天花粉蛋白小结构域N端同源片段的溶液构象,T18肽的圆二色性…

应用圆二色性,内源荧光和疏水荧光探针法进一步研究Ｔ１８肽的溶液构象及其相互转化,发现Ｔ１８肽在水溶液中为β折叠结构,且在高浓度（〉１ｍｇ／ｍｌ）时形成疏水聚合物,Ｌｙｓ１５和Ｉｌｅ３－Ｉｌｅ４是形成β折叠疏水簇的关键因素,并讨论了蛋白质链和溶剂环境对肽段二级结构的调制作用。     

天花粉蛋白T18肽片段的溶液构象及T14、TDK和T18肽构象比较

用１ＨＮＭＲ法测定Ｔ１８肽在ＤＭＳＯ（ＭＳ１８）和５０％六氟异丙醇（ＦＰ１８）中的溶液构象．ＭＳ１８含有Ｉｌｅ３～Ｇｌｎ７和Ａｌａ１２～Ｇｌｎ１６两段β－折叠链;而ＦＰ１８则转变为α－螺旋结构。综合分析Ｔ１４,Ｔ１８和ＴＤＫ三个模型肽的结构性质和稳定性,比较肽链序列和溶剂作用,提出肽链局部优势结构的概念,并据此讨论天花粉蛋白小结构域折叠起始过程．     

天花粉蛋白T18肽片段的溶液构象及T14,TDK和T18肽…

用＾１Ｈ ＮＭＲ法测定Ｔ１８肽在ＤＭＳＯ（ＭＳ１８）和５０％六氟异丙醇（ＦＰ１８）中的溶液构象。ＭＳ１８含有Ｉｌｅ３￣Ｇｌｕ７和Ａｌａ１２￣Ｇｌｎ１６两段β－折叠链;而ＦＰ１８则转变为α－螺旋结构。综合分析Ｔ１４,Ｔ１８和ＴＤＫ三个模型肽的结构性质和稳定性,比较肽链序列和溶剂作用,提出肽链局部优势结构的概念,并据此讨论天花粉蛋白小结构域折叠起始过程。     

NMR法研究天花粉蛋白T14肽片段的溶液构象

本文报道用１ＨＮＭＲ法测定Ｔ１４肽在ＤＭＳＯ（ＭＳ１４）,Ｈ２Ｏ（ＨＯ１４）,５０％甲醇（ＭＥ１４）和５０％六氟异丙醇（ＦＰ１４）中的溶液构象。通过ＮＯＥ效应,偶合常数,Ｈ／Ｄ交换速率表征和定位二级结构和疏水域,计算两面角φ和螺旋形成几率。结果表明序列Ｓｅｒ９～Ｔｌｅ１７在ＨＯ１４中较为有序,存在强流水作用。推测是类似螺旋样的亚稳结构;而在ＤＭＳＯ中序列ＳＡＬＳＫＱ存在形成α－螺旋结构的可能性,且六氟异丙醇（ＨＦＰ）促进α－螺旋的稳定性,并综合分析Ｈ２Ｏ,ＤＭＳＯ,ＭｅＯＨ和ＨＦＰ４种溶剂对Ｔ１４肽二级结构形成的作用。     

NMR法研天花粉蛋白T14肽片段的溶液构象

本文报道用ＨＮＭＲ法测定Ｔ１４肽在ＤＭＳＯ（ＭＳ１４）,Ｈ２Ｏ（ＨＯ１４）,５０％甲醇（ＭＥ１４）和５０％六氟异丙醇（ＦＰ１４）中的溶液构象。通过ＮＯＥ效应,偶合常数,Ｈ／Ｄ交换速率表征和定位二级结构和疏水域,计算两面角φ和螺旋形成几率。结果表明序列Ｓｅｒ９－Ｉｌｅ１７在ＨＯ１４中较为有序,存在强疏水作用,推测是类似螺旋样的亚稳结构;而在ＤＭＳＯ中序列ＳＡＬＳＫＱ存在形成α－螺旋结构的可能性,且六     

天花粉蛋白小结构域N端TCS182—200同源片段的构象研究

以天花粉蛋白小结构域Ｎ端ＴＣＳ１８２－２００同源片段序列为基础,设计Ｔ１４,Ｔ１８和ＴＤＫ３个模型肽。本文分析了模型肽的肽链柔性和侧链两亲性,预测二级结构形成势,并通过多肽固相合成和圆二色性研究模型肽的溶液二级结构,比较理论预测和实测结果。在水溶液中,Ｔ１８为β－折叠,ＴＤＫ含有一定量α－螺旋;而Ｔ１４基本上为无规卷曲,但在碱性条件下有类似螺肇的亚稳结构存在。     

NMR法研究天花粉蛋白TDK肽片段的溶液构象

用ＨＮＭＲ法测定ＴＤＫ肽在Ｈ２Ｏ（ＨＯＤＫ）,５０％六氟丙醇（ＦＰＤＫ）和２ｍｏｌ／ＬＧｕ．ＨＣｌ（ＧＵＤＫ）溶液构象。在ＨＯＤＫ和ＦＰＤＫ中,ＴＤＫ肽的两段序列Ａｓｐ０－Ｉｌｅ４,Ｓｅｒ９－Ｉｌｉ１７分别具有较稳定的α－螺旋含量;而ＧＵＤＫ的ＳＡＬＳ序列仍能检测到有序残存结构。并假设ＳＡＬＳ序列是肽链形成二级结构的原始核心。     

HMR法研究天花粉蛋白TDK肽片段的溶液构象

用１ＨＮＭＲ法测定ＴＤＫ肽在Ｈ２Ｏ（ＨＯＤＫ）,５０％六氟丙醇（ＦＰＤＫ）和２ｍｏｌ／ＬＧｕ·ＨＣｌ（ＧＵＤＫ）中的溶液构象。在ＨＯＤＫ和ＦＰＤＫ中,ＴＤＫ肽的两段序列Ａｓｐ０～Ｉｌｅ４,Ｓｅｒ９～Ｉｌｅ１７分别具有较稳定的α－螺旋含量;而ＧＵＤＫ的ＳＡＬＳ序列仍能检测到有序残存结构。并假设ＳＡＬＳ序列是肽链形成二级结构的原始核心。     

乙肝病毒表面抗原Pre-S1的N端片段溶液构象研究

利用二维核磁方法对乙肝病毒表面抗原Pre S1N端 2 0～ 47肽段进行溶液构象研究 ,并用距离几何方法搭建分子结构 ,最后用分子动力学模拟方法对结构进行优化 .分析结果发现该肽段存在 4个 β turn ,位置与免疫学定义的抗原抗体结合位点相符 .     

Biophysical studies of the interactions between 14-mer and 21-mer model amphipathic peptides and membranes: Insights on their modes of action

We have investigated the interactions between synthetic amphipathic peptides and zwitterionic model membranes. Peptides with 14 and 21 amino acids composed of leucines and phenylalanines modified by the addition of crown ethers have been synthesized. The 14-mer and 21-mer peptides both possess a helical amphipathic structure as revealed by circular dichroism. To shed light on their mechanism of membrane interaction, different complementary biophysical techniques have been used such as circular dichroism, fluorescence, membrane conductivity measurement and NMR spectroscopy. Results obtained by these different techniques show that the 14-mer peptide is a membrane perturbator that facilitate the leakage of species such as calcein and Na ions, while the 21-mer peptide acts as an ion channel. ³¹P solid-state NMR experiments on multilamellar vesicles reveal that the dynamics and/or orientation of the polar headgroups are greatly affected by the presence of the peptides. Similar results have also been obtained in mechanically oriented DLPC and DMPC bilayers where different acyl chain lengths seem to play a role in the interaction. On the other hand, ²H NMR experiments on multilamellar vesicles demonstrate that the acyl chain order is affected differently by the two peptides. Based on these studies, mechanisms of action are proposed for the 14-mer and 21-mer peptides with zwitterionic membranes.     

On the Occurrence of Three-Center Hydrogen Bonds in Cyclodextrins in Crystalline Form and in Aqueous Solution: Comparison of Neutron Diffraction and Molecular Dynamics Results

Abstract

Three-center (bifurcated) hydrogen bonds may play a role by serving as an intermediate state between different dynamically changing hydrogen bonding patterns. Hydrogen bonding configurations can be studied experimentally by neutron diffraction and theoretically by computer simulation techniques. Here, both methods are used to analyse the occurrence of three-center hydrogen bonds in crystals of cyclodextrins.

Almost all experimentally observed three-center hydrogen bonds in the crystal are reproduced in the molecular dynamics (MD) simulations, even as far as the detailed asymmetric geometry is concerned. On the basis of this result a MD simulation of cyclodextrin in aqueous solution is searched for the occurrence of three-center hydrogen bonds. Significant differences are found. In solution more different three-center hydrogen bonds per α-cyclodextrin molecule are observed than in the crystal but the population (existence as percent of the simulation period) of each three-center hydrogen bond is lower in solution than in crystal. These may indeed serve as intermediate states in the process of changing one hydrogen bonding pattern into another.     

Diimine Platinum(II) and Palladium(II) Complexes of Dithiocarbamate Derivative as Potential Antitumor Agents: Synthesis,Characterization, Cytotoxicity,and Detail DNA-Binding Studies

Abstract

The synthesis and chemical characterization of two structurally related platinum(II) and palladium(II) complexes, [M(2,2′-bipyridine)(morpholinedithiocarbamate)]NO₃ or [M(bpy) (mor-dtc)]NO₃, where M = Pt(II) or Pd(II), are described. Studies of anti-tumor activities of these complexes against human cell tumor lines (K₅₆₂) have been carried out. They show 50% cytotoxic concentration (Cc₅₀) values much lower than that of cisplatin. Both of these water soluble complexes have been shown to interact with calf thymus DNA (ct-DNA) using difference absorption-, fluorescence-, and circular dichroism-titration techniques. These studies showed that both complexes exhibit cooperative binding and presumably intercalate in DNA. These complexes unexpectedly denature DNA at very low concentrations (50–100 μM). Several binding and thermodynamic parameters are also described.     

Circular Dichroism Studies on Conformation of Cellobiohydrolase and Endoglucanase from Trichoderma pseudokiningii S-38: Effects of pH and Ligand Binding

Effects of pH and ligand binding upon the conformation of Cellobiohydrolase I (CBHI) and endoglucanase I (EGI) from Trichoderma pseudokiningii S-38 have been studied by circular dichroism measurements. In the high-pH range (6–9), increasing pH resulted in a similar conformational change occurring in free CBHI and EGI, while such treatment gave different changes of the two enzyme conformations in the presence of cellobiose. On the other hand, in the low-pH region, with both CBHI an EGI in the active form, decreasing pH resulted in a large conformational change of free EGI compared to that of free CBHI, whereas ligand binding resulted in a similar change of both CBHI and EGI, independent of pH change.     

N18-RE-105 cells: differentiation and activation of p53 in response to glutamate and adriamycin is blocked by SV40 large T antigen tsA58

Process extension was induced in cells of the N18-RE-105 neuroblastoma-retinal hybrid line by toxic agents, including glutamate and the p53-inducing anticancer agents adriamycin and etoposide. Both adriamycin and glutamate activated p53 as measured by a plasmid transfection assay. It was therefore hypothesized that SV40 large T antigen, which binds p53, would interfere with cellular differentiation. To test this hypothesis, the temperature-sensitive form of SV40 large T was transduced into N18-RE-105 cells by retroviral infection. SV40 large T-infected cells became de-differentiated, grew in tightly-packed colonies, lost expression of neurofilament, and lost the ability to differentiate in response to glutamate and adriamycin. The de-differentiating effect of SV40 large T antigen may be due to binding and inactivation of cellular proteins, such as p53, p107, p130, p300, and retinoblastoma protein, which are important in cellular growth and differentiation. It is suggested that p53 may play a role in cellular differentiation, perhaps under unusual circumstances involving stress or cytotoxicity. Received: 29 April 1997 / Accepted: 18 June 1997     

Interaction of membrane/lipid rafts with the cytoskeleton: Impact on signaling and function : Membrane/lipid rafts,mediators of cytoskeletal arrangement and cell signaling

The plasma membrane in eukaryotic cells contains microdomains that are enriched in certain glycosphingolipids, gangliosides, and sterols (such as cholesterol) to form membrane/lipid rafts (MLR). These regions exist as caveolae, morphologically observable flask-like invaginations, or as a less easily detectable planar form. MLR are scaffolds for many molecular entities, including signaling receptors and ion channels that communicate extracellular stimuli to the intracellular milieu. Much evidence indicates that this organization and/or the clustering of MLR into more active signaling platforms depends upon interactions with and dynamic rearrangement of the cytoskeleton. Several cytoskeletal components and binding partners, as well as enzymes that regulate the cytoskeleton, localize to MLR and help regulate lateral diffusion of membrane proteins and lipids in response to extracellular events (e.g., receptor activation, shear stress, electrical conductance, and nutrient demand). MLR regulate cellular polarity, adherence to the extracellular matrix, signaling events (including ones that affect growth and migration), and are sites of cellular entry of certain pathogens, toxins and nanoparticles. The dynamic interaction between MLR and the underlying cytoskeleton thus regulates many facets of the function of eukaryotic cells and their adaptation to changing environments. Here, we review general features of MLR and caveolae and their role in several aspects of cellular function, including polarity of endothelial and epithelial cells, cell migration, mechanotransduction, lymphocyte activation, neuronal growth and signaling, and a variety of disease settings. This article is part of a Special Issue entitled: Reciprocal influences between cell cytoskeleton and membrane channels, receptors and transporters. Guest Editor: Jean Claude Hervé.