Occurrence patterns of Afrotropical ticks (Acari: Ixodidae) in the climate space are not correlated with their taxonomic relationships

Foci of tick species occur at large spatial scales. They are intrinsically difficult to detect because the effect of geographical factors affecting conceptual influence of climate gradients. Here we use a large dataset of occurrences of ticks in the Afrotropical region to outline the main associations of those tick species with the climate space. Using a principal components reduction of monthly temperature and rainfall values over the Afrotropical region, we describe and compare the climate spaces of ticks in a gridded climate space. The dendrogram of distances among taxa according to occurrences in the climate niche is used to draw functional groups, or clusters of species with similar occurrences in the climate space, as different from morphologically derived (taxonomical) groups. We aim to further define the drivers of species richness and endemism at such a grid as well as niche similarities (climate space overlap) among species. Groups of species, as defined from morphological traits alone, are uncorrelated with functional clusters. Taxonomically related species occur separately in the climate gradients. Species belonging to the same functional group share more niche among them than with species in other functional groups. However, niche equivalency is also low for species within the same taxonomic cluster. Thus, taxa evolving from the same lineage tend to maximize the occupancy of the climate space and avoid overlaps with other species of the same taxonomic group. Richness values are drawn across the gradient of seasonal variation of temperature, higher values observed in a portion of the climate space with low thermal seasonality. Richness and endemism values are weakly correlated with mean values of temperature and rainfall. The most parsimonious explanation for the different taxonomic groups that exhibit common patterns of climate space subdivision is that they have a shared biogeographic history acting over a group of ancestrally co-distributed organisms.     

The taxonomy of Pilayella littoralis (L.) Kjellm. (Phaeophyta,Ectocarpales) in the British Isles,a numerical approach

The taxonomy of Pilayella littoralis (L.) Kjellm. is confused due to the extreme variability of the species. A numerical taxonomic study has been carried out using computer clustering techniques on 71 morphological and ecological characters with 163 plants from a wide range of habitats in Britain, and the status of the clusters formed scrutinized with reference to the original data. On this basis certain clusters were grouped together as seasonal variants of similar entities. Estuarine plants tend to have in common a number of characteristics which separate them from those collected in marine habitats, such as a much higher incidence of opposite branching and considerably finer filaments. A number of other environmental gradients other than salinity can be associated with these characteristics, for example substrate, exposure etc. The fact that seasonal morphological variation is also common, especially in marine populations, underlines the complexity of the relationship between environment and form in the species, and it is concluded that the establishment of a practicable natural classification of intraspecific variation in P. littoralis is impossible.     

A new genus of alonine chydorid cladocerans from athalassic saline waters of New South Wales,Australia

A new genus (Celsinotum) and three new species are described from intermittent athalassic saline waters in the Paroo region of northwest New South Wales, which have TDS varying from 2.8 to 14.0 g l^-1. The species are large, thin, high-bodied, and have a pronounced keel on the shell but not on the head. The marginal armature of the postabdomen consists entirely of clusters of fine spinules. Most strikingly, the males have 12 terminal aesthetascs on the antennule, and in addition have 5 or 6 equally long accessory aesthetascs arising laterally. Alona taraporevalae from India presumably also has this character, but a comparison of the two species indicates they are not closely related.The taxa bear a general similarity to Alona diaphana from Australia, but a close comparison shows that they, too, are unrelated. A. diaphana has a prominent spine arising from the basal segment of the antennal exopod, the two IDL (= inner distal lobe) setae on trunklimb I have a much coarser setulation distally than in Celsinotum, and on the postabdomen the postanal portion is always considerably longer than the anal, and the marginal armament consists of single setae distally and clusters of only a few setae proximally. Besides, the species is smaller, the body is wider and less high, and the shell although weakly ridged is not keeled. The male has 9 terminal aesthetascs and no accessory lateral ones.In athalassic saline waters around the world the number of anomopod species declines negative exponentially in relation to salinity. Many of the freshwater species persist into the 3 to 10 range without any difficulty, some occur in abundance up to 30, and a few even extend into the hypersaline range. Chydorids, though, except for a very few species, do not tolerate salinities higher than about 15, and none of them seem adapted to these salinities and confined to them. Celsinotum, though, possibly is so adapted, as it did not occur in other basins of the region with lower salinities, and it is not presently known from other regions.Having different but closely related congeneric taxa in nearby lakes of the same region seems surprising. The three species of Celsinotum are very similar in most details of morphology, but they vary significantly in body proportions, the number of denticle clusters on the postanal portion of the postabdomen, and in such seemingly minor details as the amount of expansion of the labral plate. Such taxonomic differentiation, which has been observed in other groups of organisms as well, is believed to have arisen from the extreme temporal isolation of these waterbodies, those in the Paroo region normally containing water only once every 5 to 20 years.     

High diversity of pipistrelloid bats (Vespertilionidae: Hypsugo,Neoromicia, and Pipistrellus) in a West African rainforest with the description of a new species

The pipistrelloid bats (genera Hypsugo, Neoromicia, and Pipistrellus) of Africa have been poorly studied, partly as a result of problems associated with species identification. This paper examines the diversity of pipistrelloid bats from Mount Nimba, a biodiversity hotspot in the Upper Guinean rainforest zone. Traditional morphometrics, the structure of the baculum, and sequences of the cytochrome oxidase subunit I (COI) gene were used to identify taxa. Species richness was exceptionally high and included at least ten taxa identifiable on molecular grounds. Of these, existing names could be assigned to six taxa. A seventh taxon was described as a species new to science, Neoromicia roseveari sp. nov. , and was distinguished on molecular grounds, craniodental morphology, and baculum structure. The remaining taxa may refer to as‐yet undescribed species but we lacked sufficient material to formally describe them here. The high species richness of pipistrelloid bats on Mount Nimba may be associated with the transition zone from lowland rainforest to moist savannah. © 2013 The Linnean Society of London     

THE SPECIES OF THE BIRDS-OF-PARADISE (PARADISAEIDAE): APPLYING THE PHYLOGENETIC SPECIES CONCEPT TO A COMPLEX PATTERN OF DIVERSIFICATION

Abstract The phylogenetic species concept is applied for the first time to a major radiation of birds, the birds-of-paradise (Paradisaeidae) of Australasia. Using the biological species concept, previous workers have postulated approximately 40–42 species in the family. Of these, approximately 13 are monotypic and 27 are polytypic with about 100 subspecies. Phylogenetic species are irreducible (basal) clusters of organisms (terminal taxa) that are diagnosably distinct from other such clusters. Within the context of this concept, approximately 90 species of paradisaeids are postulated to have diversified within Australasia. The phylogenetic species concept more accurately describes evolutionary diversity within the family and provides a better theoretical and empirical framework for analysing speciation, historical biogeography and patterns of morphological, behavioral and ecological diversification within this group than does the biological species concept.     

Taxonomic complexity,population genetics,and plant conservation in Scotland

Summary

Groups of plants that are undergoing active diversification often do not fall into neat and tidy taxonomies. In such groups it can sometimes be very difficult to establish what does, and what does not, constitute a species. This presents problems for species-based conservation programmes that are based around prioritised species-lists (e.g. the UK Biodiversity Action Plans; BAPs), particularly as the inclusion or exclusion of taxa on these lists largely determines the allocation of conservation resources. This is an important issue as almost half of the BAP priority higher plant species for which Scotland has prime responsibility are taxonomically controversial.

Recent research using population genetic approaches to tackle some taxonomically complex plant groups has enhanced our understanding of their biology. Such approaches provide objective and independent assessments of whether a given entity is distinct or not. This information can then be used to contribute towards the decision making process of which taxa to prioritise for conservation, and address specific questions regarding BAP listed species. In the long term, however, a broader issue needs tackling. Actively evolving groups often contain a series of localised lineages, as well as complex populations that exhibit atypical levels of morphological diversity. These types of diversity do not fit well into a ‘standard’ species-based conservation system. In most cases protection will best be supplied by designated site protection or wider countryside habitat schemes. Where additional protection is need, a conservation policy is required that accepts the diversity in these actively evolving groups for what it is, rather than trying to squeeze it into conservation legislation derived for taxa whose delimitation is routine.     

Floristic elements in European vascular plants: an analysis based on Atlas Florae Europaeae

Aim To identify floristic elements in the European flora by an analysis of the distributions of species and species groups mapped in Atlas Florae Europaeae. Location Europe, as defined by Flora Europaea. Methods We analysed the native distributions of 2762 species and 33 species’ aggregates from 79 families, which represent c. 20% of the European flora. The distributional data base, derived from Atlas Florae Europaeae, includes records from 4420 50 × 50‐km UTM grid squares. We classified species into floristic elements by a three‐stage clustering procedure, which consisted of: (1) constructing a dissimilarity hierarchy by complete linkage clustering, using a distance measure based on Jaccard’s coefficient; (2) cutting the hierarchical tree at the 0.95 level to create initial clusters, and forcing small clusters to link with larger ones until the sum of within‐group pairwise distances exceeded a threshold value; and (3) checking the allocation of all species to the redefined clusters and reassigning species if appropriate, using the cosine of the angle between the species and cluster centres to measure the similarity of species to clusters. Results The clustering procedure classified 2793 taxa into 18 floristic elements, which included between 66 and 289 taxa; two species had unique, non‐overlapping distributions and could not be classified. Main conclusions The analysis highlights the floristic diversity of the mountains of central and southern Europe, and of the Mediterranean region. The floristic elements of northern latitudes and the temperate lowlands tend to be composed of wide‐ranging species and include only a low proportion of European endemics. The montane elements, including those centred on montane areas in the Mediterranean region, are composed predominantly of perennial species and include high or very high proportions of European endemics. Classifications that recognize one ‘Alpine’ and one ‘Mediterranean’ biogeographical zone in Europe fail to reflect this floristic diversity.     

Distribution and phylogenetic relationships of Australian glow-worms Arachnocampa (Diptera, Keroplatidae)

Glow-worms are bioluminescent fly larvae (Order Diptera, genus Arachnocampa) found only in Australia and New Zealand. Their core habitat is rainforest gullies and wet caves. Eight species are present in Australia; five of them have been recently described. The geographic distribution of species in Australia encompasses the montane regions of the eastern Australian coastline from the Wet Tropics region of northern Queensland to the cool temperate and montane rainforests of southern Australia and Tasmania. Phylogenetic trees based upon partial sequences of the mitochondrial genes cytochrome oxidase II and 16S mtDNA show that populations tend to be clustered into allopatric geographic groups showing overall concordance with the known species distributions. The deepest division is between the cool-adapted southern subgenus, Lucifera, and the more widespread subgenus, Campara. Lucifera comprises the sister groups, A. tasmaniensis, from Tasmania and the newly described species, A. buffaloensis, found in a high-altitude cave at Mt Buffalo in the Australian Alps in Victoria. The remaining Australian glow-worms in subgenus Campara are distributed in a swathe of geographic clusters that extend from the Wet Tropics in northern Queensland to the temperate forests of southern Victoria. Samples from caves and rainforests within any one geographic location tended to cluster together within a clade. We suggest that the morphological differences between hypogean (cave) and epigean (surface) glow-worm larvae are facultative adaptations to local microclimatic conditions rather than due to the presence of cryptic species in caves.     

Repeated convergent evolution of parthenogenesis in Acariformes (Acari)

The existence of old species‐rich parthenogenetic taxa is a conundrum in evolutionary biology. Such taxa point to ancient parthenogenetic radiations resulting in morphologically distinct species. Ancient parthenogenetic taxa have been proposed to exist in bdelloid rotifers, darwinulid ostracods, and in several taxa of acariform mites (Acariformes, Acari), especially in oribatid mites (Oribatida, Acari). Here, we investigate the diversification of Acariformes and their ancestral mode of reproduction using 18S rRNA. Because parthenogenetic taxa tend to be more frequent in phylogenetically old taxa of Acariformes, we sequenced a wide range of members of this taxon, including early‐derivative taxa of Prostigmata, Astigmata, Endeostigmata, and Oribatida. Ancestral character state reconstruction indicated that (a) Acariformes as well as Oribatida evolved from a sexual ancestor, (b) the primary mode of reproduction during evolution of Acariformes was sexual; however, species‐rich parthenogenetic taxa radiated independently at least four times (in Brachychthonioidea (Oribatida), Enarthronota (Oribatida), and twice in Nothrina (Oribatida), (c) parthenogenesis additionally evolved frequently in species‐poor taxa, for example, Tectocepheus, Oppiella, Rostrozetes, Limnozetes, and Atropacarus, and (d) sexual reproduction likely re‐evolved at least three times from species‐rich parthenogenetic clusters, in Crotonia (Nothrina), in Mesoplophora/Apoplophora (Mesoplophoridae, Enarthronota), and in Sphaerochthonius/Prototritia (Protoplophoridae, Enarthronota). We discuss possible reasons that favored the frequent diversification of parthenogenetic taxa including the continuous long‐term availability of dead organic matter resources as well as generalist feeding of species as indicated by natural variations in stable isotope ratios.     

Indicator taxa revisited: useful for conservation planning?

Aim Indicators for biodiversity are needed to facilitate the identification of complementary reserve networks for biodiversity conservation. One widely adopted approach is to use indicator taxa, i.e. a single taxon such as birds or butterflies, despite the ongoing debate regarding their usefulness as indicators of broader biodiversity. Here we assess several aspects, such as influence of species number, of indicator taxa for three extensive data sets to improve our insight into the effectiveness of indicator taxa. Location Denmark, sub‐Saharan Africa and Uganda. Methods First, we investigate to what extent variation in species number between indicator taxa (e.g. 488 mammal spp. vs. 210 snake spp.) is causing the differences in effectiveness between indicator taxa. Second, we investigate whether indicator taxa are capable of outperforming indicator groups composed of random sets of species chosen among all taxa. Finally, we assess the correlation of specific properties such as mean range size of the indicator taxa to their effectiveness. We investigate these aspects of the effectiveness of indicator taxa through the separate analysis of three distinct distributional species data sets: sub‐Saharan Africa (4,039 spp.), Denmark (847 spp.) and Uganda (2,822 spp.). Results We overall found that indicator taxa comprising a greater number of species tend to perform better than indicator taxa with fewer species (e.g. 488 mammal spp. outperform 210 snake spp.), although there are some exceptions. Second, we found most indicator taxa to perform worse than indicator groups consisting of a comparable number of species selected among all taxa. Finally, the effectiveness of indicator taxa was seen to correlate poorly with selected distributional properties such as mean range size of the indicator taxa, suggesting that it is difficult to predict which taxa are efficient biodiversity indicators. Main conclusions Overall, these findings might suggest that focus should simply be on increasing the number of species among all taxa as basis for priority setting, rather than striving to obtain the ‘perfect’ indicator taxa.     

ACACIA CONSTRICTA (FABACEAE: MIMOSOIDEAE) AND RELATED SPECIES FROM THE SOUTHWESTERN U.S. AND MEXICO

Vegetative, fruit, and floral characters of more than 200 herbarium specimens of Acacia constricta and closely related species from the Southwestern U.S. and Mexico were scored and analyzed by principal components analysis (PCA) and stepwise discriminant analysis (SDA). The results show that all of the 5 species of this group are distinct and form nonoverlapping groups in plots of the first three principal components. All taxa were found to be quite homogeneous as indicated by the tight clusters formed in the PCA plots. Acacia pacensis, whose relationship to the species of this group has been questioned, is confirmed to be more closely related to A. farnesiana and related species. Some specimens with a combination of characters from A. constricta, A. neovernicosa, and A. schottii were positioned intermediate to the putative parental species groups in the PCA and SDA plots, suggesting hybridization among these taxa.     

Responses of ants to disturbance in Australia,with particular reference to functional groups

Abstract Ants are widely used as bioindicators in environmental assessment in Australia, partly because the responses of ant communities to disturbance are relatively well understood. In particular, the use of functional groups has provided a predictive framework for analysing ant community responses to disturbance in the absence of reliable information on the responses of individual species. Here we review 45 studies of the responses of Australian ant communities to disturbance, in order to: (i) identify individual species or species‐groups that respond consistently to disturbance; and (ii) examine the usefulness of the functional group scheme as a framework for predicting ant community responses under different disturbance regimes in different biogeographical regions. The most common forms of disturbance in our studies were fire (17 studies), mining (12; mostly studies of minesite restoration) and grazing (7), with other disturbances including clearing, logging, flooding, recreation, urbanization and farming. Responses of individual species were inevitably variable because of differences in vegetation type, severity of disturbance and time since disturbance. However, we identified a range of widespread species that showed predictable responses, including species of the metallica group of Rhytidoponera in temperate Australia (‘increasers’ in relation to disturbance), species of the terebrans and denticulatus groups of Camponotus (increasers), the aeneovirens group of Melophorus (increasers) from the arid zone, and Iridomyrmex pallidus (increaser) from the monsoonal region. The functional group scheme assessed here was not designed specifically in the context of disturbance, but nevertheless in some situations provides a useful framework for analysing ant community responses. Three distinct syndromes of functional group responses can be recognized. First, Dominant Dolichoderinae and Hot Climate Specialists are groups that prefer open environments, and tend to be favoured by low levels of disturbance in well‐forested habitats. Second, Opportunists and often also Generalized Myrmicinae are broadly adapted taxa with wide habitat tolerances, but are particularly sensitive to competitive interactions such that their responses oppose those of Dominant Dolichoderinae. Finally, Cryptic Species and Specialist Predators have highly specialized requirements that make them especially sensitive to disturbance. Functional groups are of most use in situations where disturbance causes substantial change in habitat structure, particularly in the ground‐layer. Functional groups are of least use in very open habitats, where disturbance merely increases what is already extensive bare ground, and has relatively little impact on microclimate. The ant functional group scheme can play an important role in assessing disturbance in mesic Australia, but may be of more limited use for this in the arid zone.     

NEW WORLD JUGLANDACEAE. II. HICKORY NUT OILS,PHENETIC SIMILARITIES,AND EVOLUTIONARY IMPLICATIONS IN THE GENUS CARYA

Gas chromatographic analyses of the nut oils of 155 samples, representing 15 taxa of Carya, confirm the basic uniformity of fatty-acid composition within the walnut family. All taxa contain small amounts of the saturated fatty acids—palmitic and stearic—and variable amounts of the unsaturated oleic and linoleic acids, and at least trace amounts of linolenic. Quantitative differences in the relative amounts of the five fatty acids support the morphologic recognition of two sections within the genus. Members of the section Carya are characterized by higher linoleic and lower oleic acid percentages than are those of section Apocarya. It is also true, however, that tetraploids of section Carya tend to have higher linoleic and lower oleic acid percentages than diploids within the same section. Numerical analyses of the oil data reveal close similarities between certain members of the more “primitive” section Apocarya and the diploid members of section Carya. The highly heterogeneous assemblage within section Apocarya could be split into three groups on the basis of oil data. It is equally obvious, however, that the American taxa of the genus Carya have had a long and reticulate phylogeny and that recognition of additional categories above the species level would not result in natural assemblages.     

Cryptic dioecy and leaky dioecy in endemic species of Dombeya (Sterculiaceae) on La Re´union

The high frequency of dioecy on oceanic islands such as Hawaii and New Zealand has attracted a great deal of attention from plant evolutionary biologists. One reason suggested for the high prevalence of dioecy on oceanic islands is that taxa considered truly dioecious may have occasional hermaphrodite flowers, i.e., show leaky dioecy. In this study, we quantified the presence and distribution of leaky dioecy in a group of congeneric endemic species of the genus Dombeya (Sterculiaceae) on La Re´union island (Indian Ocean). All eight species show cryptic dioecy. Five species show strict dioecy and three species show leaky dioecy due to the presence of male trees that set fruit. Species with strict dioecy and large populations tend to occur in mid- to high-altitude moist tropical cloud forest, whereas species in smaller populations at lower altitude and in semidry tropical forest tend to show leaky dioecy. Two reasons for this differential distribution of strict dioecy and leaky dioecy are discussed. First, environmental variation along the altitudinal gradient, biotic and/or abiotic, may influence the breeding system. Second, leaky dioecy may be favored in lowland populations due to the small size and disturbed nature of such populations.     

Nest and colony-specific spectra in the weaver ant Oecophylla smaragdina

Animals in social groups need to differentiate between group members and others. In very large groups, such as those formed by many ant species, it is not possible to rely on individually specific cues to identify colonymates. Instead, recognition must be based on the colony-specific cues. Individual ant colonies tend to have a specific chemical gestalt that is maintained by the continual exchange of chemicals between workers. In very large polydomous colonies, the exchange of chemicals may be limited between nests within the colony, resulting in inter-nest variation in colony odour that might hinder identification of colonymates or conspecific intruders. We used near-infrared spectroscopy to explore variation in the chemical profile between and within colonies of the weaver ant Oecophylla smaragdina. We found that differences between colonies were reflected in the position, amplitude and width of spectral peaks, while differences between nests within colonies were reflected mainly in amplitude. Furthermore, in the context of colonymate recognition, the behaviour of the ants themselves was positively correlated with colony-specific spectral characteristics, rather than with nest-specific characteristics. Thus, colony spectra have features that are not obscured by intra-colonial variation and may potentially encode the chemical characteristics used by workers to identify colonymates.     

Taxonomic surrogacy in biodiversity assessments,and the meaning of Linnaean ranks

The majority of biodiversity assessments use species as the base unit. Recently, a series of studies have suggested replacing numbers of species with higher ranked taxa (genera, families, etc.); a method known as taxonomic surrogacy that has an important potential to save time and resources in assesments of biological diversity. We examine the relationships between taxa and ranks, and suggest that species/higher taxon exchanges are founded on misconceptions about the properties of Linnaean classification. Rank allocations in current classifications constitute a heterogeneous mixture of various historical and contemporary views. Even if all taxa were monophyletic, those referred to the same rank would simply denote separate clades without further equivalence. We conclude that they are no more comparable than any other, non‐nested taxa, such as, for example, the genus Rattus and the phylum Arthropoda, and that taxonomic surrogacy lacks justification. These problems are also illustrated with data of polychaetous annelid worms from a broad‐scale study of benthic biodiversity and species distributions in the Irish Sea. A recent consensus phylogeny for polychaetes is used to provide three different family‐level classifications of polychaetes. We use families as a surrogate for species, and present Shannon‐Wiener diversity indices for the different sites and the three different classifications, showing how the diversity measures rely on subjective rank allocations.     

Variability in Foliar Essential Oils among Different Morphotypes of Lantana Species Complexes,and Its Taxonomic and Ecological Significance

The genus Lantana has many species complexes, and L. camara is one of the aggressive alien weedy species complexes; species delimitation in these complexes is a nightmare for taxonomists. We examined the diversity in the chemical composition of foliar essential oils among morphotypes of Lantana species complexes inhabiting the same ecological gradient, and its taxonomic and ecological significance. The yields of essential oils varied from 0.1 to 0.79% in foliar hydrodistillates of eleven morphotypes, and a total of 39 chemical constituents were detected by GC/MS. The quantitative and qualitative variability in the composition of essential oils among morphotypes was very high, and hence they represent chemotypes. The diversity observed in the composition of essential oils appears to be of genetic origin and thus of taxonomic value. The formation of distinct clusters and sub‐clusters at high distance cluster combine values also substantiates that the patterns of distribution of chemical constituents among morphotypes can be used in delimiting species and infraspecific taxa within the species complexes. The presence of β‐caryophyllene and other such compounds, which are known to prevent herbivory, in morphotypes of Lantana species complexes suggest that these compounds may provide selective advantage to Lantana over native species in the invasion of new and disturbed habitats.     

DNA barcodes as a tool in biodiversity research: testing pre-existing taxonomic hypotheses in Delphic Apollo butterflies (Lepidoptera,Papilionidae)

Numerous studies have demonstrated that DNA barcoding is an effective tool for detecting DNA clusters, which can be viewed as operational taxonomic units (OTUs), useful for biodiversity research. Frequently, the OTUs in these studies remained unnamed, not connected with pre-existing taxonomic hypotheses, and thus did not really contribute to feasible estimation of species number and adjustment of species boundaries. For the majority of organisms, taxonomy is very complicated with numerous, often contradictory interpretations of the same characters, which may result in several competing checklists using different specific and subspecific names to describe the same sets of populations. The highly species-rich genus Parnassius (Lepidoptera: Papilionidae) is but one example, such as several mutually exclusive taxonomic systems have been suggested to describe the phenotypic diversity found among its populations. Here we provide an explicit flow chart describing how the DNA barcodes can be combined with the existing knowledge of morphology-based taxonomy and geography (sympatry versus allopatry) of the studied populations in order to support, reject or modify the pre-existing taxonomic hypotheses. We then apply this flow chart to reorganize the taxa within the Parnassius delphius species group, solving long-standing taxonomic problems.