Hypoxic Tumor Environments Exhibit Disrupted Collagen I Fibers and Low Macromolecular Transport

Hypoxic tumor microenvironments result in an aggressive phenotype and resistance to therapy that lead to tumor progression, recurrence, and metastasis. While poor vascularization and the resultant inadequate drug delivery are known to contribute to drug resistance, the effect of hypoxia on molecular transport through the interstitium, and the role of the extracellular matrix (ECM) in mediating this transport are unexplored. The dense mesh of fibers present in the ECM can especially influence the movement of macromolecules. Collagen 1 (Col1) fibers form a key component of the ECM in breast cancers. Here we characterized the influence of hypoxia on macromolecular transport in tumors, and the role of Col1 fibers in mediating this transport using an MDA-MB-231 breast cancer xenograft model engineered to express red fluorescent protein under hypoxia. Magnetic resonance imaging of macromolecular transport was combined with second harmonic generation microscopy of Col1 fibers. Hypoxic tumor regions displayed significantly decreased Col1 fiber density and volume, as well as significantly lower macromolecular draining and pooling rates, than normoxic regions. Regions adjacent to severely hypoxic areas revealed higher deposition of Col1 fibers and increased macromolecular transport. These data suggest that Col1 fibers may facilitate macromolecular transport in tumors, and their reduction in hypoxic regions may reduce this transport. Decreased macromolecular transport in hypoxic regions may also contribute to poor drug delivery and tumor recurrence in hypoxic regions. High Col1 fiber density observed around hypoxic regions may facilitate the escape of aggressive cancer cells from hypoxic regions.     

An inverted repeat triggers cytosine methylation of identical sequences in Arabidopsis

The Wassilewskija (WS) strain of Arabidopsis has four PAI genes at three sites: an inverted repeat at one locus plus singlet genes at two unlinked loci. These four genes are methylated over their regions of DNA identity. In contrast, the Columbia (Col) strain has three singlet PAI genes with no methylation. To test the hypothesis that the WS inverted repeat locus triggers methylation of unlinked identical sequences, we introduced this locus into the Col background by genetic crosses. The inverted repeat induced de novo methylation of all three unmethylated Col PAI genes, with methylation efficiency varying with the position of the target locus. These results, plus results with inverted repeat transgenes, show that methylation is communicated by a DNA/DNA pairing mechanism.     

Small RNA-directed epigenetic natural variation in Arabidopsis thaliana

Progress in epigenetics has revealed mechanisms that can heritably regulate gene function independent of genetic alterations. Nevertheless, little is known about the role of epigenetics in evolution. This is due in part to scant data on epigenetic variation among natural populations. In plants, small interfering RNA (siRNA) is involved in both the initiation and maintenance of gene silencing by directing DNA methylation and/or histone methylation. Here, we report that, in the model plant Arabidopsis thaliana, a cluster of approximately 24 nt siRNAs found at high levels in the ecotype Landsberg erecta (Ler) could direct DNA methylation and heterochromatinization at a hAT element adjacent to the promoter of FLOWERING LOCUS C (FLC), a major repressor of flowering, whereas the same hAT element in ecotype Columbia (Col) with almost identical DNA sequence, generates a set of low abundance siRNAs that do not direct these activities. We have called this hAT element MPF for Methylated region near Promoter of FLC, although de novo methylation triggered by an inverted repeat transgene at this region in Col does not alter its FLC expression. DNA methylation of the Ler allele MPF is dependent on genes in known silencing pathways, and such methylation is transmissible to Col by genetic crosses, although with varying degrees of penetrance. A genome-wide comparison of Ler and Col small RNAs identified at least 68 loci matched by a significant level of approximately 24 nt siRNAs present specifically in Ler but not Col, where nearly half of the loci are related to repeat or TE sequences. Methylation analysis revealed that 88% of the examined loci (37 out of 42) were specifically methylated in Ler but not Col, suggesting that small RNA can direct epigenetic differences between two closely related Arabidopsis ecotypes.     

Chromosomal differentiation through an Alpine hybrid zone in the grasshopper Chorthippus parallelus

The grasshopper Chorthippus parallelus is genetically differentiated over its range into at least five major geographical subdivisions. Two of these subdivisions, designated as subspecies, meet and form a hybrid zone in the Pyrenees. These subspecies differ for a wide range of morphological, behavioural and chromosomal characters, which vary clinally across the zone. A further geographical subdivision exists within Italy. Here we present the first evidence for chromosomal divergence between populations of the grasshopper north and south of the Alps. Across two Alpine cols (Col de Larche, between France and Italy; Passo de Resia, between Austria and Italy), these populations differ in both structural and functional components of the X-chromosome. Northern Alpine individuals possess an active nucleolar organizing region (NOR) at the distal end of the X-chromosome and an associated region of heterochromatin (C-band). Both these features are absent from individuals from the south of the Alps. However, all individuals examined carry distally located rDNA on the X-chromosome. Clinal transition was examined in the distal C-band in transects through the two cols. The cline centres are roughly coincident with the tops of the cols. Both clines were of similar widths (Col de Larche, 21.88 km; Passo de Resia, 24.05 km), and therefore much wider than those for an X-linked distal C-band in the Pyrenean hybrid zone. This suggests that there are different selective pressures on the cytogenetic characters in the Alps. The results are discussed in the context of the historical population dynamics of the species in relation to the climatic changes associated with the Pleistocene ice ages.     

Incompatibility Exhibited by Colicin Plasmids E1, E2, and E3 in Escherichia coli

Escherichia coli strains were made multiply colicinogenic for the colicin plasmids E1, E2, or E3 (Col E1, Col E2, or Col E3, respectively) by both a deoxyribonucleic acid transformation system and bacterial conjugation. The multiply colicinogenic bacteria constructed exhibited an immunity to the colicins produced by all the plasmids they carried and also produced colicins corresponding to all the plasmids they carried. An incompatibility was observed among the plasmids. In doubly colicinogenic cells where the presence of two plasmids was established, Col E2 was lost more frequently than Col E3. In triply colicinogenic cells, Col E1, Col E2, and Col E3 were lost, with Col E3 being lost least frequently. A significant reduction in the acquisition of a conjugationally transferred Col E1 plasmid by cells colicinogenic for Col E1 was demonstrated.     

Interactions between the predators thanasimus formicarius (Col.: Cleridae) and rhizophagus depressus (Col: Rhizophagidae), and the bark beetle tomicus Piniperda (Col.: Scolytidae)

The occurrences of Thanasimus formicarius (L.) (Cleridae), Rhizophagus depressus (F.) (Rhizophagidae), and Epuraea marseuli Reitter (Nitidulidae) in cut Scots pines, Pinus sylvestris L., attacked by Tomicus piniperda (L.) (Col.: Scolytidae) were recorded in the field, and interactions between the species were studied in caged pine bolts attacked by T. piniperda. T. formicarius eggs and R. depressus adults were abundant in the T. piniperda attacked trees, whereas only a few individuals of E. marseuli were found. T. formicarius and R. depressus, but not E. marseuli, reproduced in the caged bolts. T. piniperda offspring production per unit area of bark was reduced by 41% when reared with R. depressus, by 81% when reared with T. formicarius, and by 89% when all three species were reared together, compared with T. piniperda alone. The interaction between T. formicarius and R. depressus was mutually antagonistic. When both species were present in the same bolt the total number of larvae was reduced by 49% for R. depressus and the number of large larvae (length > 10 mm) was reduced by 35% for T. formicarius compared with their respective production values when each species was present alone with the bark beetle. There was a positive relationship between T. piniperda egg gallery density and the production of R. depressus larvae per m². Larvae of both R. depressus and T. formicarius developed into new adults during the first summer.

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Résumé Interactions entre les prédateursThanasimus formicarius (Col.: Cleridae) etRhizophagus depressus (Col.: Rhizophagidae) et le scolyteTomicus piniperda (Col.: Scolytidae) La présence deThanasimus formicarius (L.) (Cleridae),Rhizophagus depressus (F.) (Rhizophagidae), etEpuraea marseuli Reitter (Nitidulidae) a été étudiée sur le terrain dans des pins sylvestres (Pinus sylvestiris L) abattus, attaqués partomicus piniperda (L.) (Col.: Scolytidae) et les relations entre les espèces ont été étudiées sur des rondins de pin attaqués parT. piniperda et placés sous cage. Le nombre d’∄ufs deT. formicarius et d’adultes deR. depressus était important dans les arbres attaqués parT. piniperda, alors que seuls quelques individus deE. marseuli ont pu être trouvés.T. formicarius etR. depressus, mais pasE. marseuli, se sont reproduits dans les rondins sous cage. La production de descendants deT. piniperda par unité de surface d’écorce était réduite de 41% quand le scolyte était élevé avecR. depressus, de 81% en élevage avecT. formicarius et de 89% quand les trois espèces sont élevées ensemble, par comparaison avecT. piniperda seul. Les interactions entreT. formicarius etR. depressus étaient mutuellement antagonistes. Quand les deux espèces étaient présentes dans le même rondin, le nombre total de larves était réduit de 49% pourR. depressus et le nombre de grosses larves (longueur > 10 mm) était réduit de 35% pourT. formicarius comparé aux valeurs respectives quand chaque espèce était présente isolément avec le scolyte. Il y a une corrélation positive entre la densité de galeries avec des ∄ufs deT. piniperda et la production de larves deR. depressus par m². Les larves deR. depressus et deT. formicarius se sont transformés en adultes l’été suivant.

     

Rearrangement of a conditional allele regardless of inheritance of a Cre recombinase transgene

To generate conditional gene knockouts in osteoblasts, we previously developed transgenic mice in which Cre recombinase cDNA was cloned downstream of a 3.6 or 2.3 kb fragment of the rat Col1a1 promoter (Col3.6-Cre and Col2.3-Cre, respectively). Col-Cre mice were bred with mice in which exon 4 of the Igf1 gene is flanked by loxP sites. Mating units were arranged such that either the male or the female breeder transmitted the Col-Cre transgenes. Progeny were evaluated for Cre-mediated Igf1 gene rearrangement. We found that the loxP-flanked Igf1 locus was rearranged in the absence of inheritance of the Cre transgene. The incidence was 50 and 28% with Col2.3-Cre and Col3.6-Cre females, respectively, and 15 and 18% with Col2.3-Cre and Col3.6-Cre males, respectively.     

Expression and activity of osteoblast-targeted Cre recombinase transgenes in murine skeletal tissues

The Cre/loxP recombination system can be used to circumvent many of the limitations of generalized gene ablation in mice. Here we present the development and characterization of transgenic mice in which Cre recombinase has been targeted to cells of the osteoblast lineage with 2.3 kb (Col 2.3-Cre) and 3.6 kb (Col 3.6-Cre) fragments of the rat Col1a1 promoter. Cre mRNA was detected in calvaria and long bone of adult Col 2.3-Cre and Col 3.6-Cre mice, as well as in tendon and skin of Col 3.6-Cre mice. To obtain a historical marking of the temporal and spatial pattern of Cre-mediated gene rearrangement, Col-Cre mice were bred with ROSA26 (R26R) mice in which Cre-mediated excision of a floxed cassette results in LacZ expression. In Col 2.3-Cre;R26R and Col 3.6-Cre;R26R progeny, calvarial and long bone osteoblasts showed intense beta-gal staining at embryonic day 18 and postnatal day 5. The spatial pattern of beta-gal staining was more restricted in bone and in bone marrow stromal cultures established from Col 2.3-Cre;R26R mice. Similar differences in the spatial patterns of expression were seen in transgenic bone carrying Col1a1-GFP visual reporters. Our data suggest that Col 2.3-Cre and Col 3.6-Cre transgenic mice may be useful for conditional gene targeting in vivo or for obtaining osteoblast populations for in vitro culture in which a gene of interest has been inactivated.     

INFLUENCE DE LA TENEUR EN EAU ET DE LA DURETÉ DU TÉGUMENT DES GRAINES DE PHASEOLUS VULGARIS SUR LA FRÉQUENCE DE PÉNÉTRATION DES LARVES NÉONATES D'ACANTHOSCELIDES OBTECTUS

Les larves néonates d'Acanthoscelides obtectus Say (Col. Bruchidae) doivent percer le tégument des graines de Phaseolus vulguris pour effectuer leur développement dans les cotylédons. Ce tégument représente une véritable barrière tant mécanique que chimique. La dureté de celui-ci est un facteur important qui influence la fréquence de pénétration larvaire. Nous le montrons en contrôlant la teneur en eau du tégument un des facteurs déterminant de la dureté de celui-cl. l'âge des graines influence aussi la fréquence de percement indépendamment de la teneur en eau du tégument.     

Entomopathogenic fungi in predatory beetles (Col.: Carabidae andStaphylinidae) from agricultural fields

Prevalence of entomopathogenic fungi was studied in overwintering ground beetles (Col.: Carabidae) and rove beetles (Col.: Staphylinidae) collected from fields of lucerne, white cabbage and white cabbage undersown with white clover. In general infection levels in adult ground beetles and rove beetles were low (Carabidae: max. 7.6%,Staphylinidae: max. 7.0%). In comparison, prevalence of entomopathogenic fungi in carabid larvae was high (19–50%). At one study site an epizootic ofBeauveria bassiana was observed, infecting 67% of the staphylinidAnotylus rugosus and 37% of the staphylinidGyrohypnus angustatus. Beauveria bassiana was the predominant fungus isolated from ground beetles and rove beetles from all studied sites. Other fungal species included the hyphomycetesMetarhizium anisopliae, Paecilomyces farinosus andVerticillium lecanii as well asZoophthora radicans andZoophthora philonthi (Zygomycetes: Entomophthorales). Two individuals ofAnotylus rugosus were found to have a dual infection ofZoophthora philonthi andBeauveria bassiana.

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Résumé La présence de champignons entomopathogènes a été recherchée chez des carabes (Col.: Carabidae) et des staphylins (Col.: Staphylinidae) récoltés dans des champs de luzerne, de chou et d'une culture mélangée chou-trèfle blanc. Chez les adultes, le taux d'infection dans les deux groupes d'insectes est en général très faible (Carabidae: max. 7,6%, Staphylinidae: max. 7%). Chez les larves de carabes par contre, le taux d'infection par les champignons est élevé (19–50%). Sur l'un des sites de l'étude, une épizootie àBeauveria bassiana a été observée, l'infection portant sur 67% des individus récoltés appartenant à l'espèceAnotylus rugosus et 37% desGyrohypnus angustatus. B. bassiana est le champignon prédominant isolé à partir des coléoptères de tous les sites étudiés. D'autres espèces fongiques ont été relevées: ce sont les hyphomycètesMetarhizium anisopliae, Paecilomyces farinosus etVerticillium lecanii ainsi queZoophthora radicans etZoophthora philonthi. Deux individus d'A. rugosus ont été retrouvés infectés à la fois parErynia etB. bassiana.

     

Parabiosis model does not show presence of circulating osteoprogenitor cells

The goal of this study was to determine the presence of osteoprogenitor cells in the peripheral blood. Experiments were conducted with a parabiosis model in which osteoblast specific transgenic mice (Col2.3GFP or hOC‐GFP) were surgically joined with a transgenic mouse where herpes virus thymidine kinase gene is under the control of the collagen α1 promoter (Col2.3ΔTK). This method permits conditional ablation of osteoblasts by ganciclovir (GCV) treatment. In parabionts treated with GCV for 15 days or 1.5–2 months, GFP (hOC‐GFP or Col2.3GFP) expression was not detected in histological preparations or in marrow stromal cell cultures from the Col2.3ΔTK parabiont. Finally, Col2.3GFP/Col2.3ΔTK pairs were treated with GCV for 15 days and allowed to recover from GCV for 3 months. Again there was a failure to detect Col2.3GFP expressing cells in the Col2.3ΔTK parabiont. These observations, at least within the limits of this model system, allow the conclusion that osteoprogenitor cells do not readily circulate. genesis 48:171–182, 2010. © 2010 wiley‐Liss, Inc.     

Membrane damage in abortive infections of colicin Ib-containing Escherichia coli by bacteriophage T5.

Strains of Escherichia coli K-12 containing the colicin Ib (Col Ib) factor did not produce progeny phage when infected by T5 bacteriophage. The cells were killed but did not lyse. If sodium dodecyl sulfate (SDS) was added to T5-infected E. coli (Col Ib), lysis occurred prematurely, but no phage were produced. SDS had no effect on infected cells that did not contain the Col Ib factor or on uninfected cells with or without the Col Ib factor. Cells that contained a mutant Col Ib factor that allowed phage production were not prematurely lysed after infection in the presence of SDS. When the Col Ib-containing cells were infected, protein and RNA synthesis stopped at about 10 min postinfection, and the cells released abnormal amounts of 32P-containing material, ATP, and beta-galactosidase into the medium. They also became inhibited in their ability to accumulate thiomethyl-beta-D-galactopyranoside and to utilize glycerol. Two alternative hypotheses are presented to explain these results.     

Trehalose Metabolism in Germinating Spores of Streptomyces hygroscopicus

Catenated deoxyribonucleic acid molecules of colicin factor E1 (Col E1) were found with nearly equal frequency in minicells derived from Escherichia coli strain P678-54 recA(+) (Col E1) and P678-54 recA(-) (Col E1). The result suggests that the recombination function controlled by the recA gene does not influence the formation of catenated Col E1.     

A Comparative Study on In Vitro Osteogenic Priming Potential of Electron Spun Scaffold PLLA/HA/Col,PLLA/HA,and PLLA/Col for Tissue Engineering Application

A comparative study on the in vitro osteogenic potential of electrospun poly-L-lactide/hydroxyapatite/collagen (PLLA/HA/Col, PLLA/HA, and PLLA/Col) scaffolds was conducted. The morphology, chemical composition, and surface roughness of the fibrous scaffolds were examined. Furthermore, cell attachment, distribution, morphology, mineralization, extracellular matrix protein localization, and gene expression of human mesenchymal stromal cells (hMSCs) differentiated on the fibrous scaffolds PLLA/Col/HA, PLLA/Col, and PLLA/HA were also analyzed. The electrospun scaffolds with a diameter of 200–950 nm demonstrated well-formed interconnected fibrous network structure, which supported the growth of hMSCs. When compared with PLLA/H%A and PLLA/Col scaffolds, PLLA/Col/HA scaffolds presented a higher density of viable cells and significant upregulation of genes associated with osteogenic lineage, which were achieved without the use of specific medium or growth factors. These results were supported by the elevated levels of calcium, osteocalcin, and mineralization (P<0.05) observed at different time points (0, 7, 14, and 21 days). Furthermore, electron microscopic observations and fibronectin localization revealed that PLLA/Col/HA scaffolds exhibited superior osteoinductivity, when compared with PLLA/Col or PLLA/HA scaffolds. These findings indicated that the fibrous structure and synergistic action of Col and nano-HA with high-molecular-weight PLLA played a vital role in inducing osteogenic differentiation of hMSCs. The data obtained in this study demonstrated that the developed fibrous PLLA/Col/HA biocomposite scaffold may be supportive for stem cell based therapies for bone repair, when compared with the other two scaffolds.     

Taxonomical and biostratigraphical significance of the North African radiolitid rudist bivalve Praeradiolites biskraensis (Coquand, 1880)

Abstract: The revision of the radiolitid rudist bivalve Praeradiolites biskraensis (Coquand), including shell morphology and structure, taxonomical status, and palaeogeographical and stratigraphical distribution, was undertaken. We studied Coquand’s collection, other specimens from the type locality, Col de Sfa, and other Algerian fossil localities, as well as recently collected material from the Gafsa region in Tunisia. A neotype from Col de Sfa is proposed. The stratigraphical distribution of the species is bracketed in the Upper Cenomanian, using the distribution of co‐occurring ammonites in Tunisia and microfossils in Algeria. The palaeogeographical distribution is verified for Algeria and Tunisia based on all records in North Africa. Survey of the taxonomical status and problems of related radiolitid genera has resulted in revised diagnoses of Praeradiolites Douvillé, Eoradiolites Douvillé, Sphaerulites Lamarck and Radiolites Lamarck and revealed problems with Radiolites fleuriaui d’Orbigny, which is being the type species of Praeradiolites. Maghrebites gen. nov. is proposed for the North African radiolitid rudist Praeradiolites biskraensis (Coquand).