Heritable somaclonal variation in wheat

Summary Efficient tissue culture and regeneration methods were established using immature wheat embryos as expiants. Genotype differences in culturability were evident, and from the ten accessions most amenable to culture, a total of 2,846 plants were regenerated. Extensive somaclonal variation for morphological and biochemical traits was observed among 142 regenerants of a Mexican breeding line, Yaqui 50E, and their progeny. Variant characters included height, awns, tiller number, grain colour, heading date, waxiness, glume colour, gliadin proteins and -amylase regulation. The variant characters were heritable through two seed generations and included traits under both simple and quantitative genetic control. Segregation data suggested that mutations both from dominance to recessiveness, and from recessiveness to dominance, had occurred. Most mutations in the primary regenerants were in the heterozygous state but some were true-breeding and presumed to be homozygous. Chromosome loss or addition did not account for the variation and none of the variant phenotypes was observed in over 400 plants from the parental seed source. The distinctive parental gliadin pattern was maintained in the somaclones thus excluding seed contamination or cross-pollination as a source of the variation.Abbreviations 2,4-D 2,4-dichlorophenoxy acetic acid - 2,4,5-T 2,4,5-trichlorophenoxy acetic acid - IAA indole acetic acid - BAP 6-benzyl amino purine - ABA abscisic acid - GA₃ gibberellic acid - DAP days after planting     

Insight into somaclonal variation

ABSTRACT

Somaclonal variation (S.V.) refers to mutational events occurring in tissue culture, although some permanent methylation processes should possibly also be included under this name. In this review, the possible causes as well as the mechanisms implicated in the induction of mutation in cultured cells are discussed. The needs for an easy assay to assess S.V. is pointed out.     

Studies on somaclonal variation in Phalaenopsis

The morphological and genetic variations in somaclones of Phalaenopsis True Lady “B79-19” derived from tissue culture were evaluated. In 1360 flowering somaclones, no apparent difference was found in the shape of the leaves, whereas flowers in some somaclones were deformed. We have demonstrated that 38 selected random primers can be used to generate amplified segments of genomic DNA and to differentiate polymorphisms of somaclonal variations in Phalaenopsis. The random amplified polymorphic DNA (RAPD) data indicated that normal and variant somaclones are not genetically identical. We also studied the banding patterns of aspartate aminotransferase (AAT) and phosphoglucomutase (PGM) in young leaves of variant and normal somaclones of Phalaenopsis. With respect to AAT, three distinct banding patterns were found in normal somaclones and only two-banded phenotypes were detected in variant somaclones. In a comparison of the banding patterns of PGM isozymes, three to four bands were detected in normal somaclones and two to three bands in variant ones. Received: 15 August 1997 / Revision received: 16 February 1998 / Accepted: 1 May 1998     

Heritable somaclonal variation in gliadin proteins of wheat plants derived from immature embryo callus culture

Summary Fertile r₀ plants of the winter wheat line ND7532 (Triticum aestivum L.) were regenerated from callus tissue after 60–190 days in culture. Seeds produced from these self-pollinated plants were planted in the field. Of the 5586 R₁ plants, 32 differed for one or more agronomic traits from plants not passed through tissue culture process. Gliadin electrophoregrams were prepared from bulk samples of R₂ seed from these 32 plants. Four of the 32 produced gliadin patterns different from controls, so 12 seeds of each of these four lines were examined individually. Three of the four mutant lines were fixed for the presence of a mutant protein of 50 relative mobility units (RMU) and the corresponding loss of a parental protein of 26 RMU. The remaining line segregated for the presence/absence of band 50 and the corresponding loss/retention of band 26. The mutant protein of 50 RMU was never seen in control plants. This indicated that either band 50 was coded for by a mutant gene allelic to the gene that coded for band 26 or that bands 26 and 50 were coded for by two different structural alleles under the control of a common regulatory locus. Each of the 12 seeds from the four mutant lines contained a prominent protein band at 30 (RMU), which was only observed as a faint band in one control seed. The types of variation in gliadin patterns observed in somaclones of ND7532 were similar to those reported for the line Yaqui 50E, except that, gliadin changes occurred less frequently in ND7532.This article is submitted in partial fulfillment of the requirements for the Ph.D. in Agronomy for the senior author, D. B. CooperContribution 85-239-J from the Kansas Agricultural Experiment Station. Research was supported by the Science and Education Administration of the U.S. Department of Agriculture under Grant No. 59-22201-1-1-639-0 from Competitive Research Grants Office to R.G.S.     

An assessment of somaclonal variation in linseed (Linum usitatissimum)

Somaclonal lines of linseed from the parent cultivar Norlin were produced from a callus-based in oitro regeneration system (the R₀ generation). In field trials conducted over two seasons, 47 R₁ (plants produced from the R₀ generation) and 20 R₂ somaclonal lines (plants produced from the R₁ generation) were compared to the parent cultivar Norlin for quantitative characters. Irrespective of the genotype, traits in R₁'s and R₂'s were assessed on the basis of regression analysis as showing heritabilities of between 28% and 64%. Generally, the somaclonal variation assessed during these early generations revealed some detrimental traits, e.g. lower seed yield than the parent (control) cultivar and reduced 1000 seed weights, but a few lines were identified which had early or late flowering dates, improved seed yield and increased 1000 seed weights. It is concluded that somaclonal variation could be of value as an adjunct to classical breeding.     

Somaclonal variation in some agronomic and quality characters in wheat

Summary A total of 256 selected lines derived from tissue culture of three hexaploid wheat cultivars were grown in a replicated hill plot experiment to examine somaclonal variation in agronomic characters. The lines were derived by single plant selection for various characters from a total of 100 regenerants, and were either SC₃ or SC₄ generation in the test. Significant variation was found in all the characters measured: height, grain number per spike, kernel weight, yield, total dry weight and harvest index. In most cases, variation could be identified which was both less than and greater than the parental controls. However, there was also an apparent effect of the parent cultivar on the total amount and direction of the variation. For two cultivars, lines could be traced back through the culture phase to individual explant embryos. Many of the original embryos contributed significant variation, and most characters showed significant variation arising from more than one embryo. In the following year, 32 lines selected from the hill plot experiment were grown in larger replicated plots and yield, harvest index and a number of grain and baking quality characters were measured. No lines selected for high yield or harvest index maintained significant improvements over their parental controls. However, significant variation was displayed for many of the quality characters examined. Significant increases in kernel weight, hardness and protein content, and a significant reduction in yellow pigmentation represented potentially useful improvements. Only unfavourable variation was seen in flour yield and in mixograph height, time and breakdown.     

Clonal micropropagation of six selected half-sibling families of Pinus pinea and somaclonal variation analysis

Organogenesis response of six selected half-sibling families of stone pine (Pinus pinea L.) has been evaluated, showing genotype-dependent behaviour. The caulogenic phase was characterized by high values of Survival and Organogenesis, while the rooting phase (the bottleneck of many coniferous species) showed great variability among families. Provenance influence was also studied, and the rhizogenesis protocol was optimized for the selected families. The highest values were obtained with family 36, with 100% of Organogenesis, a Bud Formation Capacity (BFC) Index of 6.54 and 38.44% of Rooted Shoots; on the other hand, family 61 presented the worst results, with 83.64% Organogenesis, a BFC Index of 3.01 and a 29.69% Rooting Rate. According to these results, both families will be used in further experiments looking for the underlying bases of the different organogenic behaviour between both families under the same culture conditions. In addition to this, and for the first time in this species, random amplified polymorphism DNA (RAPD) analysis has been carried out to determine whether somaclonal variation had occurred. The results suggested an absence of variation during the whole in vitro process, although more thorough studies would be required for a conclusive answer.     

Detection of somaclonal variation in cultured rice cells using digoxigenin-based random amplified polymorphic DNA

A procedure for the non-radioactive detection of random amplified polymorphic DNA (RAPD) was developed and designated as digoxigenin (DIG)-based RAPD. Using this procedure, we analyzed somaclonal variation in cultured cells of rice. Somaclonal variation was found to increase with culture age. More than 50 polymorphic fragments were identified with the four primers tested. Random sequencing of 10 clones generated one intron, one 5′-noncoding, and eight non-redundant expressed sequences. A database search for homology showed that the eight exon sequences displayed a significant similarity to sequences already stored in EMBL, GenBank and DDBJ. The sources of the known genes ranged from microorganism to human, including three rice genes. The results showed that somaclonal variation might have occurred in transfer RNA, ribosomal protein, and other genes during cell culture. Received: 14 November 1997 / Revision received: 21 August 1998 / Accepted: 31 August 1998     

Detection of somaclonal variation in garlic (Allium sativum L.) using RAPD and cytological analysis

Plants were regenerated by somatic embryogenesis from long-term callus cultures derived from five garlic (Allium sativum L.) cultivars. Thirty-five of these plants were subjected to RAPD analysis. The frequency of variation was found to be cultivar dependent: approximately 1% in the two clones Solent White and California Late and around 0.35% in another three clones, Chinese, Long Keeper and Madena. Certain band changes were found in regenerants of different cultivars, suggesting the existence of a mutation-sensitive part of the garlic genome. The karyotypes of another 75 regenerants derived from the same callus cultures of three parental garlic clones were examined. Of these plants, 9.3% were found to be tetraploids, 4% aneuploid and 2.6% showed a change in the position of the secondary constriction. No association could be shown between the rate of variation for molecular and cytological characters either by comparing cultivars or examining individual regenerants. Received: 30 July 1996 / Revision received: 28 October 1996 / Accepted: 12 November 1996     

Somatic embryogenesis and somaclonal variation in Norway spruce: morphogenetic, cytogenetic and molecular approaches

Four embryogenic clones of Norway spruce have been subcultivated and observed over several years to determine the evolution of production of mature embryos and to assess the quality of the embryos produced. A wide range of intraclonal quantitative and qualitative variability has been observed within this production. Certain morphologic deviations appeared at the immature stage and after maturation, such as immature embryos with a diffuse organization, complete or part albino mature embryos or acclimated somatic seedlings comparable to dwarf mutants. All of these phenotypic variations could be the result of a modification of the genome itself or of only the expression of the genome. Two approaches, chromosome counting and RAPD (random amplified polymorphic DNA), were chosen for their capacity to detect genotypic variations: respectively, genomic and chromosomic or genic mutations. The cytogenetic approach revealed, for the first time in this species, three cases of mutated acclimated somatic plants: one totally trisomic and two chimeras with trisomic buds and diploid roots. Other cases of 5-year-old trisomic, double trisomic, tetraploid or mixoploid embryogenic masses were also detected. The molecular approach (RAPD) revealed no somaclonal variation despite the large sample of DNA and primers used and the important interclonal variation observed. Received: 9 June 1996 / Accepted: 21 June 1996     

Hot spots of DNA instability revealed through the study of somaclonal variation in rye

RAPD analysis was performed to assess DNA variation among rye plants regenerated from immature embryos and inflorescences. From the studied plants, 40% showed at least one variation, and the number of mutations per plant was quite high, ranging from 1 up to 12. On some occasions (2.9% of the scored bands) the modified band was observed in only one plant or in several but originated from the same callus (variable band). In other cases (5.25%) the same band varied in several plants obtained from different calli. We call these hypervariable bands and they could vary between plants belonging to different cultivars and/or with different origins, inflorescences or embryos. Thus, they must originate through independent mutational events. We assume that these bands represent hypervariable regions of the rye genome and so detect hot spots of DNA instability. Some of these bands proved to be unique sequences, others were present in a low copy number while the remaining ones were moderately or highly repetitive. Received: 10 May 1999 / Accepted: 17 June 1999 Communicated by R. Hagemann     

Somaclonal variation in wheat: genetic and cytogenetic characterisation of alcohol dehydrogenase 1 mutants

Summary The progeny of 551 regenerants of the hexaploid wheat cultivar Millewa were analysed for somaclonal mutants at the threeAdh-1 loci in hexaploid wheat. Seventeen regenerants gave rise to progeny having altered ADH1 zymograms. Progeny with altered zymograms in 13 of these regenerants were aneuploid. The remaining 4 regenerants gave rise to euploid progeny with altered ADH1 zymograms. The genetics of three of these somaclonal mutants is described in detail. These regenerants were interpreted to possess a 4A isochromosome, a 3BS/4A translocation and a 7BS/4A translocation, respectively.This research was partly supported by the Rockefeller Foundation and a Reserve Bank of Australia Rural Credit Development Fund research grant     

Measurement of the extent of somaclonal variation in begonia plants regenerated under various conditions. Comparison of three assays

Begonia plants were regenerated from leaf explants treated with increasing concentrations of the chemical mutagen nitrosomethylurea (NMU). In these plants, we evaluated three methods to assess the extent of variation: a qualitative, phenotypic assay (the percentage of aberrant plants), a molecular assay (changes in RAPD patterns) and a quantitative, phenotypic assay (variation in a quantitative trait). The qualitative, phenotypic assay required a large number of plants per treatment (approx. 100) and careful, skilled judgement. It was sensitive to physiological variation. The RAPD assay was not sufficiently sensitive: even at the highest NMU concentration there were no changes in RAPD patterns. The quantitative, phenotypic assay gave the best results: it was simple, objective and sensitive, and required few plants per treatment (approx. 30). Plants were also regenerated from different types of intermediate callus, and their variation was assessed. The performance of the three assays was essentially the same as with plants obtained after mutagenesis with NMU. An intermediate nodular- or non-nodular-callus phase resulted in slightly or strongly increased variation, respectively. In contrast to NMU-induced variation, callus-related variation, as determined in the quantitative, phenotypic assay, appeared to be to a large extent transient since it decreased strongly after a second direct-regeneration step. An intermediate callus phase resulted in 2.5% juvenile plants. This aberration, which might be related with changes in the methylation status of DNA, was not observed in NMU-treated plants. Received: 30 January 2000 / Accepted: 14 April 2000     

Assessment of somaclonal variation in <Emphasis Type="Italic">Dieffenbachia</Emphasis> plants regenerated through indirect shoot organogenesis

The occurrence of somaclonal variation among regenerants derived through indirect shoot organogenesis from leaf explants of three Dieffenbachia cultivars Camouflage, Camille and Star Bright was evaluated. Three types of somaclonal variants (SV1, SV2, and SV3) were identified from regenerated plants of cv. Camouflage, one type from cv. Camille, but none from cv. Star Bright. The three variants had novel and distinct foliar variegation patterns compared to cv. Camouflage parental plants. Additionally, SV1 was taller with a larger canopy and longer leaves than parental plants and SV2. SV2 and SV3 did not produce basal shoots (single stem) but basal shoot numbers between SV1 and parental plants were similar ranging from three to four. The variant type identified from regenerated cv. Camille had lanceolate leaves compared to the oblong leaves of the parent. This variant type also grew taller and had a larger canopy than parental plants. The rates of somaclonal variation were up to 40.4% among regenerated cv. Camouflage plants and 2.6% for regenerated cv. Camille. The duration of callus culture had no effect on somaclonal variation rates of cv. Camouflage as the rates between plants regenerated from 8 months to 16 months of callus culture were similar. The phenotypes of the identified variants were stable as verified by their progenies after cutting propagation. This study demonstrated the potential for new cultivar development by selecting callus-derived somaclonal variants of Dieffenbachia.     

Molecular analysis of a somaclonal mutant of maize alcohol dehydrogenase

Summary Plants regenerated from tissue cultures of maize were screened for variants of ADH1 and ADH2. Root extracts of 645 primary regenerant plants were tested, and one stable mutant of Adh1 was detected. The mutant gene (Adh1-Usv) produces a functional enzyme with a slower electrophoretic mobility than that of the progenitor Adh1-S allele, and is stably transmitted to progeny. The mutant was not present among four other plants derived from the same immature embryo, and therefore arose as a consequence of the culture procedure. The gene of Adh1-Usv was cloned and sequenced. A single base change in exon 6 was the only alteration found in the gene sequence. This would translate in the polypeptide sequence to a valine residue substituting for a glutamic acid residue, resulting in the loss of a negative charge and the production of a protein with slower electrophoretic mobility.Abbreviations kb kilobase pairs - ADH alcohol dehydrogenase     

Epigenetic aspects of somaclonal variation in plants

Somaclonal variation is manifested as cytological abnormalities, frequent qualitative and quantitative phenotypic mutation, sequence change, and gene activation and silencing. Activation of quiescent transposable elements and retrotransposons indicate that epigenetic changes occur through the culture process. Epigenetic activation of DNA elements further suggests that epigenetic changes may also be involved in cytogenetic instability through modification of heterochromatin, and as a basis of phenotypic variation through the modulation of gene function. The observation that DNA methylation patterns are highly variable among regenerated plants and their progeny provides evidence that DNA modifications are less stable in culture than in seed-grown plants. Future research will determine the relative importance of epigenetic versus sequence or chromosome variation in conditioning somaclonal variation in plants.     

RAPD analysis of somaclonal variants derived from embryo callus cultures of peach

Peach [Prunus persica (L.) Batsch] regenerants from cv Sunhigh embryo no. 156, regenerants obtained from cv Redhaven embryo no. 30, and two peach cultivars Sunhigh and Redhaven, were screened for polymorphic RAPD (Random Amplified Polymorphic DNA) markers with up to 60 10-mer primers. Although 35 primers produced results with scoreable bands, only 10 of the primers revealed polymorphism for regenerants of embryo no. 156 and cv Sunhigh, and 1 revealed a low level of polymorphism for regenerants of embryo no. 30 and cv Redhaven. This study demonstrates the feasibility of using RAPD markers to identify somaclonal variants of peach and provides evidence for the existence of genetic differences among these variants.Abbreviations PCR Polymerase chain reaction - RAPD random amplified polymorphic DNA - RFLP Restriction fragment length polymorphism - CTAB cetyltrimethyl ammonium bromide - PVP polyvinyl pyrolidone - dNTP deoxy-ribonucleotide triphosphate Communicated by R. N. Trigiano     

Genetic aspects of wheat gliadin proteins

Inheritance of gliadin components unique to three different varieties of common wheat (Triticum aestivum L.) was studied in F₁ and F₂ seeds of intervarietal crosses using protein patterns obtained by polyacrylamide gel electrophoresis in aluminum lactate buffer (pH 3.2). The patterns of F₁ seeds of the crosses Cheyenne × Justin and INIA 66R × Justin evidenced all the bands present in the patterns of the parents; band intensities reflected gene dosage levels dependent on whether the contributing parent was maternal or paternal in accordance with the triploid nature of endosperm tissue. Most of the gliadin components examined segregated in accordance with control by a single dominant gene, but in two instances single bands in the one-dimensional electrophoretic patterns segregated in the F₂ as expected if controlled by two genes. A method of two-dimensional electrophoresis was developed that resolved these apparently single bands into two components each, which could segregate independently. Linkage analysis provided evidence of codominant alleles and closely linked genes coding for gliadin protein components in both coupling and repulsion situations. The gliadin protein components seem to be coded for by clusters of genes located on chromosomes of homoeologous groups 1 and 6 in hexaploid wheats.Reference to a company or product name does not imply approval by the U.S. Department of Agriculture to the exclusion of others which may also be suitable.     

部分美国小麦种质资源醇溶蛋白遗传多样性分析及其亚基对品质性状的影响

为了解67份美国材料的遗传多样性及其醇溶蛋白亚基对品质性状的影响,利用酸性聚丙烯酰胺凝胶电泳(APAGE)技术进行醇溶蛋白谱带分析,测定了面团流变学特性及理化品质。结果表明,在67份美国材料中共分离出1332条谱带,49种不同迁移率类型的谱带,大部分谱带具有多态性。单个材料谱带总数变异幅度为13~28。谱带数在α、β、γ、ω4个区的分布存在较大差异。没有发现电泳谱带完全相同的材料。GS值变异范围0.54~0.90,平均值为0.731。在GS=0.607水平上,聚类分析将这67份材料分为6类。49条不同迁移率的谱带中有17条谱带与36项品质性状的相关性达到显著或极显著差异。6条谱带(迁移率为49.6、56.2、56.7、62.2、79.4、86.8)与湿面筋含量、蛋白质含量和沉淀值呈正相关,而迁移率为60.5的谱带与之呈负相关。11条谱带(迁移率为26.5、42.0、49.6、52.5、56.2、56.7、62.2、64.1、72.0、79.4、86.8)与面团稳定时间、面团形成时间、延伸面积等面团流变学特征呈正相关,而迁移率为34.4、47.5、49.0、60.5、69.4、85.4的6条谱带则与之呈负相关。说明供试材料间存在着丰富的遗传多样性以及与优质品质相关的谱带,为进一步利用这67份种质资源和优质小麦品种的选育提供了理论依据。