Reproductive characteristics and population decline of four species of skate (Rajidae) off the eastern coast of Canada

Four of the most common species of skate (Rajidae) were studied off eastern Canada to determine if their reproductive characteristics were linked to their population trajectories. The fecundity of the winter skate Leucoraja ocellata , the little skate Leucoraja erinacea , the thorny skate Amblyraja radiata and the smooth skate Malacoraja senta averaged between 41 and 56 egg cases per year for each species. For all species but L. ocellata , males matured at larger sizes and at later ages than females. Theoretical rates of population increase for non-equilibrium populations of L. ocellata ( c . 0·07), M. senta ( c . 0·14) and L. erinacea and A. radiata ( c . 0·20) were low compared to most fishes, indicating that north-west Atlantic skates are intrinsically unproductive, yet are theoretically capable of supporting low-level fisheries. Nevertheless, the results of 36 years of research surveys indicate that the abundance of mature L. ocellata , A. radiata and M. senta all decreased by >90% since 1970, indicating that past fishing mortality (both directed and undirected) has outstripped the net productivity of the skate populations on the eastern Scotian Shelf. The relationship between maximum age ( t _max) and age of maturity ( t _mat) was a better predictor of population growth rate than was body size, with the species exhibiting the highest ratios of t _mat : t _max ( L. ocellata = 0·68, M. senta = 0·66) having the lowest predicted population growth rates. L. ocellata appears to have the lowest productivity and has experienced the greatest population decline, thus raising concerns over its future status.     

IMPLICATIONS OF NON-LINEAR DENSITY DEPENDENCE

Abstract: Ranges of the ratio of maximum net productivity level (MNPL) to carrying capacity (K) are explored in general models for pinnipeds and odontocetes. MNPL/K is used in management of marine mammals but no empirical evidence exists to limit the range of values expected. Density dependent changes in age-specific birth and death rates have been used to infer MNPL/K. Non-linearities in these rates do not translate directly to population growth curves. The simple models demonstrate: (1) density dependence is likely to involve more than a single parameter (such as birth rate), (2) MNPL/K can be greatly reduced from that inferred from one strongly non-linear parameter when changes in other parameters are linear, (3) ranges of MNPL/K depend on biological limits on ranges of fecundity and survival rates, and (4) the magnitude and sign of bias incurred by inferring MNPL/K from functional forms of single parameters cannot be determined. Given current empirical evidence the range of MNPL/K for marine mammals as a group is large. Although MNPL/K should not be inferred from single parameter non-linearities, distributions of MNPL/K values can be generated through models which account for single species ranges for birth and death rates and maximum population growth rate.     

Wolf population dynamics in the U.S. Northern Rocky Mountains are affected by recruitment and human-caused mortality

Reliable analyses can help wildlife managers make good decisions, which are particularly critical for controversial decisions such as wolf (Canis lupus) harvest. Creel and Rotella (2010) recently predicted substantial population declines in Montana wolf populations due to harvest, in contrast to predictions made by Montana Fish, Wildlife and Parks (MFWP). We replicated their analyses considering only those years in which field monitoring was consistent, and we considered the effect of annual variation in recruitment on wolf population growth. Rather than assuming constant rates, we used model selection methods to evaluate and incorporate models of factors driving recruitment and human-caused mortality rates in wolf populations in the Northern Rocky Mountains. Using data from 27 area-years of intensive wolf monitoring, we show that variation in both recruitment and human-caused mortality affect annual wolf population growth rates and that human-caused mortality rates have increased with the sizes of wolf populations. We document that recruitment rates have decreased over time, and we speculate that rates have decreased with increasing population sizes and/or that the ability of current field resources to document recruitment rates has recently become less successful as the number of wolves in the region has increased. Estimates of positive wolf population growth in Montana from our top models are consistent with field observations and estimates previously made by MFWP for 2008–2010, whereas the predictions for declining wolf populations of Creel and Rotella (2010) are not. Familiarity with limitations of raw data, obtained first-hand or through consultation with scientists who collected the data, helps generate more reliable inferences and conclusions in analyses of publicly available datasets. Additionally, development of efficient monitoring methods for wolves is a pressing need, so that analyses such as ours will be possible in future years when fewer resources will be available for monitoring. © 2011 The Wildlife Society.     

Genetic estimates of contemporary effective population size: what can they tell us about the importance of genetic stochasticity for wild population persistence?

Genetic stochasticity due to small population size contributes to population extinction, especially when population fragmentation disrupts gene flow. Estimates of effective population size ( N _e) can therefore be informative about population persistence, but there is a need for an assessment of their consistency and informative relevance. Here we review the body of empirical estimates of N _e for wild populations obtained with the temporal genetic method and published since Frankham's (1995 ) review. Theoretical considerations have identified important sources of bias for this analytical approach, and we use empirical data to investigate the extent of these biases. We find that particularly model selection and sampling require more attention in future studies.
We report a median unbiased N _e estimate of 260 (among 83 studies) and find that this median estimate tends to be smaller for populations of conservation concern, which may therefore be more sensitive to genetic stochasticity. Furthermore, we report a median N _e/ N ratio of 0.14, and find that this ratio may actually be higher for small populations, suggesting changes in biological interactions at low population abundances. We confirm the role of gene flow in countering genetic stochasticity by finding that N _e correlates strongest with neutral genetic metrics when populations can be considered isolated. This underlines the importance of gene flow for the estimation of N _e, and of population connectivity for conservation in general. Reductions in contemporary gene flow due to ongoing habitat fragmentation will likely increase the prevalence of genetic stochasticity, which should therefore remain a focal point in the conservation of biodiversity.     

Large variations in the ratio of effective breeding and census population sizes between two species of pond-breeding anurans

The viability of wild populations is frequently assessed by monitoring adult census sizes ( N _c). This approach is particularly useful for pond-breeding amphibians, because assemblages during the breeding season are relatively easy to detect and count. However, it is the genetic effective population size ( N _e) or surrogates such as effective breeding population size ( N _b) that are of primary importance for long-term viability. Although N _c estimates of one anuran amphibian ( Bufo bufo ) in Britain were much larger than those of another ( Rana temporaria ) at the same sites, the ratios of N _b to N _c were much smaller in B. bufo than in R. temporaria. These differences were sufficiently great as to reverse the effective size order at one site, such that N _b for R. temporaria was larger than that for B. bufo. Differences in adult sex ratios at breeding sites probably contributed to lower N _b values in B. bufo populations compared with those of R. temporaria . The relationship of N _b to N _c can therefore vary dramatically even between similar species, to the extent that just monitoring N _c can give misleading impressions of relative effective breeding sizes and thus of population viability. It will be increasingly important to estimate N _e or N _b in wildlife populations for assessment of conservation priorities.  © 2006 The Linnean Society of London, Biological Journal of the Linnean Society , 2006, 89 , 365–372.     

Sexual and geographical variation in life history parameters of the shorthorn sculpin

A total of 293 shorthorn sculpins Myoxocephalus scorpius from Tromsø, northern Norway, were sampled between November 1998 and April 1999 to determine sex, total length, age, growth, maturity and mortality. Females grew to larger sizes ( L _∞=26·9 v. 18·5 cm), matured later (2 v. 1 year of age) at larger size (maturation length=16 v. 14 cm L _T), and had lower instantaneous mortality rates (0·93 v. 1·20 year⁻¹) than males. The life history parameters of shorthorn sculpins in northern Norway were more similar to the parameters of short-lived central European populations than to the parameters of the long-lived population of Newfoundland. This study confirms that northern Norwegian shorthorn sculpins exhibit sexual dimorphism as in other shorthorn sculpin populations. The relationships between growth pattern, age at maturity and mortality rates observed in the Tromsø population and in other shorthorn sculpin populations, correspond well with the predictions from a published life history model.     

Subtle population structuring within a highly vagile marine invertebrate, the veined squid Loligo forbesi, demonstrated with microsatellite DNA markers

Microsatellite DNA markers were applied for the first time in a population genetic study of a cephalopod and compared with previous estimates of genetic differentiation obtained using allozyme and mitochondrial DNA (mtDNA) markers. Levels of genetic variation detected with microsatellites were much higher than found with previous markers (mean number of alleles per locus=10.6, mean expected heterozygosity ( H _E)=0.79; allozyme H _E=0.08; mtDNA restriction fragment length polymorphism (RFLP) H _E=0.16). In agreement with previous studies, microsatellites demonstrated genetic uniformity across the population occupying the European shelf seas of the North East Atlantic, and extreme genetic differentiation of the Azores population ( R _ST/ F _ST=0.252/0.245; allozyme F _ST=0.536; mtDNA F _ST=0.789). In contrast to other markers, microsatellites detected more subtle, and significant, levels of differentiation between the populations of the North East Atlantic offshore banks (Rockall and Faroes) and the shelf population ( R _ST=0.048 and 0.057). Breakdown of extensive gene flow among these populations is indicated, with hydrographic (water depth) and hydrodynamic (isolating current regimes) factors suggested as possible barriers to migration. The demonstration of genetic subdivision in an abundant, highly mobile marine invertebrate has implications for the interpretation of dispersal and population dynamics, and consequent management, of such a commercially exploited species. Relative levels of differentiation indicated by the three different marker systems, and the use of measures of differentiation (assuming different mutation models), are discussed.     

Metabolic rate, growth and aggressiveness in three Atlantic salmon Salmo salar populations

Standard metabolic rate ( R _S), specific growth rate ( G ) and aggressiveness were investigated in three Finnish populations of Atlantic salmon Salmo salar (Neva, Saimaa and Teno), which were reared in identical hatchery conditions. The populations differed in their geographical origin and native habitat. There was a significant difference between populations in R _S: the southernmost Neva population had higher values in R _S than the northernmost Teno population. No difference was found in G or aggressiveness between the populations. G was found to have a significant positive association with aggressiveness and R _S among the three populations, however, these results were not statistically significant after correction for multiple tests. There was no significant association between R _S and aggressiveness. Higher metabolic rate of the most southern population Neva is suggested to be an adaptation to the more abundant food sources of the southern stream.     

Microsatellite data reveals weak population substructuring in Copadichromis sp.'virginalis kajose', a demersal cichlid from Lake Malawi, Africa

Small but significant differences were found in allele frequencies among five populations (overall F _ST estimate (θ)=0·004, P=0·006; overall R _ST estimate (RHO)=0·019, P <0·00001) of the demersal cichlid Copadichromis sp.'virginalis kajose', collected from five locations in Lake Malawi. Pairwise F _ST estimates revealed significant differences between the most southerly population (Cape Maclear), and the three most northerly populations (Mbamba Bay, Metangula and Chilola). Pairwise R _ST estimates also revealed significant differences between some populations, but no geographical pattern was discernible. There was no evidence of isolation by distance using either the shortest straight-line distance between samples, or the distance around the shoreline following a 50 m depth contour. F _ST estimates were considerably lower than found in previous studies on the mbuna (rock-dwelling species), but higher than those found in a study of three pelagic cichlid species from Lake Malawi. Substructuring in C. sp.'virginalis kajose' appears to be on a similar scale to the Atlantic cod.     

DYNAMIC RESPONSE ANALYSIS. III. A CONSISTENCY FILTER AND APPLICATION TO FOUR NORTHERN ELEPHANT SEAL COLONIES

Dynamic response analysis, a technique for determining stock size relative to the maximum net productivity level (MNPL), was applied to northern elephant seal populations from the South Farallon Islands, Año Nuevo Island, San Nicolas Island and San Miguel Island. Pup counts were used as indices of population size. The application of dynamic response analysis presented here involved some methodological innovations. We present a moving interval method which involves calculating separate dynamic response analyses for intervals of various lengths ranging from four counts to the total number available for the colony. The sign of the second order polynomial regression coefficient computed from a particular interval was used to indicate the colony's apparent status (relative to its MNPL, += above MNPL, - = below MNPL) on that interval. Consistency in the sign of the second order coefficient, as the interval was moved along the trajectory, was used to determine the minimum reliable interval size. Each colony exhibited growth similar to that of a population below its MNPL. These results are consistent with recent natural history observations at San Nicolas, San Miguel and the South Farallon islands. Natural history observations at Año Nuevo Island suggest that the colony there is now at equilibrium. Thus, if our results from dynamic response analysis of the Ano Nuevo colony are correct, it appears that the MNPL may be close to the carrying capacity for these animals.     

Estimation of Successful Breeding Pairs for Wolves in the Northern Rocky Mountains,USA

Abstract: Under the Endangered Species Act, documenting recovery and federally mandated population levels of wolves (Canis lupus) in the Northern Rocky Mountains (NRM) requires monitoring wolf packs that successfully recruit young. United States Fish and Wildlife Service regulations define successful breeding pairs as packs estimated to contain an adult male and female, accompanied by ≥2 pups on 31 December of a given year. Monitoring successful breeding pairs will become more difficult following proposed delisting of NRM wolves; alternatives to historically intensive methods, appropriate to the different ecological and regulatory context following delisting, are required. Because pack size is easier to monitor than pack composition, we estimated probability a pack would contain a successful breeding pair based on its size for wolf populations inhabiting 6 areas in the NRM. We also evaluated the extent to which differences in demography of wolves and levels of human-caused mortality among the areas influenced the probability of packs of different sizes would contain successful breeding pairs. Probability curves differed among analysis areas, depending primarily on levels of human-caused mortality, secondarily on annual population growth rate, and little on annual population density. Probabilities that packs contained successful breeding pairs were more uniformly distributed across pack sizes in areas with low levels of human mortality and stable populations. Large packs in areas with high levels of human-caused mortality and high annual growth rates had relatively high probabilities of containing breeding pairs whereas those for small packs were relatively low. Our approach can be used by managers to estimate number of successful breeding pairs in a population where number of packs and their sizes are known. Following delisting of NRM wolves, human-caused mortality is likely to increase, resulting in more small packs with low probabilities of containing breeding pairs. Differing contributions of packs to wolf population growth based on their size suggests monitoring successful breeding pairs will provide more accurate insights into population dynamics of wolves than will monitoring number of packs or individuals only.     

Mortality limits used in wind energy impact assessment underestimate impacts of wind farms on bird populations

1. The consequences of bird mortality caused by collisions with wind turbines are increasingly receiving attention. So‐called acceptable mortality limits of populations, that is, those that assume that 1%–5% of additional mortality and the potential biological removal (PBR), provide seemingly clear‐cut methods for establishing the reduction in population viability.
2. We examine how the application of these commonly used mortality limits could affect populations of the Common Starling, Black‐tailed Godwit , Marsh Harrier, Eurasian Spoonbill, White Stork, Common Tern, and White‐tailed Eagle using stochastic density‐independent and density‐dependent Leslie matrix models.
3. Results show that population viability can be very sensitive to proportionally small increases in mortality. Rather than having a negligible effect, we found that a 1% additional mortality in postfledging cohorts of our studied populations resulted in a 2%–24% decrease in the population level after 10 years. Allowing a 5% mortality increase to existing mortality resulted in a 9%–77% reduction in the populations after 10 years.
4. When the PBR method is used in the density‐dependent simulations, the proportional change in the resulting growth rate and carrying capacity was species‐independent and largely determined by the recovery factor (F_r). When F_r = 1, a value typically used for robust populations, additional mortality resulted in a 50%–55% reduction in the equilibrium density and the resulting growth rate. When F_r = 0.1, used for threatened populations, the reduction in the equilibrium density and growth rate was about 5%.
5. Synthesis and applications. Our results show that by allowing a mortality increase from wind farm collisions according to both criteria, the population impacts of these collisions can still be severe. We propose a simple new method as an alternative that was able to estimate mortality impacts of age‐structured stochastic density‐dependent matrix models.

     

Vector-borne diseases and the basic reproduction number: a case study of African horse sickness

Abstract. The basic reproduction number, R ₀, can be used to determine factors important in the ability of a disease to invade or persist. We show how this number can be derived or estimated for vector-borne diseases with different complicating factors. African horse sickness is a viral disease transmitted mainly by the midge Culicoides imicola. We use this as an example of such a vector-transmitted disease where latent periods, seasonality in vector populations, and multiple host types may be important. The effect of vector population dynamics which are dependent on either host or vector density are also addressed. If density-dependent constraints on vector population density are less severe, R_o is more sensitive to vector mortality and the virus development rate. Host-dependent vector dynamics change the relationship between R₀ and host population size. Seasonality can either increase or decrease the estimate of R₀ , depending on the lag between the peak of the midge population and the infective host population. The relative abundance of two host types is a factor in the ability of a disease to invade, but the strength of this factor depends on the differences between the hosts in recovery from infection, mortality and transmission. Removal of a reservoir host may increase R_Q.     

Extra-pair fertilization and effective population size in the song sparrow Melospiza melodia

The concept of effective population size (N_e) is used widely by conservation and evolutionary biologists as an indicator of the genetic state of populations, but its precision and relation to the census population size is often uncertain. Extra-pair fertilizations have the potential to bias estimates of N_e when they affect the number of breeders or their estimated reproductive success tallied from social pedigrees. We tested if the occurrence of extra-pair fertilizations influenced estimates of N_e in a resident population of song sparrows Melospiza melodia using four years of detailed behavioural and genetic data. Estimates of N_e based on social and genetic data were nearly identical and averaged c. 65% of the census population size over four years, despite that 28% of 471 independent young were sired outside of social pairs. Variance in male reproductive success also did not differ between estimates based on social and genetic data, indicating that extra-pair mating had little effect on the distribution of reproductive success in our study population. Our results show that the genetic assignment will not always be necessary to estimate N_e precisely.     

Cultivation of Thermoanaerobium brockii in continuous culture with complete cell recycling

The growth behaviour of the thermophilic anaerobic bacterium Thermoanaerobium brockii for the production of its intracellular secondary alcohol dehydrogenase (sADH) has been studied in batch cultures as well as in continuous cultivation with complete cell recycling. In batch culture the maximum specific growth rate, μ_MAX, was 0·5 h⁻¹, resulting in a cell density of 1·2 g l⁻¹ and an sADH activity of 1·3 units ml⁻¹. Higher glucose concentrations resulted in a decrease in ep cf7 max rs, enzyme productivity as well as biomass yield although an increase in total biomass was achieved. To improve cell density and productivity, continuous culture with complete cell recycling was used, resulting in an increase in cell density by 5 times and in productivity of the sADH by 3 times in comparison to those obtained in batch culture.     

Roadway mortality of barn owls in Idaho,USA

We examined the temporal, spatial, and demographic factors that influenced roadway mortality of barn owls (Tyto alba) along a 248-km stretch of Interstate 84 in southern Idaho using systematic road surveys. Counts of dead animals from surveys can be underestimated because of sampling biases; therefore, we also conducted experiments to assess the effects of search and removal bias on the estimates of roadway mortality of owls. We conducted surveys every 2 weeks over a 2-year period and detected 812 dead barn owls (unadjusted mortality rate of 1.64 owls/km/yr). After adjusting this estimate for search and removal bias, we documented mortality rates of up to 5.99 owls/km/year. Owl mortality was not random in relation to sex, age class, or location along the highway. Females and juveniles, which represent individuals more likely to disperse long distances, were killed more frequently than males and adults. During the nonbreeding season, owls were killed more often near agricultural lands than in shrub-steppe, but this pattern was not apparent during the breeding season. Owls were also killed more often on portions of the roadway closer to the Snake River canyon, perhaps because of the availability of nest and roost sites. Mortality rates differed markedly between the 2 years of study, which could have been related to variability in weather and its subsequent effect on owl productivity. Our data suggest that barn owls in this region may not persist under this level of mortality without significant immigration or management. Thus, roadway management to reduce or prevent owl use of roadways, reduce rodent populations near major roads, alert motorists to the presence of owls, or otherwise reduce the chances that vehicles and owls collide would improve barn owl survival and population persistence. © 2012 The Wildlife Society.     

Relationship between standard metabolic rate and parasite-induced cataract of juveniles in three Atlantic salmon stocks

The connection between standard metabolic rate ( R _S) and parasite-induced cataract was investigated in this study. Oxygen consumption rate and cataract of 1 year-old fish in three Atlantic salmon Salmo salar stocks: Lake Saimaa, River Neva and River Teno reared at the same fish farm were examined. The measurements were carried out in winter, in spring before transporting the fish to the outside raceways and in autumn after the raceway period. Fish were exposed to natural Diplostomum spp. infection especially during the raceway period. The prevalence of cataract-bearing fish and cataract intensities ( I _C) differed between the populations. Most cataract-bearing individuals were found in the Saimaa stock and, in addition, the Saimaa stock had higher I _C than Neva and Teno stocks. These findings support the theory of a parasite being most infective to local population. The R _S, however, differed also between the stocks, the Teno stock had higher values compared to the Neva stock in winter. Furthermore, R _S and cataract intensity had a statistically significant positive correlation in autumn. Therefore, the results also reveal a possibility that parasite infection affects R _S of the fish.     

Coppicing shifts CO2 stimulation of poplar productivity to above-ground pools: a synthesis of leaf to stand level results from the POP/EUROFACE experiment

A poplar short rotation coppice (SRC) grown for the production of bioenergy can combine carbon (C) storage with fossil fuel substitution. Here, we summarize the responses of a poplar ( Populus ) plantation to 6 yr of free air CO₂ enrichment (POP/EUROFACE consisting of two rotation cycles). We show that a poplar plantation growing in nonlimiting light, nutrient and water conditions will significantly increase its productivity in elevated CO₂ concentrations ([CO₂]). Increased biomass yield resulted from an early growth enhancement and photosynthesis did not acclimate to elevated [CO₂]. Sufficient nutrient availability, increased nitrogen use efficiency (NUE) and the large sink capacity of poplars contributed to the sustained increase in C uptake over 6 yr. Additional C taken up in high [CO₂] was mainly invested into woody biomass pools. Coppicing increased yield by 66% and partly shifted the extra C uptake in elevated [CO₂] to above-ground pools, as fine root biomass declined and its [CO₂] stimulation disappeared. Mineral soil C increased equally in ambient and elevated [CO₂] during the 6 yr experiment. However, elevated [CO₂] increased the stabilization of C in the mineral soil. Increased productivity of a poplar SRC in elevated [CO₂] may allow shorter rotation cycles, enhancing the viability of SRC for biofuel production.     

Intrinsic and extrinsic determinants of mountain pine beetle population growth

1 Mountain pine beetle Dendroctonus ponderosae populations have large, economically significant outbreaks. Density dependence and environmental variability are expected to have important effects on their dynamics. We analysed time series data from an outbreak in the 1930s to determine the relative importance of population density and environmental variability on local population growth rates.
2 Resource depletion occurred rapidly at the scale of 0.4 ha and population growth rates were strongly density dependent. Annual environmental changes did not have detectable effects on population growth rates, leading to the conclusion that intrinsic processes influenced local population density more than extrinsic factors during this outbreak.
3 Our calculated value of r _max (1.16) does not suggest intrinsically cyclic population dynamics. Our estimate of r _max and density dependence will be useful in developing applied models of mountain pine beetle outbreaks, and the subsequent evaluation of management strategies.     

Effect of root perturbation and excision on nitrate influx and efflux in barley (Hordeum vulgare) seedlings

The effects of perturbation and excision on net NO^-₃, uptake, influx and efflux in roots of 8-day-old barley ( Hordeum vulgare L.) seedlings induced with NO^-₃ or NO^-₂ were determined. Perturbation was simulated by mechanically striking the intact roots with a glass rod. Perturbation or excision of roots and subsequent division into small segments had little effect on NO^-₃ influx, but briefly inhibited net uptake which recovered within a few min. While in perturbed roots net uptake rates recovered to the same level as in control roots, full recovery did not occur in excised roots. Inhibition of net uptake was due to stimulation of NO^-₃ efflux. The recovery time and level of inhibition of net NO^-₃ uptake and/or stimulation of efflux were a function of extent of perturbation, or the number of segments following excision, and root NO^-₃ concentration. NO^-₃ efflux was further stimulated when roots were perturbed after cytoplasmic NO^-₃ had been depleted, indicating that both the plasmalemma and tonoplast may be affected. In excised roots both NO^-₃ influx and efflux decreased with age due to depletion of energy sources. The results indicate that root perturbation and excision had no effect on NO^-₃ influx but inhibited net uptake by stimulating efflux.