Phototrophic Biofilms on Ancient Mayan Buildings in Yucatan, Mexico

Buildings at the important archaeological sites of Uxmal and Kabah, Mexico, are being degraded by microbial biofilms. Phospholipid fatty acid (PLFA) and chlorophyll a analyses indicated that phototrophs were the major epilithic microorganisms and were more prevalent on interior walls than exterior walls. Culture and microscopical techniques showed that Xenococcus formed the major biomass on interior surfaces, but the stone-degrading genera Gloeocapsa and Synechocystis were also present in high numbers. Relatively few filamentous algae and cyanobacteria were detected. The fatty acid analysis also showed that complex biofilms colonize these buildings. Circular depressions observed by scanning electron microscopy (SEM) on stone and stucco surfaces beneath the biofilm corresponded in shape and size to coccoid cyanobacteria. SEM images also demonstrated the presence of calcareous deposits on some coccoid cells in the biofilm. Phototrophic biofilms may contribute to biodegradation by (1) providing nutrients that support growth of acid-producing fungi and bacteria and (2) active “boring” behavior, the solubilized calcium being reprecipitated as calcium carbonate. Received: 15 March 1999 / Accepted: 24 June 1999     

Cyanobacteria and Cyanobacterial Lichens from Inselbergs of the Ivory Coast,Africa

This study focuses on the saxicolous lichens and cyanobacteria of the open, exposed rock surface of inselbergs. Twenty-three species of cyanobacteria and 17 cyanobacterial lichen species (“cyanolichens”) from several inselbergs and other rocky outcrops of three major climatic regions, savanna, transition zone and rain forest, are reported from the Ivory Coast. Inselbergs are isolated and frequently mountains consisting of Precambrian granites or gneisses that abruptly rise from the surrounding plains. Cyanobacteria were found to be the dominating organisms on all rock surfaces. The lichens found mainly belong to the family Peltulaceae and a few were present from the family Lichinaceae. Nine species of the cyanolichens and most of the cyanobacteria are new for the Ivory Coast. A gradient in total species number (cyanolichens and cyanobacteria) occurs from the savanna to the rain forest, with a decrease in species number towards the rain forest. Saxicolous cyanobacterial lichens reached a higher species number in the savanna type ecosystem (11) than on inselbergs in the rain forest (7). The cyanolichens and cyanobacteria found are characteristic for larger, light-exposed rock surfaces and species like P. congregate, P. lingulata, P. tortuosa and P. umbilicata preferentially occur on the granite or sandstone of inselbergs.     

Notes on the Diatomaceae of Ahmedabad and its environs

Synopsis In this note the Diatoms from the Gujarat College compound are systematically described and some notes or remarks are given on their occurrence, ecology and distribution in the region of Ahmedabad.Summary While summarizing the results of the present investigation, the following could be stated:that with the exception of two small notes by the author there exists little information of the Diatomflora of Ahmedabad region.The diatoms of the present area are a special kind of biotopes characterised by small size. However, the causes leading to this nannism remain to be determined.The observations regarding Caloneis beccariana (Grun.) Cl. and Amphiprora paludosa W S m. v. subsalina Cl., found to be in close harmony with those of HUSTEDT and CLEVE, respectively and further it is confirmed that they are very variable species.The water of the present locality could be called somewhat brackish on the basis of a large number of salt-loving diatoms being found here. Moreover, they are all alkaliphilous even the new entities with the exception of two which are known to be indifferent for the pH.In light of the existing Halobion data and local observations some of the new entities and a few others are assigned their Halobion status. The spectrum relating to the same is also given.The distribution of these diatoms is indicated for the region of Ahmedabad.With regard to their periodicity recorded for over a year it was observed that almost all the species were perennials and a few among them showed slight rises any time from September to December.Lastly, in all twenty-three diatoms are recorded from the present area representing ten genera. Of these, six are new records for India and three species and one variety is considered to be new.     

Cyanobacteria of Rocks and Soils of the Orinoco Lowlands and the Guayana Uplands,Venezuela

The occurrence of 23 cyanobacterial species, belonging to 9 different genera and 5 cyanobacterial lichen species of 5 different genera on exposed, open rock surfaces of inselbergs and on soil in savannas of the Orinoco lowlands and the Guayana uplands is described. Their distribution patterns and frequency within the different habitats are given. The filamentous procaryotic blue-green algae/cyanobacteria Stigonema ocellatum and Scytonema crassum, together with the unicellular cyanobacterium Gloeocapsa sanguinea were the most frequent species on rocks, whereas the filamentous cyanobacterium, Schizothrix telephoroides, dominated in cyanobacterial mats on the savanna soil. All species showed intensively coloured sheaths, either brown or yellow in the case of Stigonema ocellatum and Scytonema crassum, or red in Gloeocapsa sanguinea and Schizothrix telephoroides. In addition, a number of cyanobacterial lichens occurred.     

Seasonal succession of phytoplankton in Lake Yogo over 2 years: effect of artificial manipulation

We studied the seasonal variation in concentrations of nutrients and phytoplankton in Lake Yogo for 2 years, from May 2000 to May 2002, in order to clarify the seasonal succession of phytoplankton and the effect of various manipulations on it. It was revealed that in spite of the installation of aeration systems and the pumping of mesotrophic water from Lake Biwa during the summer season, the trophic state of Lake Yogo overall has not improved during the past few decades. However, the pumping of water from Lake Biwa did affect the concentrations of nutrients and the periods of cyanobacterial bloom during the summer. The pumping period was different in each year, and the cyanobacterial bloom occurred during the period without pumping in both years. The aeration destratification was not strong enough to prevent cyanobacterial blooms. Cyanobacteria and Bacillariophyceae contributed most to the phytoplankton biomass in both years. Aphanizomenon, Anabaena, and Microcystis were the main genera among cyanobacteria. The bloom of Aphanizomenon or Anabaena occurred early in the summer, and was then replaced by Microcystis. Aphanizomenon was almost always present, and often formed bloom even in winter. The seasonal succession of Bacillariophyceae was almost the same in both years and was well categorized: winter-growing species such as Aulacoseira pusilla (F. Meister) Tuji et Houki and species of Thalassiosiraceae, spring-growing species such as Asterionella formosa Hassall, Fragilaria crotonensis Kitton, and Synedra cf. acus, and fall-growing species such as Aulacoseira ambigua (Grunow) Simonsen, and Aulacoseira granulata (Ehrenb.) Simonsen.     

Zooplankton of Lake Titicaca on the Bolivian side

Summary The zooplankton, especially the Cladocera and the Copepoda, of Lake Titicaca on the Bolivian side is reported on the basis of a collection made in April 1961. The zooplankton at that time was sparse, consisting only of seven species. Boeckella titicacae Harding is the dominant copepod and B. occidentalis Marsh is also abundant, as in the previous records obtained by the Percy Sladen Expedition in 1937. The Cladocera are poorly represented in the plankton by Ceriodaphnia quadrangula (O. F. Müller), Bosmina cf. hagmanni Stingelin and a few Daphnia pulex Leydig. In a pond near the village of Belen, close to the east coast of the large lake were found 14 species of zooplankters, most of which were living among aquatic vegetation and did not occur in Lake Titicaca. Some taxonomic and zoogeographic remarks are given on some species.Kyoto UniversitySakarazuka-Hondori 2–18, Toyonaka-shi near Osaka, Japan     

Image analysis as a tool for quantitative phycology: a computational approach to cyanobacterial taxa identification

In the following work we discuss the application of image processing and pattern recognition to the field of quantitative phycology. We overview the area of image processing and review previously published literature pertaining to the image analysis of phycological images and, in particular, cyanobacterial image processing. We then discuss the main operations used to process images and quantify data contained within them. To demonstrate the utility of image processing to cyanobacteria classification, we present details of an image analysis system for automatically detecting and classifying several cyanobacterial taxa of Lake Biwa, Japan. Specifically, we initially target the genus Microcystis for detection and classification from among several species of Anabaena. We subsequently extend the system to classify a total of six cyanobacteria species. High-resolution microscope images containing a mix of the above species and other nontargeted objects are analyzed, and any detected objects are removed from the image for further analysis. Following image enhancement, we measure object properties and compare them to a previously compiled database of species characteristics. Classification of an object as belonging to a particular class membership (e.g., “Microcystis,”“A. smithii,”“Other,” etc.) is performed using parametric statistical methods. Leave-one-out classification results suggest a system error rate of approximately 3%. Received: September 6, 1999 / Accepted: February 6, 2000     

Stone Age settlements at Sørøya, sub-arctic Norway: impact on the vegetation

Four pollen diagrams, which together cover the period 10400 cal bp to the present, from an area rich in Stone Age house foundations show that vegetation was increasingly influenced by man in a stepwise process. There was a modest, temporary appearance of anthropogenically-induced vegetation about 8600 cal bp. After 7100 cal bp there was a development towards semi-open birch woodland where the open patches were characterised by natural heath and meadow species and more typical apophytic taxa such as Ranunculus acris and Rumex acetosa types, grasses and juniper. The main changes towards this vegetation seem connected with the most important cultural changes, especially at about 7100 cal bp, when there was a transition to honed slate tools in the regional archaeology, at about 4000 cal bp when pottery was introduced, and at about 3000–2800 cal bp since when the use of stone artefacts gradually ceased. It is suggested that the settlements were mainly summer habitations.     

Plant–Microbe Interactions: Wetting of Ivy (Hedera helix L.) Leaf Surfaces in Relation to Colonization by Epiphytic Microorganisms

Abstract Leaf wettability, cuticular wax composition, and microbial colonization of upper and lower leaf surfaces of ivy (Hedera helix L.) was investigated for young and old leaves sampled in June and September. Contact angles of aqueous buffered solutions measured on young leaf surfaces ranged between 76° and 86° and were not dependent on the pH value of the applied droplets. Contact angles measured on old leaf surfaces were up to 32°, significantly lower than on young leaf surfaces. Furthermore, contact angles were significantly lower using aqueous solutions of pH 9.0 compared to pH 3.0, indicating the influence of ionizable functional groups on leaf surface wetting properties. Observed changes in leaf wetting properties did not correlate with different levels of alkanoic acids in cuticular waxes. However, microscopic examination of the leaf surfaces indicated the influence of epiphytic microorganisms on wetting properties of old leaves, since their surfaces were always colonized by epiphytic microorganisms (filamentous fungi, yeasts, and bacteria), whereas surfaces of young leaves were basically clean. In order to analyze the effect of epiphytic microorganisms on leaf surface wetting, surfaces of young and clean ivy leaves were artificially colonized with Pseudomonas fluorescens. This resulted in a significant increase and a pH dependence of leaf surface wetting in the same way as it was observed on old ivy leaf surfaces. From these results it can be deduced that the native wetting properties of leaf surfaces can be significantly masked by the presence of epiphytic microorganisms. The ecological implications of altered wetting properties for microorganisms using the leaf/atmosphere interface as habitat are discussed. Received: 20 March 1999; Accepted: 5 July 1999; Online Publication: 18 July 2000     

<Emphasis Type="Italic">Enigmagraptus</Emphasis> n. gen., a new graptoloid (Přídolí, Silurian,New South Wales,Australia)

Enigmagraptus n. gen. comprises a group of the smallest known graptolites, with problematical evolutionary ancestors. The species described, all of Přídolí age are:E. yassensis (Rickards &Wright, 1999),E. cf.yassensis, E. mitchelli (Rickards &Wright, 1999) andE. pennyae n. sp.      

Stimulation of aquatic bacterial activity by cyanobacteria

The time-course response of natural bacterial populations and isolates from lake water to various densities of the filamentous cyanobacteriaAphanizomenon flos-aquae andLyngbya birgei collected from the same lake is reported. The cyanobacteria were separated from the bacteria by dialysis membranes that allowed only dissolved cyanobacterial products to pass. Bacterial³H-thymidine incorporation and cell number were significantly (p<0.05) correlated with cyanobacterial density for both species. Estimated dissolved organic carbon (DOC) utilization, based on bacterial biomass changes over time, were usually significantly (p<0.01) correlated with cyanobacterial density and the decrease in bulk pool DOC for both species. Bacterial volume per cell increased significantly (p<0.05) in response to cyanobacterial density on day 5 of the experiments; cell volume remained unchanged on day 1. Bacterial cell numbers on outer surfaces of the tubular membrane containing the cyanobacteria (on the side exposed to the test bacteria) were significantly (p<0.01) correlated with cyanobacterial density. Statistical analysis inferred that bacteria closely associated with cyanobacteria (i.e. attached) responded more strongly to cyanobacterial products than free-living bacteria. Overall, our results indicate that cyanobacterial products have a potentially important role in regulating bacterioplankton productivity in aquatic systems.     

Synechococcus: 3 billion years of global dominance

Cyanobacteria are among the most important primary producers on the Earth. However, the evolutionary forces driving cyanobacterial species diversity remain largely enigmatic due to both their distinction from macro‐organisms and an undersampling of sequenced genomes. Thus, we present a new genome of a Synechococcus‐like cyanobacterium from a novel evolutionary lineage. Further, we analyse all existing 16S rRNA sequences and genomes of Synechococcus‐like cyanobacteria. Chronograms showed extremely polyphyletic relationships in Synechococcus, which has not been observed in any other cyanobacteria. Moreover, most Synechococcus lineages bifurcated after the Great Oxidation Event, including the most abundant marine picoplankton lineage. Quantification of horizontal gene transfer among 70 cyanobacterial genomes revealed significant differences among studied genomes. Horizontal gene transfer levels were not correlated with ecology, genome size or phenotype, but were correlated with the age of divergence. All findings were synthetized into a novel model of cyanobacterial evolution, characterized by serial convergence of the features, that is multicellularity and ecology.     

Bio-optical Characteristics and the Vertical Distribution of Photosynthetic Pigments and Photosynthesis in an Artificial Cyanobacterial Mat

Abstract Zonations of photosynthesis and photopigments in artificial cyanobacterial mats were studied with (i) oxygen and pH microsensors, (ii) fiber-optic microprobes for field radiance, scalar irradiance, and PSII fluorescence, and (iii) a light microscope equipped with a spectrometer for spectral absorbance and fluorescence measurements. Our analysis revealed the presence of several distinct 1–2 mm thick cyanobacterial layers mixed with patches of anoxygenic photosynthetic bacteria. Strong attenuation of visible light confined the euphotic zone to the uppermost 3 mm of the mat, where oxygen levels of 3–4 times air saturation and a pH peak of up to pH 8.8 were observed under saturating irradiance (413 μmol photon m⁻² s⁻¹). Oxygen penetration was 5 mm in light and decreased to 1 mm in darkness. Volumetric oxygen consumption in the photic and aphotic zones of illuminated mat was 5.5 and 2.9 times higher, respectively, than oxygen consumption in dark incubated mats. Scalar irradiance reached 100–150% of incident irradiance in the upper 0.5 mm of the mat due to intense scattering in the matrix of cells, exopolymers, and carbonate precipitates. In deeper mat layers scalar irradiance decreased nearly exponentially, and highest attenuation coefficients of 6–7 mm⁻¹ were found in cyanobacterial layers, where photosynthesis and photopigment fluorescence also peaked. Visible light was attenuated >100 times more strongly than near infrared light. Microscope spectrometry on thin sections of mats allowed detailed spectral absorbance and fluorescence measurements at defined positions relative to the mat surface. Besides strong spectral signals of cyanobacterial photopigments (Chl a and phycobiliproteins), the presence of both green and purple photosynthetic bacteria was evident from spectral signals of Bchl a and Bchl c. Microprofiles of photopigment absorbance correlated well with microdistributions of phototrophs determined in an accompanying study. Received: 20 December 1999; Accepted: 10 June 2000; Online Publication: 28 August 2000     

Natural Endophytic Occurrence of Acetobacter diazotrophicus in Pineapple Plants

Abstract The presence of endophytic Acetobacter diazotrophicus was tested for pineapple plants (Ananas comosus [L.] Merr.) grown in the field. Diazotrophic bacteria were isolated from the inner tissues of surface sterilized roots, stems, and leaves of pineapple plants. Phenotypic tests permitted the selection of presumptive nitrogen-fixing A. diazotrophicus isolates. Restriction fragment length polymorphisms (RFLPs) of small subunit (SSU) rDNA using total DNA digested with endonuclease SphI and with endonuclease NcoI, hybridizations of RNA with an A. diazotrophicus large subunit (LSU) rRNA specific probe, as well as patterns in denaturing protein electrophoresis (SDS-PAGE) and multilocus enzyme tests allowed the identification of A. diazotrophicus isolates. High frequencies of isolation were obtained from propagative buds that had not been nitrogen-fertilized, and lower frequencies from 3-month-old plants that had been nitrogen-fertilized. No isolates were recovered from 5- to 7-month-old nitrogen-fertilized plants. All the A. diazotrophicus isolates recovered from pineapple plants belonged to the multilocus genotype which shows the most extensive distribution among all host species previously analyzed. Received: 16 March 1999; Accepted: 27 August 1999; Online Publication: 23 February 2000     

Taxonomic Lactobacillus Composition of Feces from Human Newborns during the First Few Days

Abstract Intestinal microbiota comprise a complex ecosystem whose equilibrium is crucial for the health of animal species. For humans, data exist on the microbiota composition in adult subjects, but few studies have addressed the microbiota composition in infants. In particular, data on the presence and species distribution of members of the genus Lactobacillus in newborns (less than one week old) are lacking. In the present work, the feces of healthy newborns were sampled to determine the taxonomic composition of Lactobacillus in the intestinal microbiota in a group of 16 neonates. In total, 1640 colony-forming units (CFU) were isolated, of which 420 grouped in the Lactobacillus genus by means of primary phenotypic characterization. The 420 isolates were further grouped into 125 strains on the basis of identical plasmid profiles. Of these 125 strains, 21 turned out to be permanent, i.e., they were identified in the feces of the same subject on several consecutive days. Sugar fermentation, DNA/DNA hybridization, and S-layer protein determination enabled us to classify 52 of the 125 strains as follows: L. paracasei (40 strains), L. delbrueckii sp. (1 strain), and L. acidophilus (sensu stricto) (11 strains). Based on the same criteria, the remaining 73 strains were tentatively allotted to the Johnson subgroup B, although hybridization experiments with probes specific for L. gasseri and L. johnsonii species were not performed. The presence of new species among these 73 strains cannot be excluded. Surprisingly, the obligately heterofermentative lactobacilli, L. reuteri in particular, were entirely absent from the feces of healthy newborns. Received: 26 March 1997; Accepted: 24 July 1997     

Acclimation of Cyanobacterial Communities in Rice Fields and Response of Nitrogenase Activity to Light Regime

Abstract The short-term and long-term effects of light regime on nitrogenase activity (NA) and cyanobacterial communities in rice fields (Valencia, Spain) were examined. Daily variation in nitrogen fixation was measured during three periods of the crop cycle: tillering (formation of secondary stems in the rice plants), heading (formation of reproductive structures), and maturity. Two locations were examined over two consecutive years (1994 and 1995). Despite differences in the crop-cycle periods, location, and year, a consistent pattern of nitrogen fixation was observed, with a main activity peak in the morning and another in the late evening. Short-term experiments, performed on two cyanobacterial blooms (Nostoc sp. and Anabaena sp.) exposed to natural light under plant canopy (7% incidence irradiance), and to different light intensities under neutral density screens without plant cover (full sunlight, 43%, 26%, and 13% of incident irradiance), indicated that nitrogenase activity (NA) was dependent on both light intensity and quality. In long-term experiments, where natural communities of cyanobacteria were exposed to one month of different light intensities, changes in the species composition of the three main genera of heterocystous cyanobacteria (Nostoc, Anabaena, and Calothrix) were observed. The light intensity at which communities were exposed for one month became the optimum irradiance for NA for each cyanobacterial community. Assays performed at higher or lower irradiances showed lower NA. Nitrogen fixation followed a pattern of seasonal variation along the crop cycle. Values were low at the beginning of the crop (May), reached a maximum value at the end of the tillering stage (June), and declined thereafter until the end of the cultivation cycle (September). Received: 25 February 1997; Accepted: 8 July 1997     

A contribution to the knowledge of common Turkish higher fungi

There are many publications about the microfungi, but only few papers on the higher fungi of Turkey.Pilat (1932) is the first investigator of Turkish larger fungi as far as the author is aware from the literatures. He has found 68 species of fungi from four different families. SecondZeybek's work is about one species ofMorchella that was found in the Western part of Anatolia.We have identified 100 higher fungi from the 10 different families in the present work. Most of the identified species were collected in the vicinities of Izmir and Istanbul within the years of 1968 and 1971. The list of higher fungi species which we have found is below according to the families.     

Interspecific Interactions among Tropical and Subtropical Freshwater Fungi

Abstract Twenty-seven species of tropical and subtropical fungi isolated from freshwater were examined for evidence of interspecific interactions, which are important in determining the ecological roles of fungi. Evidence for interspecific interactions was examined by inoculating paired fungi 25 mm apart on the surface of agar plates. The antagonistic activities were different among different isolates and even between isolates of the same species, for example, Ophioceras dolichostomum isolated from different origins. Pseudohalonectria longirostrum and Kirschsteiniothelia elaterascus, which produced pigment in culture, were strongly inhibitory species. Several aquatic hyphomycetes seems to be less competitive and less likely to produce antagonistic substances. Competitive abilities were also influenced by the range of enzymes that a fungus produced. For example, Verticillium sp. and Diaporthe sp., which produced only one or two kinds of enzyme, were found to exhibit weak competitive abilities and were easily replaced. The results of competition experiments also showed that slow-extending fungi (e.g., Pseudohalonectria longirostrum and Kirschsteiniothelia elaterascus) were more competitive than early fast-extending fungi (e.g., Ophioceras dolichostomum and Nectria haematococca). Received: 13 October 1998; Accepted: 3 March 1999     

Bias Caused by Using Different Isolation Media for Assessing the Genetic Diversity of a Natural Microbial Population

Abstract The influence of isolation medium on the biodiversity of Burkholderia cepacia strains recovered from the rhizosphere of Zea mays was evaluated by comparing the genetic diversity of isolates obtained by plating serial dilutions of root macerates on the two selective media TB-T and PCAT. From each medium, 50 randomly chosen colonies were isolated. On the basis of the restriction patterns of DNA coding for 16S rRNA (16S rDNA) amplified by means of PCR (ARDRA), all strains isolated from TB-T medium were assigned to the B. cepacia species, whereas among PCAT isolates only 74% were assigned to the B. cepacia species. Genetic diversity among the PCAT and TB-T isolates was evaluated by the random amplified polymorphic DNA (RAPD) technique. The analysis of molecular variance (AMOVA) method was applied to determine the variance component for RAPD patterns. Most of the genetic diversity (90.59%) was found within the two groups of isolates, but an appreciable amount (9.41%) still separated the two groups (P < 0.001). Mean genetic distances among PCAT isolates (10.39) and TB-T isolates (9.36) were significantly different (P < 0.0001). The results indicate that the two different isolation media select for B. cepacia populations with a different degree of genetic diversity. Moreover, a higher degree of genetic diversity was observed among strains isolated from PCAT medium than among those isolated from TB-T medium. Received: 29 April 1999; Accepted: 27 January 2000; Online Publication: 28 August 2000