The feeding strategy of dab Limanda limanda in the southern North Sea: linking stomach contents to prey availability in the environment

The feeding strategy of dab Limanda limanda was investigated within a predefined research area in the southern North Sea for 2 years. The aims were: 1) to establish the relationship between prey availability and dab abundance, distribution, body condition and prey selection, and 2) to determine the underlying functional processes of prey choice in dab. Temporal and spatial trends of prey availability in relation to dab abundances, distribution, condition and prey selection were analysed. Temporal trends in dab condition, percentage of empty stomachs and numbers of ingested prey were apparent. In particular in the winter period 2000–2001 dab were in poor condition and prey items were only rarely found in stomachs. Similarly prey availability decreased in the environment while the abundance of dab increased. Thus, temporal changes in the nutritive state were partly thought to be attributed to density‐dependent effects. The stomach composition of dab during the two consecutive summers was mainly dominated by Pariambus typicus and Ophiura albida while in the winter period only O. albida made a significant contribution to the stomach content. Analysis of prey characteristics indicated that only prey densities in the environment significantly influenced prey choice in dab, while other characteristics such as the position of the prey in the habitat, its palatability or mobility did not have significant effects. The feeding strategy of dab thus was highly opportunistic, although trends were apparent that suggested that buried living fauna was less likely to be ingested, which was also observed in previous studies.     

Molecular identification of prey in the stomach contents of Harp Seals (Pagophilus groenlandicus) using species-specific oligonucleotides

All methods of diet analysis in marine mammals, including hard part analysis (HPA), have biases affecting the accuracy of prey-species identification and frequency in the estimated diet due to differential consumption, digestion and retention. Using PCR amplification of specific prey DNA with species-specific primers, we developed a DNA-based method that complements HPA and provides an alternative means to detect prey from stomach contents of Harp Seals (Pagophilus groenlandicus). The target size that could be reliably amplified was determined using a digestion time-series of Atlantic Cod (Gadus morhua) tissue in simulated seal stomachs. Various target lengths were trialed using general teleost primers; amplicons of approximately 800 bp or less were consistently obtained. Prey species-specific PCR primers for Atlantic Cod, Arctic Cod (Boreogadus saida) and Capelin (Mallotus villosus) were designed and tested with DNA from the stomach contents of 31 Harp Seals. Amplicons were obtained for all three species-specific primer sets. Amplification results compared with HPA revealed: (i) Atlantic Cod hard parts were found in five stomachs where no Atlantic Cod DNA amplified, suggesting that Atlantic Cod may be over-represented in the estimated diet, (ii) amplification of Arctic Cod DNA occurred for 17 stomachs, including all 12 stomachs with, and five stomachs without, Arctic Cod hard parts, and (iii) Capelin DNA amplified for four of five stomachs with Capelin hard parts and for one stomach without Capelin hard parts. We conclude that PCR amplification of specific prey DNA provides a viable means to complement Harp Seal diet analysis by HPA, but suggest that valuable information for quantitative diet analysis rests in a quantitative PCR approach.     

A multivariate approach to the feeding habits of small fishes in the Guadalquivir Estuary

In the analysis of the feeding habits of the 11 most abundant fish species in the Guadalquivir Estuary, collected monthly (February 1998 to January 1999) at two different sampling sites, a total of 46 prey taxa were identified. Classifications (based on Bray–Curtis similarities derived from occurrence, number and mass data) of the different fish categories (postlarvae and juvenile–adults of each species) revealed two main trophic guilds, whose preferential prey (SIMPER analysis) were mysids and copepods, respectively. The similarity matrices derived from occurrence, number and mass data were always significantly correlated (RELATE: r >0.636; P <0.01), indicating that a good agreement in feeding patterns emerged from these variables. The seasonal coincidence of maximal fish and key-prey species densities suggests that food availability may be a principal factor influencing the nursery function of the Guadalquivir Estuary.     

A new approach to graphical analysis of feeding strategy from stomach contents data—modification of the Costello (1990) method

A modification of the graphical Costello method is proposed for the analysis of stomach contents data. The new method allows prey importance, feeding strategy and the interand intra-individual components of niche width to be explored using graphical presentation. The analysis is based on a two-dimensional representation of prey-specific abundance and frequency of occurrence of the different prey types in the diet. The paper describes the new method and the parameters therein, and also present some examples of the utilization of the method. The method may be particularly well-suited for the examination of predictions made from optimal foraging, competition and niche theories.     

Food and feeding of Aurelia aurita in Tokyo Bay with an analysis of stomach contents and a measurement of digestion times

In situ seasonal variations in stomach contents of Aurelia aurita (L.) in Tokyo Bay, Japan, were analyzed. Copepods, such as Oithona davisae Ferrari & Orsi were the predominant food items of A. aurita from June to November. The mean digestion time measured in incubation experiments was 0.95 h. Daily rations calculated using stomach content data and digestion times were 2.2–21.8 mg C ind^–1 corresponding to 0.58–5.56% of body carbon. The ingestion rate increased significantly with an increase in medusa size, although no significant relationship was found between medusa size and carbon specific daily ration. The zooplankton community in Tokyo Bay is characterized by the significant dominance of O. davisae and it is assumed that the prosperity of A. aurita is caused by the high abundance of the O. davisae population. It is suggested that a food chain comprised of microflagellates, cyclopoid copepods O. davisae, and A. aurita is the most significant one in Tokyo Bay and only a small portion of production is transferred to fish.     

Diet and condition of three fish species (Characidae) of the Andean foothills in relation to deforestation

Synopsis I studied effects of deforestation on diet and condition of three characid species; Astyanax zonatus, Knodus gamma, and Prionobrama filigera in small streams in the Ecuadorian Amazon. The best condition of K. gamma was found at sites with low canopy cover, while the best condition of P. filigera was found at sites with high canopy cover. Deforestation changed population structure of A. zonatus by decreasing mean size of individuals, but this was not associated with lower fish condition. A. zonatus was omnivorous, and fed equally on invertebrate and plant food. A. zonatus increased feeding on aquatic food items (filamentous algae and fish scales) in the deforested sites (43%) compared to the forested sites (16%). K. gamma was an omnivorous species with preference for invertebrates. K. gamma was mainly feeding on terrestrial food sources in the forested sites, but switched to equal feeding between terrestrial and aquatic food sources in the deforested sites. P. filigera was an terrestrial insectivore feeder, and no differences in the overall food categories was found between stream groups. In contrast, there were no pronounced difference in the composition of invertebrate taxa in the stomachs of K. gamma between stream groups. However, less empty stomachs were observed among K. gamma in the deforested sites. The stomach contents of P. filigera showed great changes in composition of the predominating prey taxa between stream groups and less empty stomachs were observed among P. filigera in the forested sites. Food availability and utilisation seemed to be of main importance for the condition of these fish. Deforestation seems to favour species with high availability to utilise aquatic food items. In contrast, deforestation seems to have negative effects on species that are specialised on terrestrial invertebrates, and have low capacity to switch between aquatic and terrestrial food items.     

Short-term foraging patterns of individual cornetfish, Fistularia commersonii, based on stomach content analysis

Stomach contents of 75 specimens of the cornetfish Fistularia commersonii, collected in shallow water off Kuchinoerabu-jima Island, southern Japan were analyzed. Many fish contained multiple prey. The prey were mostly fish, grouped into two types, pelagic and reef fishes. The size of prey increased as the size of F. commersonii increased. All the small individuals (<50 cm SL) had fed on only small reef fish. However, most of the large individuals (>50 cm SL) had fed on either prey type. Both pelagic and reef fishes usually occurred simultaneously in shallow water, suggesting that most of the large cornetfish may selectively hunt either type of prey. Received: February 27, 2001 / Revised: September 11, 2001 / Accepted: October 10, 2001     

Purification,characterization, and molecular cloning of chitinases from the stomach of the threeline grunt Parapristipoma trilineatum

Two chitinase isozymes, PtChiA and PtChiB, were purified from the stomach of the threeline grunt, Parapristipoma trilineatum. The molecular masses of PtChiA and PtChiB were estimated to be 50 and 60 kDa by SDS-PAGE, respectively. Both chitinases were stable at pH 3.0–6.0 (acidic) and showed the optimum pH toward both short and long substrates in the acidic region (pH 2.5–5.0). PtChiA and PtChiB preferentially degraded the second and third glycosidic bonds from the non-reducing end of N-acetylchitooligosaccharides, respectively. PtChiA and PtChiB exhibited wide substrate specificities toward crystalline chitin. Moreover, 2 cDNAs encoding PtChiA and PtChiB, PtChi-1 and PtChi-2, respectively, were cloned. The deduced amino acid sequences of both chitinase cDNAs comprised N-terminal signal peptides, glycoside hydrolase 18 catalytic domains, linker regions, and C-terminal chitin-binding domains. Phylogenetic tree analysis of vertebrate chitinases revealed that fish stomach chitinases including PtChi-1 and PtChi-2 form unique chitinase groups, acidic fish chitinase-1 (AFCase-1) and acidic fish chitinase-2 (AFCase-2), which differ from the acidic mammalian chitinase (AMCase) group. The present results suggest that fish have a chitin-degrading enzymatic system in which 2 different chitinases, AFCase-1 and AFCase-2, with different degradation patterns are expressed in the stomach.     

A stereological method for estimating fish fecundity

This paper describes the application and evaluation of a stereological method for counting fish oocytes. The method has been applied to herring, Clupea harengus L., Dover sole, Solea solea L., and mackerel, Scomber scombrus L., and compared with existing volumetric and/or automated particle counter methods. The stereological method has been shown to given similar results and to have a number of distinct advantages over the other methods.     

The reliability of palatability estimates obtained from rumen contents analysis and a field-based index of diet selection

Understanding herbivore foraging behaviour is often limited by not knowing the palatability of food items. Electivity indices can overcome this challenge by relating the consumption of food items to their relative abundance in the environment. We compare eight widely used electivity indices to relate the level of consumption of 48 food items in the rumen contents of 402 red deer Cervus elaphus in New Zealand to the environmental availability of food items. Additionally, we derive a field-based index of palatability from observed browse damage recorded during vegetation surveys at our site. Electivity indices were positively correlated with each other and with the browse survey index, which was also positively correlated with electivity indices from other studies. Thus, the choice of electivity index is unimportant when making comparisons of relative palatability among food items. Our analyses suggest that quantitative measures of palatability may be reliably inferred from observed browse damage in the field, which is quicker and less destructive to estimate than electivity indices. As a result, we demonstrate a useful technique for predicting herbivore diet selection.     

DNA-based identification of larval cod in stomach contents of predatory fishes

Predator-prey interactions play an influential role in determining the demographics of a population or species. In the Northwest Atlantic, Atlantic cod, Gadus morhua, once the basis of a lucrative commercial fishery, have not recovered despite regulations imposed on the fishery to reduce harvest rates. One possible reason for the lack of recovery is that high predation pressure on juvenile and larval stages, particularly from species such as herring and mackerel, may regulate the abundance of cod. However, traditional methods used to identify larval cod and haddock often fail when applied to partially digested remains. Here, we described a DNA-based assay to identify the presence of digested cod remains from the stomachs of predatory fish species. After development, the assay was tested on two sets of field samples. Larval and juvenile cod were successfully detected in both tests.     

黄山陈村水库河源溪流鱼类群落的食性

基于2010年11月在黄山陈村水库河源溪流中所采集的鱼类标本,对其中9种优势鱼类的食性特征进行了研究。结果表明:宽鳍鱲(Zacco platypus)、光唇鱼(Acrossocheilus fasciatus)和麦穗鱼(Pseudorasbora parva)等9种鱼类都以有机碎屑、藻类和无脊椎动物为主要食物,属典型的杂食性或无脊椎动物食性鱼类;食物组成的相似性分析结果表明,不同物种间的食物组成差异显著但存在部分重叠(P<0.001)。不同物种间的食物多样性和食性宽度也存在显著性差异(P<0.05),其中底栖型鱼类具有相对较高的饵料来源,而鱼类的食物多样性可能与其小生境选择性有关。根据食物重叠指数,9种优势鱼类之间存在明显的食物重叠(D>0.3),尤其是宽鳍鱲、光唇鱼、麦穗鱼、高体鰟鮍(Rhodeus ocellatus)和稀有花鳅(Cobitis sinensis)间的食物重叠指数超过0.9。陈村水库河源溪流的鱼类群落所表现出的食物组成、食物多样性、食性宽度和种间食物重叠性等特征,可能与其生态系统所具有的营养外源性和物理栖息地周期动荡性等密切相关。     

Distribution and abundance of fish in deep-sea coral habitats

Experimental fishing with long-lines and gillnets was conducted on the continental shelf off southwestern Norway between 150 and 350 m depth. Abundance and distribution of redfish (Sebastes marinus L., 1758), ling (Molva molva L., 1758), and tusk (Brosme brosme Ascanius, 1772) were quantified in Lophelia pertusa (L., 1758) coral reefs and in non-coral habitats. The largest catches of redfish were made with long-line fleets set in coral reef habitats. Ling and tusk were also most numerous in coral habitats, although not statistically significant. Fish caught in coral habitats tended to be larger in size than in non-coral habitats. The diet of redfish, tusk and ling included the same prey groups in all habitats, but they differed at the species level. Lophelia-reefs may provide a profitable feeding place for tusk. For the planktivorous Sebastes, on the other hand, their affinity to the reefs seems primarily to be related to the physical structure offered by the reefs.     

Factors influencing nitrogen and phosphorus excretion rates of fish in a shallow lake

Summary 1. Fish excretion can be an important source of nutrients in aquatic ecosystems. Nitrogen (N) and phosphorus (P) excretion rates are influenced by many factors, including fish diet, fish growth rate and fish size. However, the relative influence of these and other factors on community‐level excretion rates of fish is unknown. 2. We used bioenergetics modeling to estimate excretion rates of eight fish species in a shallow, Minnesota (U.S.A.) lake over four months in both 2004 and 2005. Excretion rates of each species were summed for community‐level N and P excretion rates, as well as the N : P ratio of excretion. We then used a model‐selection approach to assess ability of independent variables to predict excretion rates, and to identify the most parsimonious model for predicting N : P excretion ratios and P and N excretion rates at the community scale. Predictive models were comprised of the independent variables water temperature and average fish density, fish size, fish growth rate, nutrient content of fish and nutrient content of fish diets at the community scale. 3. Fish density and nutrient content of fish diets (either N or P) were the most parsimonious models for predicting both N and P excretion rates, and explained 96% and 92% of the variance in N and P excretion, respectively. Moreover, fish density and nutrient models had 1400‐fold more support for predicting N and 21‐fold more support for predicting P excretion relative to models based on fish density only. Water temperature, fish size, fish growth rates and nutrient content of fish showed little influence on excretion rates, and none of our independent variables showed a strong relationship with N : P ratios of excretion. 4. Past work has focused on the importance of fish density as a driver of fish excretion rates on a volumetric basis. However, our results indicate that volumetric excretion rates at the community scale will also change substantially in response to changes in relative abundance of fish prey or shifts in relative dominance of planktivores, benthivores, or piscivores. Changes in community‐scale excretion rates will have subsequent influences on algal abundance, water clarity, and other ecosystem characteristics.     

Experimental evaluation of a minnow trap for small lotic fish

A minnow trap that operates in various flow regimes in streams and allows sampling of small fish from stream bed microhabitats was developed. In laboratory and field tests, the most efficient trap design for capturing and retaining various species of fish had one funnel oriented downstream, a plexiglass body, and commercial trout food as bait. These lightweight traps can be set in a wide range of current velocities and depths, and can be useful in investigations that examine the microhabitat use, diel activity patterns or population densities of small lotic fish. Guidelines for the trap's use and for quick verification of capture success in new situations are suggested.