Genetic isolation in an endemic African habitat specialist

The Chestnut‐banded Plover Charadrius pallidus is a Near‐Threatened shorebird species endemic to mainland Africa. We examined levels of genetic differentiation between its two morphologically and geographically distinct subspecies, C. p. pallidus in southern Africa (population size 11 000–16 000) and C. p. venustus in eastern Africa (population size 6500). In contrast to other plover species that maintain genetic connectivity over thousands of kilometres across continental Africa, we found profound genetic differences between remote sampling sites. Phylogenetic network analysis based on four nuclear and two mitochondrial gene regions, and population genetic structure analyses based on 11 microsatellite loci, indicated strong genetic divergence, with 2.36% mitochondrial sequence divergence between individuals sampled in Namibia (southern Africa) and those of Kenya and Tanzania (eastern Africa). This distinction between southern and eastern African populations was also supported by highly distinct genetic clusters based on microsatellite markers (global F_ST = 0.309,  = 0.510, D = 0.182). Behavioural factors that may promote genetic differentiation in this species include habitat specialization, monogamous mating behaviour and sedentariness. Reliance on an extremely small number of saline lakes for breeding and limited dispersal between populations are likely to promote reproductive and genetic isolation between eastern and southern Africa. We suggest that the two Chestnut‐banded Plover subspecies may warrant elevation to full species status. To assess this distinction fully, additional sample collection will be needed, with analysis of genetic and phenotypic traits from across the species’ entire breeding range.     

Inland salt waters of southern Africa

Inland salt lakes are widely distributed in southern Africa: they are particularly common in South Africa, but many occur in Namibia and Botswana. All are shallow, and most are ephemeral with salinities that are not very high (mostly < 50 g l⁻¹). Fringing zones of halophytes or submerged macrophytes are neither well-developed nor taxonomically diverse. The Cyanobacteria, especially Nodularia spumigena, often dominate the phytoplankton. The fauna of the Makgadikgadi area (northeast Botswana) is diverse and is similar to that of East African salt lakes. The aquatic fauna of salt water south of the Makgadikgadi Basin, on the other hand, is extremely depauperate, has no well-defined assemblage confined to saline waters, and appears mostly to comprise tolerant freshwater forms. Lovenula falcifera and Metadiaptomus transvaalensis (diaptomid copepods), Moina micrura (Cladocera) and Brachionus plicatilis (Rotifera) are frequently encountered zooplankton species, a few species of insects (Anisops sp., beetles, chironomids and ephydrids) are the principal non-planktonic macroinvertebrates. Artemia ‘salina’ is occasionally present, but may be an introduced form. The avifauna, in contrast to the aquatic macroinvertebrate fauna, is rich, with the greater and lesser flamingo often common.     

A conservation assessment of the freshwater crabs of southern Africa (Brachyura: Potamonautidae)

Recent taxonomic revisions of the freshwater crabs of southern Africa (Angola, Botswana, Lesotho, Mozambique, Namibia, South Africa, Swaziland, Zambia and Zimbabwe) allow accurate depictions of their diversity, distribution patterns and conservation status. The southern African region is home to nineteen species of freshwater crabs all belonging to the genus Potamonautes (family Potamonautidae). These crabs show high levels of species endemism (84%) to the southern African region and to the country of South Africa (74%). The conservation status of each species is assessed using the IUCN (2003) Red List criteria, based on detailed compilations of the majority of known specimens. The results indicate that one species should be considered vulnerable, fifteen species least concern and three species data deficient. The results have been utilized by the IUCN for Red Lists, and may prove useful when developing a conservation strategy for southern Africa’s endemic freshwater crab fauna.     

Breeding distribution,population size and conservation of the Greyheaded Gull Larus cirrocephalus in southern Africa

Brooke, R.K., Allan, D.G., Cooper, J., Cyrus, D.P., Dean, W.R.J., Dyer, B.M., Martin, A.P. & Taylor, R.H. 1999. Breeding distribution, population size and conservation of the Greyheaded Gull Larus cirrocephalus in southern Africa. Ostrich 70 (3&4): 157–163.

The Greyheaded Gull Larus cirrocephalus occurs throughout southern Africa, both coastally and inland, and has bred at one time or another at 67 known localities since the 1860s. Most of these sites have been occupied by small numbers of birds, even single pairs, and for only one or a few years. The two principal breeding areas are the East Rand in Gauteng and Lake St Lucia in KwaZulu-Natal, both in South Africa. The next most important sites are Walvis Bay, Namibia and Lake Ngami, Botswana. The total southern African breeding population is estimated as about 2000 pairs. The Greyheaded Gull is not a threatened species in southern Africa, with 27 breeding sites supporting more than half the breeding population within formally conserved areas.     

Southern African skate biodiversity and distribution

The skates (Family Rajidae) have 12 genera and possibly 28 species off southern Africa (southern Angola, Namibia, South Africa and Mozambique). The geographic and bathymetric distribution and the taxonomic composition of the southern African skate fauna are analysed and the distribution mapped. The southern African skate fauna is best known off the temperate west coast of South Africa from the intertidal to approximately 1,200 meters, but poorly known below 1,200 m and sketchily known in warm-temperate and tropical parts of the area. Southern African skates of the temperate continental shelves above 100 m are not diverse and regularly include one species of the genus Dipturus, one species of Leucoraja, two species of Raja (including R. straeleni, the most abundant skate in southern African waters) and the giant skate Rostroraja alba. All of these skates are ‘shelf overlap’ species that range onto the outer shelves and uppermost slopes, and none are confined to inshore environments. Skate diversity increases on the outer shelves and upper slopes. At least half of the skate species are endemic to the southern African region; other species also occur off East or West Africa, a few extend to European waters, and records of one species, Amblyraja taaf, appear to be of strays from nearby sub-Antarctic seas. The genus Bathyraja and softnose skate group (Arhynchobatinae) are surprisingly limited (a single species) in deep-water off southern Africa (unlike other regions including the Antarctic), and almost all of southern African skates are members of the Rajinae. Amongst rajines, the tribes Amblyrajini (Amblyraja, two species, Leucoraja, two species, and Rajella, five species) Rajini (Dipturus, six species, Okamejei, one species, Raja, two species, and Rostroraja, one species), and Anacanthobatini (Anacanthobatis, two species, and Cruriraja, three species) predominate, while Gurgesiellini has a species of Neoraja and possibly two of Malacoraja.     

Variation in monthly sizes of home-ranges of Hooded Vultures Necrosyrtes monachus in western,eastern and southern Africa

Tracking studies are often used to inform conservation plans and actions. However, species have frequently only been tracked in one or a few localities, whereas space use can be remarkably flexible, especially in long-lived species with advanced learning abilities. We assessed variability in space use in the Critically Endangered Hooded Vulture Necrosyrtes monachus by pooling movement data from three populations across the species’ sub-Saharan range (in South Africa, Botswana, Ethiopia, Kenya, The Gambia and Mozambique). We estimated minimum convex polygons and kernel density estimators (KDEs) and compared monthly home-range sizes between breeding and non-breeding seasons, age-classes and subspecies, accounting for uneven sampling within groups. Mean (± sd) monthly home-range sizes (95% KDEs) for adult Hooded Vultures from southern (12 453 ± 21 188 km², n = 82) and eastern Africa (3735 ± 3652 km², n = 24) were 103 and 31 times larger than those of conspecifics from western Africa (121 ± 98 km², n = 48). This may relate partly to subspecific differences, and individuals with small home-ranges in western Africa and Ethiopia were trapped in urban environments. Regional variation in space use by Hooded Vultures may be linked to flexibility in feeding behaviour (degree of commensalism) which may arise in response to resource availability and persecution in different areas. Age-class also affected monthly home-range sizes, with immature birds generally having larger monthly home-range size estimates than adults. Our results highlight the flexibility of Hooded Vultures in terms of their home-range sizes and suggest that home-range sizes differ between populations and individuals, depending on the extent of human commensalism. Our results also reaffirm the importance of international co-operation in conservation efforts aimed at protecting this wide-ranging, non-migratory species.     

Taxonomic notes on the genus Otoptera (Phaseoleae, Fabaceae) in southern Africa

A taxonomic study of the genus Otoptera (tribe Phaseoleae) is presented. This distinct genus consists of two species, O. burchellii in southern Africa (Namibia, Botswana, South Africa and Zimbabwe) and O. madagascariensis endemic to Madagascar. The two species differ in the shape and size of leaflets, size and orientation of the spur located at the base of the wing petal, and also by size of the pod. A key to the two species is provided. This study focuses mainly on the southern African O. burchellii DC., which is described and illustrated. The species name is lectotypified and the known geographical distribution is recorded for the first time.     

DISTRIBUTION,POPULATION SIZE AND CONSERVATION OF THE CASPIAN TERN STERNA CASPIA IN SOUTHERN AFRICA

Cooper, J., Brooke, R.K., Cyrus, D.P., Martin, A.P., Taylor, R.H. & Williams, A.J. 1992. Distribution, population size and conservation of the Caspian Tern Sterna caspia in southern Africa. Ostrich 63: 58–67.

The Caspian Tern Sterna caspia occurs along the whole southern African coastline and on large river systems and water bodies away from the coast. A total of 28 definite breeding localities has been recorded in southern Africa. Breeding has occurred recently at at least 14 coastal localities between Swakopmund, Namibia, and Lake St Lucia, Natal, South Africa. Inland breeding has been recorded in recent years at Sua Pan, Botswana and Kalkfonteindam, Orange Free State, South Africa. Based on censuses conducted between 1980 and 1991, the southern African breeding population is estimated to be of the order of 500 pairs, 91% of which breed coastally and 89% breed on islands. Up to 290 pairs (58%) bred at Lake St Lucia. Seventyone per cent of the 1980–1991 breeding population falls within eight nature reserves. Conservation of the Caspian Tern in southern Africa requires protection at breeding localities, including commercial salt and soda ash extraction works, against the effects of changing water levels, human disturbance and predation. Pesticide levels of addled and abandoned eggs should be measured at selected breeding localities.     

Tropodiaptomus zambeziensis,T. bhangazii and T. capriviensis,three new species of Tropodiaptomus (Copepods,Calanoida) from southern Africa

Three new species of Tropodiaptomus from southern Africa are described, Tropodiaptomus zambeziensis, T. bhangazii, and T. capriviensis. Type localities are a rice paddy on the Zambezi river delta, a coastal lake in Zululand, and temporary pools in Bushmanland and the eastern Caprivi in Namibia. Speciation of Tropodiaptomus in the warm inland waters of southern Africa is much more extensive than was formerly realised.     

Phylogeny and biogeography of southern African spoon-winged lacewings (Neuroptera: Nemopteridae: Nemopterinae)

Nemopteridae are a charismatic family of lacewings characterised by uniquely extended hind wings. They are an ancient widespread group in the drier regions of the world. The family comprises two subfamilies, Crocinae (thread-wings) and Nemopterinae (spoon- and ribbon-wings). The present distribution of the family has been largely influenced by the vicariant events of plate tectonics, resulting in relict populations in some parts of the world and extensive evolutionary radiations in others, particularly southern Africa where the vast majority of the species are endemic to the Western and Northern Cape Provinces of South Africa. This study aimed to establish the validity of the 11 currently recognised genera and infer their biogeographic history using molecular sequence data from four gene regions. The hypothesis that the Cape nemopterines co-evolved with certain taxa in the Cape Floristic Region was also tested. Phylogenetic analysis supports seven of the 11 currently recognised genera. The crown age of the Nemopterinae is estimated to be at ca. 145.6 Mya, indicating that the group has been present since the late Jurassic. Most of the genera appear to have diversified during the middle Eocene and into the middle Miocene (ca. 44–11 Mya) with recent rapid radiation of several of the genera occurring during the late Miocene (ca. 6–4.5 Mya). While these data support an initial radiation with the Rushioideae (Aizoaceae) it is recommended that further study including observations and gut content be carried out.     

Distribution of South African C3 and C4 species of Cyperaceae in relation to climate and phylogeny

Abstract In this study the contribution of climatic factors and phylogenetic relationships affecting the geographical distribution of C₃ and C₄ genera of the Cyperaceae in South Africa was investigated. The δ¹³C values of herbarium specimens of 68 southern African species from 22 genera and eight tribes were used to assign the species to either the C₃ or C₄ photosynthetic pathway. Geographical distribution data for the Cyperaceae were used to investigate relationships between climatic factors and the number of species and proportional abundance of C₄ species per region. The number of Cyperaceae species per 2° × 2° square across South Africa varied from less than five in the north‐western regions to more than 15 in the south‐western and north‐eastern regions of South Africa where rainfall exceeds 800 mm y^‐1. Of the 68 species investigated, 28 had C₄ photosynthesis and these were scattered among nine genera of four tribes (Cypereae, Scirpeae, Abildgaardieae and Rhyncosporeae). The proportional abundance of C₄ species ranged from 14% in the winter rainfall regions of the south‐west of South Africa to 67% in the summer rainfall areas of the north‐east. The geographical distribution of species was related to their phylogenetic position such that the distributions of C₃ and C₄ species in Cypereae, Scirpeae and Schoeneae was quite distinct. Linear regression analysis showed that the transition temperatures (equal C₃ and C₄ species numbers) for the Cyperaceae were different to those obtained for the Poaceae from the same region. No strong relationships were found between the proportional abundance of C₄ species and other climate factors such as altitude and rainfall. Our analysis of the current geographical distribution of C₄ Cyperaceae in southern Africa in a phylogenetic context suggests that the ecological advantages conferred by the C₄ pathway differ amongst the different plant groups.     

A phylogeographic investigation of the kelp genus Laminaria (Laminariales,Phaeophyceae), with emphasis on the South Atlantic Ocean

The genus Laminaria has a wide distribution range compared with other kelp genera because it is found in both the North and the South Atlantic, on both sides of the North Pacific, as well as in the Mediterranean. Hypotheses behind this biogeographical pattern have been discussed by several authors but have not yet been fully evaluated with time‐calibrated phylogenies. Based on the analysis of four molecular markers (ITS2, rbcL, atp8 and trnWI), our goal was to reassess the Laminaria species diversity in South Africa, assess its relationship with the other species distributed in the South Atlantic and reconstruct the historical biogeography of the genus. Our results confirm the occurrence of a single species, L. pallida, in southern Africa, and its sister relationship with the North Atlantic L. ochroleuca. Both species belonged to a clade containing the other South Atlantic species: L. abyssalis from Brazil, and the Mediterranean L. rodriguezii. Our time‐calibrated phylogenies suggest that Laminaria originated in the northern Pacific around 25 mya, followed by at least two migration events through the Bering Strait after its opening (~5.32 mya). Today, the first is represented by L. solidungula in the Arctic, while the second gave rise to the rest of the Atlantic species. The colonization of the North Atlantic was followed by a gradual colonization southward along the west coast of Europe, into the Mediterranean (~2.07 mya) and two recent, but disconnected, migrations (~1.34 and 0.87 mya) across the equator, giving rise to L. abyssalis in Brazil and L. pallida in southern Africa, respectively.     

Molecular genetic variation across the southern and eastern geographic ranges of the African lion, <Emphasis Type="Italic">Panthera leo</Emphasis>

We examined sequence variation in the mitochondrial cytochrome b and NADH dehydrogenase subunit 5 genes (2,360 bp total) for 26 lions from eleven locations throughout sub-Saharan Africa. Six distinct haplotypes were observed in the combined sequences, forming two clades: the eastern and the western savannas. The Uganda-Western Kenya haplotype grouped at a basal position with the eastern clade of lions from Tsavo south to the Transvaal and Natal regions. The phylogenetic position of the haplotype from Sabi Sands in the southern part of Kruger National Park remained poorly resolved. The haplotypes found in Namibia and Botswana formed the western clade. The modest genetic variation documented here argues against taxonomic distinctions among living African lions.     

Updated geographic range maps for giraffe,Giraffa spp., throughout sub‐Saharan Africa,and implications of changing distributions for conservation

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New evidence of cryptic speciation in the family Longidoridae (Nematoda: Dorylaimida)

Longidorid nematodes comprise more than 500 species, and Longidorus and Xiphinema are the most diversified, prevalent, and cosmopolitan genera within plant-parasitic nematodes. This increases the risk of species misidentification. We conducted an integrative morphometric and genetic study on two longidorid species to elucidate the existence of new cases of cryptic speciation within the genera Longidorus and Xiphinema. Detailed morphological, morphometrical, multivariate, and genetic studies were carried out, and mitochondrial and nuclear haploweb analyses were used to differentiate species within the L. iliturgiensis and X. hispanum complexes. Species delimitation using multivariate and haplonet tools of L. iliturgiensis species complex clearly separated L. tabernensis sp. nov. from L. iliturgiensis and L. indalus, and X. subbaetense sp. nov. from X. hispanum and X. adenohystherum. D2-D3, partial 18S, and partial coxI regions were used for inferring their phylogenetic relationships with other species in each genus. The present study provides new insights into the diversity of Longidorus and Xiphinema species detected in southern Spain, and new evidence of cryptic speciation in both genera. These results support our hypothesis that the biodiversity of Longidoridae in southern Europe is higher than previously supposed and is still not fully clarified.     

MANAGEMENT,CONSERVATION AND RESEARCH OF INTERNATIONALLY SHARED WATERCOURSES IN SOUTIIERN AFRICA—NAMIBIAN EXPERIENCE WITH THE OKAVANGO RIVER AND RIVERS OF THE EASTERN CAPRIVI

Summary

Although the emphasis of the recent National Rivers Research Initiative (now the Research Programme for the Management of Rivers) in South Africa was on river research in that country, the reality is that in southern Africa many watercourses are shared by more than one country. Therefore a central issue in integrated river basin management and development should be the recognition of the principle of international joint planning, conservation, monitoring and research.

Co-operation and a better understanding of shared waters would prevent deleterious impacts, not only in the country where they occur, but also in those downstream. With this in mind, since the early 1980s Namibia has worked on joint cross-border projects in efforts to manage and conserve her shared water bodies. These include joint river gauging exercises, biological control of Saivinia molesta in the eastern Caprivi region and, more recently, the application of a biological monitoring technique, the South African Scoring System version 4, to north-eastern perennial rivers.

The formation of the Joint Permanent Water Commission between Botswana and Namibia enabled the Departments of Water Affairs of both countries to work together on their shared rivers. The establishment of the Permanent Okavango River Basin Water Commission between Angola, Botswana and Namibia in 1994 improved this co-operation even further. Namibia and its' counterparts are thus committed to sharing information, co-ordinating research and monitoring activities and to undertaking detailed studies to improve their knowledge of these shared systems.

Such cross-border co-operation is vital for the survival of shared river systems not only as ecological entities in their own right, but also as sources of water, power and the other resources they provide, both directly and indirectly, to the human and wildlife populations that they support.     

<Emphasis Type="Italic">Catabrosa</Emphasis> versus <Emphasis Type="Italic">Colpodium</Emphasis> (Poaceae: Poeae) in southern Africa,with a key to these genera and their species in Africa

Differences between the genera Colpodium Trin. and Catabrosa P. Beauv. are discussed. Colpodium drakensbergense Hedberg & I. Hedberg is transferred to Catabrosa drakensbergense (Hedberg & I. Hedberg) Soreng & Fish and a lectotype is chosen for the species. This leaves only two Colpodium species in Africa (Ethiopia, Kenya and Tanzania), and extends the range of Catabrosa from northwestern Africa to southern Africa.     

The antiquity of Madagascar’s grasslands and the rise of C4 grassy biomes

Aim Grasslands and savannas, which make up > 75% of Madagascar’s land area, have long been viewed as anthropogenically derived after people settled on the island c. 2 ka. We investigated this hypothesis and an alternative – that the grasslands are an insular example of the post‐Miocene spread of C₄ grassy biomes world‐wide. Location Madagascar, southern Africa, East Africa. Methods We compared the number of C₄ grass genera in Madagascar with that in southern and south‐central African floras. If the grasslands are recent we would expect to find fewer species and genera in Madagascar relative to Africa and for these species and genera to have very wide distribution ranges in Madagascar. Secondly, we searched Madagascan floras for the presence of endemic plant species or genera restricted to grasslands. We also searched for evidence of a grassland specialist fauna with species endemic to Madagascar. Plant and animal species endemic to C₄ grassy biomes would not be expected if these are of recent origin. Results Madagascar has c. 88 C₄ grass genera, including six endemic genera. Excluding African genera with only one or two species, Madagascar has 86.6% of southern Africa’s and 89.4% of south‐central Africa’s grass genera. C₄ grass species make up c. 4% of the flora of both Madagascar and southern Africa and species : genus ratios are similar (4.3 and 5.1, respectively). Turnover of grasses along geographical gradients follows similar patterns to those in South Africa, with Andropogoneae dominating in mesic biomes and Chlorideae in semi‐arid grassy biomes. At least 16 monocot genera have grassland members, many of which are endemic to Madagascar. Woody species in frequently burnt savannas include both Madagascan endemics and African species. A different woody flora, mostly endemic, occurs in less frequently burnt grasslands in the central highlands, filling a similar successional niche to montane C₄ grasslands in Africa. Diverse vertebrate and invertebrate lineages have grassland specialists, including many endemic to Madagascar (e.g. termites, ants, lizards, snakes, birds and mammals). Grassland use of the extinct fauna is poorly known but carbon isotope analysis indicates that a hippo, two giant tortoises and one extinct lemur ate C₄ or CAM (crassulacean acid metabolism) plants. Main conclusions The diversity of C₄ grass lineages in Madagascar relative to that in Africa, and the presence of plant and animal species endemic to Madagascan grassy biomes, does not fit the view that these grasslands are anthropogenically derived. We suggest that grasslands invaded Madagascar after the late Miocene, part of the world‐wide expansion of C₄ grassy biomes. Madagascar provides an interesting test case for biogeographical analysis of how these novel biomes assembled, and the sources of the flora and fauna that now occupy them. A necessary part of such an analysis would be to establish the pre‐settlement extent of the C₄ grassy biomes. Carbon isotope analysis of soil organic matter would be a feasible method for doing this.