach and microhabitat scales explained a significant fraction of the total variation in fish community composition (p < 0.05). Variation decomposition of reach- and microhabitat-scale effects revealed 20.2% and 2.0% of all variation were due uniquely to reach and microhabitat scales, respectively. Measures of coarseness, embeddedness, amount of riffle and areal coverage of five fish cover variables were significant explanatory variables of community composition at the reach scale only (p < 0.05). Velocity and mesohabitat (amount or presence of riffle) were the only two habitat features that were significant explanatory variables of fish community composition at both the reach and microhabitat scales (p < 0.05). Individual models of species occurrence revealed similar patterns as seen with analyses of community composition.
4. For many fishes, habitat features quantified at the reach scale were more explanatory than at the microhabitat scale. Longnose dace (Rhinichthys cataractae) were more dependent upon microhabitat variables than reach-scale variables, relative to other fishes. Mean velocity at the reach scale was the most important explanatory variable for explaining fish community composition and indicated support for the concept of environmental filtering at the reach and microhabitat scales.
5. Few studies of fish occurrence have incorporated a study design and analytical framework that approximates the hierarchical nature of habitat. This study identifies important scales and predictors, demonstrates the importance of a multiscale approach, and provides support for the environmental filtering concept at the reach and microhabitat scales. These findings will allow ecologists to better account for scale-dependent habitat associations and justify the use of fish habitat associations on reach and microhabitat scales for assessing biotic integrity, restoration and conservation of fishes.

     

Broad sampling and diverse biomarkers allow characterization of nearshore particulate organic matter

Suspended particulate organic matter (POM) is a primary food source for benthic and pelagic consumers in aquatic and marine ecosystems. POM is potentially composed of many sources including phytoplankton, bacteria, zooplankton and macrophyte (seaweed and seagrass) and terrestrial detritus. The relative importance of these sources to POM consumers is debated, in large part due to differing interpretations of stable isotope and fatty acid biomarkers. We investigated POM composition in a nearshore marine ecosystem using multiple methods including visual quantification of living and detrital components, multiple stable isotope (MSI) and fatty acid (FA) analyses. Sampling was conducted at multiple temporal and spatial scales to 1) determine the range of variability in POM biomarkers, 2) quantitatively evaluate δ¹³C, δ¹⁵N, δ³⁴S and FA biomarkers with proportional abundance of putative sources and 3) determine the availability of phytoplankton, macrophytes and terrestrial carbon in nearshore POM. Variation of total FA concentration and proportions, and δ¹³C and δ³⁴S were strongly correlated to phytoplankton abundance, at tidal and seasonal timescales. Using multivariate multiple regressions, MSI and FA explained 59.6% and 89.7% of the variation in POM composition, respectively. As phytoplankton abundance increased, total FA concentration increased concurrent to δ¹³C and δ³⁴S enrichment. In high detritus samples, bacterial FA and saturated FA were proportionally higher, corresponding to depletion of δ¹³C and δ³⁴S and enrichment of δ¹⁵N. We identify MSI and FA biomarkers that are good predictors of diatom, dinoflagellate and detrital contributions to the POM. The results of this multi‐scale study show that POM composition is highly dynamic and largely driven by phytoplankton abundance, with minor contributions from terrestrial or macrophyte subsidies. This quantitative approach provides novel and critical empirical information linking POM compositional dynamics to specific biomarkers that are commonly used for tracking energy subsidies and biogeochemical cycling in aquatic ecosystems.     

Temporal variation in body composition (C : N) helps explain seasonal patterns of zooplankton δ13C

1. The stable carbon isotope ratio δ¹³C is a useful tracer of energy flow in lake food webs, and the zooplankton signature is commonly used to establish a baseline for the pelagic habitat. However, sources of temporal variability in the δ¹³C of different zooplankton taxa are rarely considered. 2. Here, we investigate to what extent temporal variation in the δ¹³C of particulate organic matter (POM) (<41 μm) and the C : N of zooplankton can explain the temporal variability in δ¹³C of freshwater zooplankton. We compare temporal patterns of δ¹³C and C : N for Daphnia, Hesperodiaptomus franciscanus and Leptodiaptomus tyrelli over a 6‐month period at four sites in two oligotrophic lakes. 3. In all three taxa, seasonal variation in zooplankton C : N explained more of the variation in zooplankton δ¹³C than did the δ¹³C of POM. This suggests that variation in the lipid content of zooplankton can strongly influence temporal variation of δ¹³C in zooplankton. 4. Using these data, we evaluate procedures that estimate the δ¹³C of only the non‐lipid component of zooplankton. If zooplankton lipids are primarily dietary in origin, than extracting lipids or ‘normalising’δ¹³C based on C : N will exclude a major dietary source, and therefore may be inappropriate. 5. We conclude that temporal variation in body composition (C : N) of zooplankton can significantly influence the temporal variation of zooplankton δ¹³C signatures.     

Allochthonous and autochthonous particulate organic matter in floodplains of the River Danube: the importance of hydrological connectivity

SUMMARY 1. The elemental composition, the proportion of living organic carbon and the carbon stable isotope signatures of particulate organic matter (POM) were determined in a large river floodplain system in order to elucidate the major carbon sources in relation to the hydrological conditions over a 13‐month period. 2. Two floodplain segments and the main channel of the River Danube downstream of Vienna (Austria), were compared on the basis of discharge and water age estimations. The more dynamic floodplain was connected to the main channel for 46% of the study period and drained up to 12% of total discharge at high water. 3. The mean C : N ratio and δ¹³C signature of the POM increased from the floodplain site that was more isolated from the river (6.6; ?33‰) to the main channel (8.4; ?25‰). At the dynamic floodplain site, the C : N ratio and the δ¹³C signature of the POM increased with hydrological connectivity (expressed as water age). 4. Only during flood events (4% frequency of occurrence), a considerable input of riverine POM was observed. This input was indicated by a C : N ratio of the POM pool of more than 10, the amount of detrital carbon (>80% of the total POM pool) and a δ¹³C signature of POM of more than ?25‰ in the dynamic floodplain. 5. Plankton derived carbon, indicated by C : N ratios less than eight and δ¹³C values lower than ?25‰, dominated the particulate organic carbon (POC) pool at both floodplain sites, emphasising the importance of local (autochthonous) production. Phytoplankton was the major plankton compartment at the dynamic site, with highest biomasses at medium water ages. 6. At the dynamic floodplain site, the Danube Restoration Project has enhanced the duration of upstream surface connection with the main channel from 4 to 46% frequency of occurrence. Therefore, the export of living POC to the main channel is now established during phases of maximum phytoplankton production and doubled the estimated total export of non‐refractory POM compared with prerestoration conditions.     

Industrial road crossings drive changes in community structure and instream habitat for freshwater fishes in the boreal forest

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Parasite infection alters host stable‐isotope composition under controlled feeding

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Modelling patterns of coexistence of three congeneric headwater fishes

1. Mechanisms driving patterns of occurrence and co-occurrence among North American freshwater fishes are poorly understood. In particular, the influence of biotic interactions on coexistence among stream reaches and their effects on regional species distribution patterns is not well understood for congeneric headwater fishes.
2. Occupancy models provide a useful framework for examining patterns of co-occurrence while also accounting for imperfect detection. Occupancy models may be extended to test for evidence that a dominant species influences the occurrence of a subordinate species and thus evaluate support for the hypothesis that species interactions drive patterns of coexistence.
3. We examined patterns of occurrence and co-occurrence at the stream-reach scale among three species of darters (Percidae: Etheostomatinae) that occupy headwater streams within a Gulf Coastal Plain drainage in the south-eastern U.S.A. We assessed species occurrences at 97 sites in first- to third-order streams on one occasion each and used data from four sub-reaches sampled with equal effort at each site to estimate species-specific detection probabilities. Following sampling, a suite of habitat variables was collected at three equidistant points along each of the three transects established within a sub-reach. Coarse (stream-segment, catchment, network) scale variables were also incorporated using geospatial data. Single-species and two-species occupancy models were used to examine patterns of occupancy and coexistence.
4. The occupancy of each species was influenced by distinct habitat variables. Goldstripe darters (Etheostoma parvipinne) were constrained by a stream size gradient, groundwater input appeared to influence the occurrence of Yazoo darters (Etheostoma raneyi), and local habitat heterogeneity (e.g. variation in depth and current velocity) appeared to influence the occupancy of redspot darters (Etheostoma artesiae).
5. We found no evidence that the presence of one species influenced the occurrence of another within a stream-reach based on two-species occupancy models. Rather, species co-occurrences were best explained as independent occurrences within a stream-reach according to species-specific habitat associations.
6. Occupancy modelling may provide a suitable framework for evaluating the influence of biotic interactions among congeneric stream fishes along species-specific habitat gradients at the stream reach scale. Our study offers insight into how habitat variation can influence coexistence of potential competitors across a large river system.

     

Environmental drivers of macroinvertebrate communities in high Arctic rivers (Svalbard)

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Distribution and production of Chironomidae (Diptera) in the lower course of the Grabia River (Central Poland)

SUMMARY.

• 1 A fifth-order section of the Grabia River was investigated over two years: 1984/85 (low water level) and 1985/86 (high spate). Chironomidae (thirty-nine species) dominated the macrobenthos in both years.
• 2 In 1984/85 (mean annual water temperature 10.2°C), the number of Chironomidae species in coarse sediment was highest in spring (thirty-three species) while in sand it was highest in summer (fifteen species). A decrease in species richness was recorded in autumn and winter at each of the established sites. The estimated Chironomidae production for the whole river section was 5.37 g dry wt m^?2 yr^?1, but it differed widely amongst the study sites, ranging from 3.75 to 12.07 g m^?2 yr^?l.
• 3 In 1984/85 (mean annual temperature 8.1°C) there occurred a summer spate which was more intense than any recorded over the previous 20 years. This substantially reduced the number of species, the greatest reduction being in the coarse sediment, which was buried with sand during the spate. Production for the whole section decreased to 1.17 g m^?2 yr^?1, and the variability amongst sites ranged from 1.04 to 1.45 g m^?2 yr^?1.

     

Ecological engineering and aquatic connectivity: a new perspective from beaver‐modified wetlands

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