Assessing the net effect of anthropogenic disturbance on aquatic communities in wetlands: community structure relative to distance from canals

Anthropogenic alterations of natural hydrology are common in wetlands and often increase water permanence, converting ephemeral habitats into permanent ones. Since aquatic organisms segregate strongly along hydroperiod gradients, added water permanence caused by canals can dramatically change the structure of aquatic communities. We examined the impact of canals on the abundance and structure of wetland communities in South Florida, USA. We sampled fishes and macroinvertebrates from marsh transects originating at canals in the central and southern Everglades. Density of all aquatic organisms sampled increased in the immediate proximity of canals, but was accompanied by few compositional changes based on analysis of relative abundance. Large fish ( >8 cm), small fish ( <8 cm) and macroinvertebrates ( >5 mm) increased in density within 5 m of canals. This pattern was most pronounced in the dry season, suggesting that canals may serve as dry-down refugia. Increases in aquatic animal density closely matched gradients of phosphorus enrichment that decreased with distance from canals. Thus, the most apparent impact of canals on adjacent marsh communities was as conduits for nutrients that stimulated local productivity; any impact of their role as sources of increased sources of predators was not apparent. The effect of predation close to canals was overcompensated by increased secondary productivity and/or immigration toward areas adjacent to canals in the dry season. Alternatively, the consumptive effect of predatory fishes using canals as dry-season refuges is very small or spread over the expanse of marshes with open access to canals. Electronic supplementary material Electronic supplementary material is available for this article at and accessible for authorised users.     

Does a long‐term shift in Wood Stork diet foreshadow adaptability to human‐induced rapid environmental change?

To preserve biodiversity, identifying at‐risk populations and developing conservation plans to mitigate the effects of human‐induced rapid environmental change (HIREC) are essential. Changes in diet, especially for food‐limited species, can aid in detecting populations being impacted by HIREC, and characterizing the quality, abundance, and temporal and spatial consistency of newly consumed food items may provide insight concerning the likelihood of a species persisting in a changing environment. We used Wood Storks (Mycteria americana) nesting in the Florida Everglades as a model system to study the possible effects of HIREC on a food‐limited population. We compared the diets of Wood Storks in 2013 and 2014 with those reported during the 1970s before major anthropogenic activities affected the Everglades system and prey availability. Wood Storks in our study consumed more large‐bodied sunfish species (Lepomis spp.), fewer native marsh fishes, and more non‐native fish species than during the 1970s. Large sunfish and non‐native fish are relatively rare in the drying pools of Everglades marshes where storks traditionally forage, suggesting that Wood Storks may be using novel foraging habitats such as created wetlands (i.e., canals and stormwater ponds). Although created wetlands have long hydroperiods conducive to maintaining large‐bodied fishes and could provide alternative foraging habitat when prey availability is reduced in natural marshes, additional studies are needed to determine the extent to which these wetlands are used by Wood Storks and, importantly, the quality of prey items potentially available to foraging Wood Storks in created wetlands.     

Separating the effects of intra- and interspecific age-structured interactions in an experimental fish assemblage

We documented patterns of age-structured biotic interactions in four mesocosm experiments with an assemblage of three species of co-occurring fishes from the Florida Everglades, the eastern mosquitofish (Gambusia holbrooki), sailfin molly (Poecilia latipinna), and bluefin killifish (Lucania goodei). These species were chosen based on their high abundance and overlapping diets. Juvenile mosquitofish and sailfin mollies, at a range of densities matching field estimates, were maintained in the presence of adult mosquitofish, sailfin mollies, and bluefin killifish to test for effects of competition and predation on juvenile survival and growth. The mesocosms held 1,200 l of water and all conditions were set to simulate those in Shark River Slough, Everglades National Park (ENP), USA. We placed floating mats of periphyton and bladderwort in each tank in standard volumes that matched field values to provide cover and to introduce invertebrate prey. Of 15 possible intra- and interspecific age-structured interactions, we found 7 to be present at the densities of these fish found in Shark River Slough marshes. Predation by adult mosquitofish on juvenile fish, including conspecifics, was the strongest effect observed. We also observed growth limitation in mosquitofish and sailfin molly juveniles from intra- and interspecific competition. When maintained at high densities, juvenile mosquitofish changed their diets to include more cladocerans and fewer chironomid larvae relative to low densities. We estimated size-specific gape limitation by adult mosquitofish when consuming juvenile mosquitofish and sailfin mollies. At high field densities, intraspecific competition might prolong the time period when juveniles are vulnerable to predation by adult mosquitofish. These results suggest that path analysis, or other techniques used to document food-web interactions, must include age-specific roles of these fishes.     

Disturbance regime and limits on benefits of refuge use for fishes in a fluctuating hydroscape

Refuge habitats increase survival rate and recovery time of populations experiencing environmental disturbance, but limits on the ability of refuges to buffer communities are poorly understood. We hypothesized that importance of refuges in preventing population declines and alteration in community structure has a non‐linear relationship with severity of disturbance. In the Florida Everglades, alligator ponds are used as refuge habitat by fishes during seasonal drying of marsh habitats. Using an 11‐year record of hydrological conditions and fish abundance in 10 marshes and 34 alligator ponds from two regions of the Everglades, we sought to characterize patterns of refuge use and temporal dynamics of fish abundance and community structure across changing intensity, duration, and frequency of drought disturbance. Abundance in alligator ponds was positively related to refuge size, distance from alternative refugia (e.g. canals), and abundance in surrounding marsh prior to hydrologic disturbance. Variables negatively related to abundance in alligator ponds included water level in surrounding marsh and abundance of disturbance‐tolerant species. Refuge community structure did not differ between regions because the same subset of species in both regions used alligator ponds during droughts. When time between disturbances was short, fish abundance declined in marshes, and in the region with the most spatially extensive pattern of disturbance, community structure was altered in both marshes and alligator ponds because of an increased proportion of species more resistant to disturbance. These changes in community structure were associated with increases in both duration and frequency of hydrologic disturbance. Use of refuge habitat had a modal relationship with severity of disturbance regime. Spatial patterns of response suggest that decline in refuge use was because of decreased effectiveness of refuge habitat in reducing mortality and providing sufficient time for recovery for fish communities experiencing reduced time between disturbance events.     

Spatial patterns of fish communities along two estuarine gradients in southern Florida

In tropical and subtropical estuaries, gradients of primary productivity and salinity are generally invoked to explain patterns in community structure and standing crops of fishes. We documented spatial and temporal patterns in fish community structure and standing crops along salinity and nutrient gradients in two subtropical drainages of Everglades National Park, USA. The Shark River drains into the Gulf of Mexico and experiences diurnal tides carrying relatively nutrient enriched waters, while Taylor River is more hydrologically isolated by the oligohaline Florida Bay and experiences no discernable lunar tides. We hypothesized that the more nutrient enriched system would support higher standing crops of fishes in its mangrove zone. We collected 50 species of fish from January 2000 to April 2004 at six sampling sites spanning fresh to brackish salinities in both the Shark and Taylor River drainages. Contrary to expectations, we observed lower standing crops and density of fishes in the more nutrient rich tidal mangrove forest of the Shark River than in the less nutrient rich mangrove habitats bordering the Taylor River. Tidal mangrove habitats in the Shark River were dominated by salt-tolerant fish and displayed lower species richness than mangrove communities in the Taylor River, which included more freshwater taxa and yielded relatively higher richness. These differences were maintained even after controlling for salinity at the time of sampling. Small-scale topographic relief differs between these two systems, possibly created by tidal action in the Shark River. We propose that this difference in topography limits movement of fishes from upstream marshes into the fringing mangrove forest in the Shark River system, but not the Taylor River system. Understanding the influence of habitat structure, including connectivity, on aquatic communities is important to anticipate effects of construction and operational alternatives associated with restoration of the Everglades ecosystem.     

Subtroprical wetland fish assemblages and changing salinity regimes: Implications for everglades restoration

During the 1960s, water management practices resulted in the conversion of the wetlands that fringe northeastern Florida Bay (USA) from freshwater/oligohaline herbaceous marshes to dwarf red mangrove forests. Coincident with this conversion were several ecological changes to Florida Bay’s fauna, including reductions in the abundances of top trophic-level consumers: piscivorous fishes, alligators, crocodiles, and wading birds. Because these taxa rely on a common forage base of small demersal fishes, food stress has been implicated as playing a role in their respective declines. In the present study, we monitored the demersal fishes seasonally at six sites over an 8-year time period. During monitoring, extremely high rainfall conditions occurred over a 3.5-year period leading to salinity regimes that can be viewed as “windows” to the area’s natural past and future restored states. In this paper, we: (1) examine the changes in fish communities over the 8-year study period and relate them to measured changes in salinity; (2) make comparisons among marine, brackish and freshwater demersal fish communities in terms of species composition, density, and biomass; and (3) discuss several implications of our findings in light of the intended and unintended water management changes that are planned or underway as part of Everglades restoration. Results suggest the reduction in freshwater flow to Florida Bay over the last several decades has reduced demersal fish populations, and thus prey availability for apex consumers in the coastal wetlands compared to the pre-drainage inferred standard. Furthermore, greater discharge of freshwater toward Florida Bay may result in the re-establishment of pre-1960s fauna, including a more robust demersal-fish community that should prompt increases in populations of several important predatory species.     

Variable growth and longevity of yellow bullhead (Ameiurus natalis) in the Everglades of south Florida,USA

Yellow bullhead (Ictaluridae: Ameiurus natalis) is the most abundant ictalurid catfish in the Everglades of southern Florida, USA, and, as both prey and predator, is one of many essential components in the ecological‐simulation models used in assessing restoration success in the Everglades. Little is known of its biology and life history in this southernmost portion of its native range; the present study provides the first estimates of age and growth from the Everglades. In total, 144 yellow bullheads of 97–312 mm total length (TL) were collected from canals and marshes of the Everglades between April 2000 and January 2001, and from October 2003 to February 2005. Fish were aged using cross‐sections of pectoral spines and ranged from 1–12 years, with the maximum age almost twice that of any yellow bullhead previously reported. Yellow bullheads from south Florida grew relatively rapidly during their first 3 years, but after age 5 growth slowed and fish approached an asymptote of ～214 mm TL. Compared to other populations in the United States, yellow bullhead in the Everglades grew relatively slowly, were smaller at age overall, but survived to older ages.     

Extinction-colonization dynamics structure genetic variation of spotted sunfish (Lepomis punctatus) in the Florida Everglades

The population genetics of aquatic animals in the Florida Everglades may be strongly influenced by extinction and colonization dynamics. We combined analyses of allozyme and microsatellite loci to test the hypothesis that two levels of population structure are present for spotted sunfish (Pisces: Centrarchidae: Lepomis punctatus) inhabiting the Everglades. We hypothesized that annual cycles of marsh dry-down increase local-scale genetic variation through a process of local extinction and colonization; we hypothesized that barriers to gene flow by levee/canal systems create a second, regional level of genetic variation. In 1996 and 1997, we sampled spotted sunfish from 11 Everglades sites that were distributed in three regions separated by levees. We documented patterns of genetic variation at 7 polymorphic allozyme loci and 5 polymorphic microsatellite loci. Most genetic variation was present among local populations, according to both types of genetic markers. Furthermore, samples from marsh sites were heterogeneous, while those from canals were not. These data supported our hypothesis that dry-down events and local population dynamics in the marsh have a significant effect on population genetic structure of spotted sunfish. We found no support for our hypothesis that water-management structures superimpose a second level of genetic structure on this species, possibly because canals obscure historical structure by facilitating gene flow or because the complete canal system has been in place for fewer than 20 generations of this species. Our data suggests a continent-island (canal-marsh) structure of populations with high gene flow among regions and recurrent mixing in marshes from canal and creek habitats.     

Evaluation of and insights from ALFISH: a spatially explicit, landscape-level simulation of fish populations in the Everglades

We present an evaluation of a spatially explicit, age-structured model created to assess fish density dynamics in the Florida Everglades area. This model, ALFISH, has been used to compare alternative management scenarios for the Florida Everglades region. This area is characterized by periodic dry downs and refloodings. ALFISH uses spatially explicit water depth data to predict patterns of fish density. Here we present a method for calibration of ALFISH, based on information concerning fish movement, pond locations and other field data. With the current information, the greatest coefficient of determination achieved from regressions of ALFISH output to field data is 0.35 for fish density and 0.88 for water depth. The poor predictability of fish density mirrors the empirical findings that hydrology, which is the main driver of the model, only accounts for 20–40% of the variance of fish densities across the Everglades landscape. Sensitivity analyses indicate that fish in this system are very sensitive to frequency, size and location of permanent ponds as well as availability of prey.     

Spatially explicit population responses of crayfish Procambarus alleni to potential shifts in vegetation distribution in the marl marshes of Everglades National Park,USA

Hydropattern disturbance has had wide-ranging impacts on wetland communities of the Florida Everglades, especially on the habitats and the aquatic biota of the seasonally flooded marl marshes. We used the Everglades crayfish Procambarus alleni as a model to study the associations among hydrology, vegetation distribution, and population dynamics to assess the potential impacts of hydrological changes on the aquatic faunal community in Everglades National Park. To classify benthic habitats as sources or sinks for the crayfish population, we quantified vegetation community structure using GIS maps in which dominant vegetation types were weighted by local hydroperiod (length of inundation). Regression analysis showed that this habitat classification was associated with crayfish density distribution. We then used a spatially explicit, stage-structured population model to describe crayfish population fluctuations under current environmental conditions and to simulate the potential population-level responses to habitat changes that might occur following hydrological restoration. In habitat that was initially saturated with crayfish, the crayfish population size declined under current environmental conditions and then stabilized at about 13% of the initial density over a 50-year period. A 4-month increase in hydroperiod was then simulated by converting shorter-hydroperiod Muhlenbergia-dominated marsh habitat to longer-hydroperiod Cladium-dominated marshes. The model predicted a rapid 7-fold increase in crayfish density following the simulated habitat restoration. This indicated that several functional effects may result from the restoration of historical hydropatterns in marl marshes: (1) the areal extent of habitat sinks will be reduced to isolated patches, whereas the spatial distribution of aquatic source habitats will expand; (2) crayfish population size will increase and persist over time; (3) the minimum threshold needed to increase secondary aquatic productivity may be a 7-month hydroperiod over 90% of the marl marsh landscape. Restoration of historical hydropatterns could thus have cascading positive effects throughout the Everglades aquatic food web.     

Modeling fish dynamics and effects of stress in a hydrologically pulsed ecosystem

Many wetlands undergo seasonal cycles in precipitation and water depth.This environmental seasonality is echoed in patterns of production of fishbiomass, which, in turn, influence the phenology of other components of thefood web, including wading birds. Human activities, such as drainage orother alterations of the hydrology, can exacerbate these natural cycles andresult in detrimental stresses on fish production and the higher trophic levels dependent on this production. In this paper we model theseasonal pattern of fish production in a freshwater marsh, with specialreference to the Everglades/Big Cypress region of southern Florida.The model illustrates the temporal pattern of production through theyear, which can result in very high densities of fish at the end of ahydroperiod (period of flooding), aswell as the importance of ponds and other deep depressions, both as refugia and sinks during dry periods. The model predicts that: (1) there is an effective threshold in the length of the hydroperiod that must beexceeded for high fish-population densities to be produced, (2) large,piscivorous fishes do not appear tohave a major impact on smaller fishes in the marsh habitat, and (3) therecovery of small-fish populations in the marsh following a major droughtmay require up to a year. The last of these results is relevant toassessing anthropogenic impacts on marsh production, as these effectsmay increase the severity and frequency of droughts.     

System controls on the aqueous distribution of mercury in the northern Florida Everglades

The forms and partitioning of aqueous mercury species in the canals and marshes of the Northern Florida Everglades exhibit strong spatial and temporal variability. In canals feeding Water Conservation Area (WCA) 2A, unfiltered total Hg (HgT_U) is less than 3 ng L^-1 and relatively constant. In contrast, methyl mercury (MeHg) exhibited a strong seasonal pattern, with highest levels entering WCA-2A marshes during July. Stagnation and reduced flows also lead to particle enrichment of MeHg. In the marshes of WCA-2A, 2B and 3A, HgT_U is usually <5 ng L^-1 with no consistent north–south patterns. However, for individual dates, aqueous unfiltered MeHg (MeHg_U) levels increase from north to south with generally lowest levels in the eutrophied regions of northern WCA-2A. A strong relationship between filtered Hg species and dissolved organic carbon (DOC), evident for rivers draining wetlands in Wisconsin, was not apparent in the Everglades, suggesting either differences in the binding sites of DOC between the two regions, or non-organic Hg complexation in the Everglades.     

Fish recruitment in a canal with intensive navigation: implications for ecosystem management

The young-of-the-year (YOY) fish community in Oder-Havel-Kanal, a navigable canal in the German lowlands, assessed from May to October 1999, was dominated by tolerant species especially roach Rutilus rutilus and perch Perca fluviatilis . Roach dominance was high in May and June and low during the rest of the sampling period. The dominance pattern of perch was inversely related to that of roach. Significantly higher densities of significantly smaller YOY fishes were found in bays compared with the straight reaches of the main channel which was the result of an aggregation of 0+ year roach in bays in May and June. Parallel to low structural variability (spawning and nursery habitats), the intensive ship traffic may have been a major force structuring the fish communities in the canals. Measured ship-induced flow velocity in straight reaches was about four times higher than in bays of the canal. Maximum flow velocities caused by barge tows were also four times higher than those induced by pleasure boats. The study demonstrated the relatively low fish reproductive potential of a navigable, artificially embanked lowland canal. To improve fish reproduction, modification of canal banks is highly advisable to preserve existing bays and tributaries and even to create additional ones.     

Density-habitat relationships of mangrove creek fishes within the southeastern saline Everglades (USA), with reference to managed freshwater releases

The Comprehensive Everglades Restoration Plan aims to make considerable changes to the quantity, quality, and timing of freshwater delivery to the southeastern saline Everglades (SESE), a mangrove ecosystem located between the freshwater Everglades and downstream estuarine embayments. Whereas fishes inhabiting seasonally-inundated areas of the SESE and the shorelines of downstream embayments have been examined, those utilizing the creeks connecting these ecotones have not. To evaluate the functional role of the creek habitat and the possible impact of future hydrologic changes on the fishes inhabiting them, 228 underwater visual surveys were performed at three locations of the SESE over a three-year period. Fish abundance data was related to structural habitat, water level, and salinity over various time periods. The SESE contains taxa from both the freshwater Everglades and downstream embayments, but does not appear to function as a nursery for most fishery taxa. Abiotic variability and fish diversity increased with distance from major freshwater sources. Though there were significant differences in the physical structure of mangrove trees among locations, few meaningful correlations between these parameters and the density of individual fish taxa were found. Small prey-base fishes (<10 cm TL) utilize the expansive ephemeral wetlands (i.e., upper mangle) during wet periods, and were concentrated into deeper creeks when these wetlands became dry. Densities of these fishes increase on the upper mangle with increased flooding (hydroperiod), and we observed greater densities of larger species in the creeks when hydroperiods exceeded 240 days. Based on these results, we recommend that water management create water releases which result in a wet period of ca. 240 days, followed by a gradual dry period lasting ca. 90 days.     

The conservation and status of threatened fishes in southern Africa

The conservation status of 24 threatened freshwater fishes and seven estuarine fishes from southern Africa is discussed against the background of natural and anthropogenic environmental factors. The majority of threatened species are endemic temperate forms with restricted ranges. Major threats include introduced alien fishes and a wide spectrum of environmentally destructive causes. Research on threatened species includes distribution surveys, biological and ecological studies and methods of artificial propagation. Long-term remedies based on ecosystem conservation are also being promoted. The perceptions and attitudes of nature conservation authorities are adjusting to the new challenges offish conservation. The number of threatened fishes in Africa is likely to increase in the face of escalating problems of habitat destruction and degradation.     

Different Surrounding Landscapes may Result in Different Fish Assemblages in East African Seagrass Beds

Few studies have considered how seagrass fish assemblages are influenced by surrounding habitats. This information is needed for a better understanding of the connectivity between tropical coastal ecosystems. To study the effects of surrounding habitats on the composition, diversity and densities of coral reef fish species on seagrass beds, underwater visual census surveys were carried out in two seagrass habitat types at various locations along the coast of Zanzibar (Tanzania) in the western Indian Ocean. Fish assemblages of seagrass beds in a marine embayment with large areas of mangroves (bay seagrasses) situated 9 km away from coral reefs were compared with those of seagrass beds situated on the continental shelf adjacent to coral reefs (reef seagrasses). No differences in total fish density, total species richness or total juvenile fish density and species richness were observed between the two seagrass habitat types. However, at species level, nine species showed significantly higher densities in bay seagrasses, while eight other species showed significantly higher densities in reef seagrasses. Another four species were exclusively observed in bay seagrasses. Since seagrass complexity could not be related to these differences, it is suggested that the arrangement of seagrass beds in the surrounding landscape (i.e. the arrangement on the continental shelf adjacent to the coral reef, or the arrangement in an embayment with mangroves situated away from reefs) has a possible effect on the occurrence of various reef-associated fish species on seagrass beds. Fish migration from or to the seagrass beds and recruitment and settlement patterns of larvae possibly explain these observations. Juvenile fish densities were similar in the two types of seagrass habitats indicating that seagrass beds adjacent to coral reefs also function as important juvenile habitats, even though they may be subject to higher levels of predation. On the contrary, the density and species richness of adult fish was significantly higher on reef seagrasses than on bay seagrasses, indicating that proximity to the coral reef increases density of adult fish on reef seagrasses, and/or that ontogenetic shifts to the reef may reduce adult density on bay seagrasses.     

The biology of the common carp, Cyprinus carpio L. in the Camargue, southern France

Carp were sampled monthly during one and a half years in the Etang du Vaccarès, Camargue, southern France using fyke nets. Densities of carp in temporary marshes and canals were determined using rotenone. Carp is the dominant species in biomass in the fresh and brackish waters (14%0) with densities from 11–58 kg/ha in temporary marshes and up to ten times greater in the canals. Scales were used to determine age and growth of 201 carp. The relative condition factor of female and male mature and unsexed fish are not statistically different throughout the year and follow the variations of gonadal development in spring. The best predictive equation of fecundity, Log F = 7.03504 + 0.83829 log ovary weight, was found using a stepwise multiple regression. The sex-ratio in the temporary marshes (♂ : ♀; 1.66–1.76) is greater than the general sex-ratio of the monthly samples (0.67). The diet of carp is characterized by the presence of large numbers of seeds and the absence of large benthic invertebrates. Predation by fish-eating birds and carnivorous fish is minimal, and the annual drying of many marshes is considered the main mortality factor., Accepted 22 July 1980     

Backwater areas as nursery habitats for fishes in pool 13 of the Upper Mississippi River

Samples of larval and juvenile fishes were collected at two depths weekly during spring and summer 1983 near the mouths of backwater areas in Pool 13 of the Upper Mississippi River. The study was conducted to determine the relative value of these habitats as nursery areas for fishes present and to note any interactions that might occur between the backwaters which are being rapidly lost to siltation, and the main channel. The larvae and juveniles collected represented 13 families divided into 27 lower taxa. Cyprinidae, Clupeidae, and Sciaenidae made up 90% of the total catch. Both larvae and juveniles were more abundant near the surface than near the bottom. Densities differed greatly among the three backwater areas studied. Larval fishes were grouped on the basis of their relative abundance in the backwaters or main channel. Overall, more larvae were captured in the backwaters than in main-channel habitats, indicating that backwaters were more productive. In the main channel, densities were greater downstream from the mouths of the backwaters than upstream-possibly indicating that (1) larval fish drifted out of the backwater areas, (2) water rich in nutrients or zooplankton that flowed into the main channel created productive downstream sites that were used as nursery areas, or (3) adult fishes selected downstream sites as spawning areas. Juvenile forms were more abundant in the backwater areas then in the main-channel habitats, some bottom-dwelling fishes excepted. The backwater areas were judged to be important nursery areas for larval and juvenile fishes, and seemed to benefit downstream main-channel sites. Any loss of these habitats would be detrimental to the Mississippi River as a whole.     

Tradeoffs between fine‐scale site measurements and coarse sensory data for long‐term monitoring of pulsed wetlands

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Distribution of the freshwater fishes of Japan: an historical overview

Japanese freshwater fishes, including lampreys, comprise 15 orders, 35 families, and 96 genera, with 211 species and subspecies. Most belong to the families Cyprinidae (29% of species and subspecies), Gobiidae (21%), Salmonidae (10%), and Cobitidae (8%). Cyprinids and cobitids presumably originated from east Asia, gobiids from southeast Asia, and cottids and salmonids from the north Pacific. Japanese freshwater fishes include 88 endemic species and subspecies, of which three have been extirpated. Fishes introduced into natural rivers and lakes for inland commercial fisheries and sport fishing, and by accident, include many exotic species, of which 23 now inhabit natural freshwaters. These often have destroyed the local fish fauna by predation, and caused genetic pollution by hybridization with local strains. Destruction of freshwater environments by land development also poses a threat to Japanese freshwater fish communities. In addition Japanese freshwater systems have been markedly altered by development of rice paddy fields which have caused some species to decline but others to flourish, and changed the distribution patterns of fishes between upstream and downstream areas. To conserve endangered species and declining communities of Japanese freshwater fishes, we need to clarify the characteristics of their original habitats and the effects of developing paddy fields, from both the ecological and historical points of view.