Comparative molecular phylogeny and evolution of sex chromosome DNA sequences in the family Canidae (Mammalia: Carnivora)

To investigate the molecular phylogeny and evolution of the family Canidae, nucleotide sequences of the zinc-finger-protein gene on the Y chromosome (ZFY, 924-1146 bp) and its homologous gene on the X chromosome (ZFX, 834-839 bp) for twelve canid species were determined. The phylogenetic relationships among species reconstructed by the paternal ZFY sequences closely agreed with those by mtDNA and autosomal DNA trees in previous reports, and strongly supported the phylogenetic affinity between the wolf-like canids clade and the South American canids clade. However, the branching order of some species differed between phylogenies of ZFY and ZFX genes: Cuon alpinus and Canis mesomelas were included in the wolf-like canid clades in the ZFY tree, whereas both species were clustered in a group of Chrysocyon brachyurus and Speothos venaticus in the ZFX tree. The topology difference between ZFY and ZFX trees may have resulted from the two-times higher substitution rate of the former than the latter, which was clarified in the present study. In addition, two types of transposable element sequence (SINE-I and SINE-II) were found to occur in the ZFY final intron of the twelve canid species examined. Because the SINE-I sequences were shared by all the species, they may have been inserted into the ZFY of the common ancestor before species radiation in Canidae. By contract, SINE-II found in only Canis aureus could have been inserted into ZFY independently after the speciation. The molecular diversity of SINE sequences of Canidae reflects evolutionary history of the species radiation.     

Systematics and evolution of the subfamily Gerbillinae (Mammalia, Rodentia, Muridae)

Although they represent a quarter of the mammalian species, the evolutionary relationships among as well as within, the main murid lineages are still controversial. The subfamily Gerbillinae is no exception as previous studies based on morphological, karyotypical, and allozyme characters are highly incongruent. Here, we present the first molecular phylogeny for gerbils based on cytochrome b and 12S rRNA mitochondrial genes. Results are largely congruent between the two genes as well as with the concatenated data set with most of the nodes being well-supported. Based on the topologies retrieved here, we (1) propose the identification of three main clades, (2) support the split of Tatera genus into an Asian and an African group, the latter including Gerbillurus species, and (3) provide some evidence towards the inaccuracy of subgeneric divisions within both Gerbillus and Meriones. In addition, the sharp contrast between the genetic characters and morphological data sets suggest high levels of convergence, probably as a result of strong environmental constraints imposed on these rodents adapted to arid and semi-arid regions. Finally, molecular datings for the various cladogenetic events are in good agreement with the known gerbilline fossil record and support an African origin with subsequent migrations to Asia.     

Evolutionary history of tree squirrels (Rodentia,Sciurini) based on multilocus phylogeny reconstruction

Pe?nerová, P. & Martínková, N. (2012). Evolutionary history of tree squirrels (Rodentia, Sciurini) based on multilocus phylogeny reconstruction. —Zoologica Scripta, 41, 211–219. Tree squirrels of the tribe Sciurini represent a group with unresolved phylogenetic relationships in gene trees. We used partial sequences of mitochondrial genes for 12S rRNA, 16S rRNA, cytochrome b and d‐loop, and nuclear irbp, c‐myc exon 2 and 3 and rag1 genes to reconstruct phylogenetic relationships within the tribe, maximizing the number of analysed species. Bayesian inference analysis of the concatenated sequences revealed common trends that were similar to those retrieved with supertree reconstruction. We confirmed congruence between phylogeny and zoogeography. The first group that diverged from a common ancestor was genus Tamiasciurus, followed by Palaearctic Sciurus and Indomalayan Rheithrosciurus macrotis. Nearctic and Neotropical Sciurus species formed a monophyletic group that included Microsciurus and Syntheosciurus. Neotropical Sciurini were monophyletic with a putative exception of Syntheosciurus brochus that was included in a polychotomy with Nearctic Sciurus in supertree analyses. Our data indicate that Sciurini tree squirrels originated in the northern hemisphere and ancestors of contemporary taxa attained their current distribution through overland colonization from the nearest continent rather than through trans‐Pacific dispersal.     

The evolution of fossoriality and the adaptive role of horns in the Mylagaulidae (Mammalia: Rodentia)

Ceratogaulus, a member of the extinct fossorial rodent clade Mylagaulidae, is the only known rodent with horns and the smallest known horned mammal. The function of the large, dorsally projecting nasal horns on this burrowing animal has been the subject of wide speculation among palaeontologists; suggested uses range from sexual combat to burrowing. Mammals have evolved adaptations for digging repeatedly; horns and other cranial appendages have also evolved numerous times. These two adaptations co-occur in mammals extremely rarely: only two fossil genera (Ceratogaulus and the xenarthran Peltephilus) and no extant mammals are both horned and fossorial. Tracing the evolution of fossoriality in aplodontoid rodents (the larger clade to which Ceratogaulus belongs) reveals that Ceratogaulus descended from ancestors who dug by head-lifting. Whereas this suggests an obvious explanation for the horns of this rodent, evidence from functional morphology, anatomy, phylogeny and geologic context indicates that the horns in Ceratogaulus were used for defence, rather than digging, and evolved to offset increased predation costs associated with spending more time foraging above ground as body size increased.     

Mitochondrial DNA Phylogeography and Comparative Cytogenetics of the Springhare, Pedetes capensis (Mammalia: Rodentia)

Variation in mitochondrial DNA (mtDNA) was used together with comparative cytogenetics to examine the evolutionary history and taxonomic status of an African hystricomorphous rodent, the springhare Pedetes capensis. The mtDNA phylogeographic structure showed that the majority of the southern African populations (P. c. capensis) are characterized by unique but closely related maternal lineages. Based on restriction endonuclease fragment analysis, the east African populations (P. c. surdaster) appear more structured and are distinguished from those in southern Africa by an average sequence divergence of 5.52% (±1.4%). This marked divergence is concordant with results of the cytogenetic study. Specimens from southern Africa have 2n = 38, and those from east Africa 2n = 40. The change in diploid number is due to a single centric fusion. It is suggested that the closure of the Brachystegia or miombo woodland (20,000–10,000 B.P.), which delimits contemporary springhare ranges, may have been too recent to account for the accumulated genetic differences that distinguish these taxa. While rifting and associated habitat changes in east Africa can be invoked to explain genetic structure in this region, the southern African springhare populations, which have a high incidence of locality-specific haplotypes, show a shallow phylogeographic structure, in keeping with a relatively recent range expansion from smaller source populations. Given the magnitude of genetic, morphological, and ethological differences between the two geographic isolates, we believe that there is strong support for the elevation of the east African and southern African springhare populations to full species status, thus supporting earlier taxonomic treatments of this rodent.     

Diversity of tuco-tucos (Ctenomys, Rodentia) in the Northeastern wetlands from Argentina: mitochondrial phylogeny and chromosomal evolution

Tuco-tucos (small subterranean rodents of the genus Ctenomys) that inhabit sandy soils of the area under the influence of the second largest wetland of South America, in Northeastern Argentina (Corrientes province), are a complex of species and forms whose taxonomic status were not defined, nor are the evolutionary relationships among them. The tuco-tuco populations of this area exhibit one of the most ample grades of chromosomal variability within the genus. In order to analyze evolutionary relationships within the Corrientes group and its chromosomal variability, we completed the missing karyotypic information and performed a phylogenetic analysis. We obtained partial sequences of three mitochondrial markers: D-loop, cytochrome b and cytochrome oxidase I. The Corrientes group was monophyletic and split into three main clades that grouped related karyomorphs. The phylogeny suggested an ancestral condition of the karyomorph with diploid number (2n) 70 and fundamental number (FN) 84 that has evolved mainly via reductions of the FN although amplifications occurred in certain lineages. We discuss the relationship between patterns of chromosomal variability and species and groups boundaries. From the three main clades the one named iberá exhibited a remarkable karyotypic homogeneity, and could be considered as an independent and cohesive evolutionary lineage. On the contrary, the former recognized species C. dorbignyi is a polyphyletic lineage and hence its systematic classification should be reviewed.     

New Late Miocene murids from China (Mammalia, Rodentia)

New murids of Late Miocene (medial Baodean Chinese Mammal Unit) age from Inner Mongolia, northern China, and from Yunnan Province, southern China, are described. Hansdebruijnia perpusilla nov. sp. represents the earliest known and morphologically most primitive species of the genus, which is known from the latest Miocene of Europe and western Asia. The new species suggests an eastern Palaearctic origin of Hansdebruijnia. “Progonomys” yunnanensisQIU and STORCH, 1990 from Lufeng, Yunnan Province, is referred to Linomys nov. gen. New samples from Leilao, Yuanmou County, Yunnan Province, are included in this species, although this population is somewhat more primitive than that from Lufeng. Leilaomys zhudingi nov. gen. and sp. from Leilao shows a unique combination of apomorphic and plesiomorphic characters, which suggest an early divergence from the murid stem. The new findings indicate that our knowledge of the early radiation of murids in southeast Asia is still in its infancy.     

Karyotypes of field mice of the genus Apodemus(Mammalia:Rodentia) from China

Karyotypes of four Chinese species of field mice of the genus Apodemus were examined, including Apodemus chevrieri(diploid chromosome number,2 n=48, fundamental number of autosomal arms,FNa=56), A. draco(2 n=48, FNa=48), A. ilex(2 n=48, FNa=48), and A. latronum(2 n=48, FNa=48).Karyotypes of A. chevrieri, A. draco, and A. ilex are reported here for the first time, providing useful information for their species taxonomy. Determining the karyotypes of all species of Apodemus in Asia,both in this and previous studies, provides a solid overview of the chromosome evolution and species differentiation of the genus in East Asia. In addition to allopatric speciation, chromosome rearrangements likely played an important role in the formation of the four Apodemus species groups as well as speciation within each group in East Asia. For example, increased centromeric heterochromatin in A. latronum may have contributed to the post-mating reproductive isolation from the A. draco-A. ilex-A. semotus clade.     

新疆准噶尔盆地北缘中中新世早期的原圆齿鼠(Promylagaulinae,Mylagaulidae)(英文)

<正>1988年吴文裕描述了产自新疆准噶尔盆地北缘铁尔斯哈巴合地点哈拉玛盖组下部层位的一枚圆齿鼠的P4,定名为Sinomylagaulus halamagaiensis。1997年中国科学院古脊椎动物与古人类研究所新疆考察队又在铁尔斯哈巴合的哈拉玛盖组下部层位中采集到两枚p4。1988年的研究工作仅依据一枚上前臼齿(P4),标本的稀缺决定了当时研究成果的局限性。新材料无疑为认识新疆的圆齿鼠类提供了新的信息     

Molecular Relationships Among Octodontidae (Mammalia: Rodentia: Caviomorpha)

We examined ten species of octodontid rodents and representatives of three outgroups in a complete 13 × 13 DNA-hybridization matrix. The results were indexed as differences in median melting-point depressions (T,_ms), symmetrized, subjected to phylogenetic analysis using FITCH, bootstrapped, and exhaustively taxon-jackknifed. Within Octodontidae, four clades were recovered with 100% bootstrap and complete jackknife support: Tympanoctomys barrerae with Octomys mimax, Octodontomys gliroides alone, Octodon spp., and Aconaemys spp. with Spalacopus cyanus; the latter two clades were closer to each other than either was to Octodontomys or Octomys-Tympanoctomys, but were slightly nearer to and united with Octodontomys, with 89% bootstrap support. However, relationships among the three Aconaemys species and Spalacopus were not completely resolved by our experiments. Ctenomys coyhaiquensis, Abrocoma bennetti, and Lagostomus maximus represented successive outgroups to Octodontidae, while one-way comparisons with Cavia porcellus and Microcavia australis suggested that these caviids are almost as distant from octodontoids as is the chinchilloid Lagostomus. When the data were suitably corrected for percentage hybridization and saturation, division of the distances by the rate previously determined for most amniotes (0.48%/myr) suggested that the basal divergence among the caviomorph rodents examined occurred about 59 myrbp, and that Octodontidae originated 40 myrbp and diversified into extant lineages beginning 14 myr ago. Calibration against the date of the earliest known caviomorph (late Eocene or about 37.5 myrbp) gave a rate of 0.75%/myr, which would suggest later dates for subsequent caviomorph cladogenesis. It is notable that, based respectively on the slower or faster rates, the tetraploid Tympanoctomys barrerae must have diverged from its sister-taxon Octomys mimax 10 or 6.5 myr ago.     

The gallbladder of the Capivara Hydrochoerus hydrochoeris (Mammalia: Rodentia)

The authors studied morphological and histochemically the mucopolysaccharides and proteins in the gallbladder tubular glands and epithelial cells of the capivara Hydrochoerus hydrochoeris. Based on the results the authors concluded: 1. the gallbladder single columnar epithelium consists of secretory, migrating, and goblet cells; 2. in the lamina propria are single coiled tubular glands; 3. goblet and tubular gland cells show neutral and sulphated mucopolysaccharides and sialic acid; 4. columnar cells show neutral mucopolysaccharides and protein radicals; 5. migrating cells show only protein radicals.     

A ctenodactylid rodent (Mammalia: Rodentia) from the Middle Miocene of Chios Island (Greece)

Field work carried out in 1991 and 1993 at the Middle Miocene locality of Thymiana (Chios Island, Greece), produced much rodent material including a number of ctenodactylid dental specimens. They represent a single taxon whose upper and lower cheek tooth morphology clearly differs from Prosayimys flynni and all Sayimys species known so far, except for Sayimys intermedius. The ctenodactylid teeth from the Middle Miocene of Chios are identified as pertaining to the latter species, despite minor differences from the Pakistani and Saudi Arabian representatives of S. intermedius.     

Taxonomic identity of Chionomys nivalis spitzenbergerae (Mammalia: Rodentia)

The most genetically divergent populations of the European snow vole Chionomys nivalis occupy the extreme eastern range of the Black Sea and the Caspian Sea. It was recently suggested that subspecies C. n. spitzenbergerae from the Central Taurus Mountains (Turkey) represents a highly divergent lineage of C. nivalis from the Alada? Range which induced us to address its status by examining topotype specimens. Two females karyotyped displayed 54 mitotic chromosomes of 25 acrocentric autosomal pairs. One of the smallest autosomal pairs was heteromorphic in both specimens, consisting of a submetacentric and an acrocentric chromosomes (NFa = 53). Cytochrome b sequences however unambiguously clustered both individuals with reference sequences from C. nivalis from Turkey. We conclude that a deviant haplotype from the Alada? Range does not represent C. n. spitzenbergerae. Its taxonomic identity was not resolved in our study. Further attention should be devoted to snow voles from Central Anatolia and Western Iran, which are characterized by cranial peculiarities.     

Comparison of climate space and phylogeny of Marmota (Mammalia: Rodentia) indicates a connection between evolutionary history and climate preference

Palaeobiologists have investigated the evolutionary responses to extinct organisms to climate change, and have also used extinct organisms to reconstruct palaeoclimates. There is evidence of a disconnection between climate change and evolution that suggest that organism may not be accurate paleoclimate indicators. Here, marmots (Marmota sp.) are used as a case study to examine whether similarity of climate preferences is correlated with evolutionary relatedness of species. This study tests for a relationship between phylogenetic distance and 'climate distance' of species with a clade. There should be a significant congruence between maximus likelihood distance and standardized Euclidian distance between climates if daughter species tend to say in environments similar to parent species. Marmots make a good test case because there are many extant species, their phylogenetics are well established and individual survival is linked to climatic factors. A Mantel test indicates a significant correlation between climate and phylogenetic distance matrices, but this relationship explains only a small fraction of the variance (regression R(2) = 0.114). These results that (i) closely related species of marmots tend to stay in similar environments; (ii) marmots may be more susceptible than may mammals to global climate change; and (iii) because of the considerable noise in this system, the correlation cannot be used for detailed palaeoclimate reconstruction.     

中国四种鼯鼠的头骨形态学(英文)

针对长期以来有关鼯鼠分类地位的争议,该研究基于查看、测取60号鼯鼠成体头骨(每号头骨测取26个可量性状)共计1560个数据,运用多变量、单变量分析方法,对鼯鼠属(Petaurista)中的P.yunanensis,P.philippensis,P.hainana以及P.petaurista头骨可测量数据进行了统计学分析,以探讨上述4种鼯鼠的头骨形态差异以及P.yunanensis和P.hainana的分类地位。结果显示:(1)上述可测量头骨性状在该4种鼯鼠中不存在性二型现象;(2)上述4种鼯鼠在所测量的头骨性状上两两间均存在显著差异;(3)P.philippensis与P.hainana之间的头骨形态差异程度远大于P.yunanensis与P.philippensis之间的差异。该结果在宏观统计分析水平上为上述4种鼯鼠的种地位有效性提供了佐证,与前人基于分子水平(mtDNA)的种地位有效性研究结果相似。     

Molecular phylogeny of the speciose vole genus Microtus (Arvicolinae, Rodentia) inferred from mitochondrial DNA sequences

Voles of the genus Microtus represent one of the most speciose mammalian genera in the Holarctic. We established a molecular phylogeny for Microtus to resolve contentious issues of systematic relationships and evolutionary history in this genus. A total of 81 specimens representing ten Microtus species endemic to Europe as well as eight Eurasian, six Asian and one Holarctic species were sequenced for the entire cytochrome b gene (1140 bp). A further 25 sequences were retrieved from GenBank, providing data on an additional 23, mainly Nearctic, Microtus species. Phylogenetic analysis of these 48 species generated four well-supported monophyletic lineages. The genus Chionomys, snow voles, formed a distinct and well-supported lineage separate from the genus Microtus. The subgenus Microtus formed the strongest supported lineage with two sublineages displaying a close relationship between the arvalis species group (common voles) and the socialis species group (social voles). Monophyly of the Palearctic pitymyid voles, subgenus Terricola, was supported, and this subgenus was also subdivided into two monophyletic species groups. Together, these groupings clarify long-standing taxonomic uncertainties in Microtus. In addition, the Asian and the Nearctic lineages reported previously were identified although the latter group was not supported. However, relationships among the main Microtus branches were not resolved, suggesting a rapid and potentially simultaneous radiation of a widespread ancestor early in the history of the genus. This and subsequent radiations discernible in the cytochrome b phylogeny, show the considerable potential of Microtus for analysis of historical and ecological determinants of speciation in small mammals. It is evident that speciation is an ongoing process in the genus and that the molecular data provides a vital insight into current species limits as well as cladogenic events of the past.     

Molecular phylogeny of the genus Oryzomys (Rodentia: Sigmodontinae) based on cytochrome b DNA sequences

The genus Oryzomys comprises 40 species arranged in several species groups. To test the monophyly of three Oryzomys species groups ("capito," nitidus, and subflavus), we analyzed, by distance, parsimony, and maximum-likelihood (ML), 801 bp of the mitochondrial gene cytochrome b. Our results did not sustain the monophyly of Oryzomys nor of the nitidus and subflavus species groups. Within the "capito" species group, O. perenensis appeared as a valid species, as a sister branch of the clade formed by O. megacephalus and O. laticeps. Within the nitidius species group, only the association between O. nitidus and O. lamia was well supported.The subflavus species group split into two clades: one with O. subflavus karyomorphotypes and another grouping O. angouya with species of different genera in the parsimony, distance, and ML trees.     

The phylogeny of the Rhinocerotoidea (Mammalia, Perissodactyla)

A new phylogeny of the Superfamily Rhinocerotoidea is proposed, based upon an analysis of shared derived characters of the skull, teeth and skeleton. Hyrachyus is considered the primitive sister-taxon of the three rhinocerotoid families (Amynodontidae, Hyracodontidae, Rhinocerotidae), and the amynodonts appear to be the sister-group of hyracodonts and rhinocerotids. The relationships of primitive hyracodonts and rhinocerotids are clarified. Menoceras and Pleuroceras (new Subfamily Menoceratinae) are removed from the Diceratheriinae, since they appear to be more closely related to higher rhinoceroses than they are to Diceratherium. Of the three major monophyletic groups of higher rhinocerotids (aceratherines, teleoceratines and rhinocerotines), the last two groups are more closely related to each other than either is to aceratherines. Toxotherium and Schizotheroides are tentatively removed from the Rhinocerotoidea and placed in the Lophiodontidae.