A pre‐Miocene Irano‐Turanian cradle: Origin and diversification of the species‐rich monocot genus Gagea (Liliaceae)

The Irano‐Turanian (IT) floristic region is considered an important center of origin for many taxa. However, there is a lack of studies dealing with typical IT genera that also occur in neighboring areas. The species‐rich monocot genus Gagea Salisb. shows a center of diversity in IT region and a distribution in adjacent regions, therefore representing a good study object to investigate spatial and temporal relationships among IT region and its neighboring areas (East Asia, Euro‐Siberia, Himalaya, and Mediterranean). We aimed at (a) testing the origin of the genus and of its major lineages in the IT region, (b) reconstructing divergence times, and (c) reconstructing colonization events. To address these problems, sequences of the ribosomal DNA internal transcribed spacer (ITS) region of 418 individuals and chloroplast intergenic spacers sequences (psbA‐trnH, trnL‐trnF) of 497 individuals, representing 116 species from all sections of the genus and nearly its entire distribution area were analyzed. Divergence times were estimated under a random molecular clock based on nrITS phylogeny, which was the most complete data set regarding the representation of species and distribution areas. Ancestral distribution ranges were estimated for the nrITS data set as well as for a combined data set, revealing that Gagea most likely originated in southwestern Asia. This genus first diversified there starting in the Early Miocene. In the Middle Miocene, Gagea migrated to the Mediterranean and to East Asia, while migration into Euro‐Siberia took place in the Late Miocene. During the Pleistocene, the Arctic was colonized and Gagea serotina, the most widespread species, reached North America. The Mediterranean basin was colonized multiple times from southwestern Asia or Euro‐Siberia. Most of the currently existing species originated during the last 3 Ma.     

Spatiotemporal maintenance of flora in the Himalaya biodiversity hotspot: Current knowledge and future perspectives

Mountain ecosystems support a significant one‐third of all terrestrial biodiversity, but our understanding of the spatiotemporal maintenance of this high biodiversity remains poor, or at best controversial. The Himalaya hosts a complex mountain ecosystem with high topographic and climatic heterogeneity and harbors one of the world''s richest floras. The high species endemism, together with increasing anthropogenic threats, has qualified the Himalaya as one of the most significant global biodiversity hotspots. The topographic and climatic complexity of the Himalaya makes it an ideal natural laboratory for studying the mechanisms of floral exchange, diversification, and spatiotemporal distributions. Here, we review literature pertaining to the Himalaya in order to generate a concise synthesis of the origin, distribution, and climate change responses of the Himalayan flora. We found that the Himalaya supports a rich biodiversity and that the Hengduan Mountains supplied the majority of the Himalayan floral elements, which subsequently diversified from the late Miocene onward, to create today''s relatively high endemicity in the Himalaya. Further, we uncover links between this Miocene diversification and the joint effect of geological and climatic upheavals in the Himalaya. There is marked variance regarding species dispersal, elevational gradients, and impact of climate change among plant species in the Himalaya, and our review highlights some of the general trends and recent advances on these aspects. Finally, we provide some recommendations for conservation planning and future research. Our work could be useful in guiding future research in this important ecosystem and will also provide new insights into the maintenance mechanisms underpinning other mountain systems.     

Temperature dependence of evolutionary diversification: differences between two contrasting model taxa support the metabolic theory of ecology

Biodiversity patterns are largely determined by variation of diversification rates across clades and geographic regions. Although there are multiple reasons for this variation, it has been hypothesized that metabolic rate is the crucial driver of diversification of evolutionary lineages. According to the metabolic theory of ecology (MTE), metabolic rate – and consequently speciation – is driven mainly by body size and environmental temperature. As environmental temperature affects metabolic rate in ecto‐ and endotherms differently, its impact on diversification rate should also differ between the two types of organisms. Employing two independent approaches, we analysed correlates of speciation rates and, ultimately, net diversification rates for two contrasting taxa: plethodontid salamanders and carnivoran mammals. Whereas in the ectothermic plethodontids speciation rates positively correlated with environmental temperature, in the endothermic carnivorans a reverse, negative correlation was detected. These findings comply with predictions of the MTE and suggest that similar geographic patterns of biodiversity across taxa (e.g. ecto‐ and endotherms) might have been generated by different ecological and evolutionary processes.     

Mosaics in the mangroves: allopatric diversification of tree‐climbing mudwhelks (Gastropoda: Potamididae: Cerithidea) in the Indo‐West Pacific

The Indo‐Australian Archipelago (IAA) is the richest area of biodiversity in the marine realm, yet the processes that generate and maintain this diversity are poorly understood and have hardly been studied in the mangrove biotope. Cerithidea is a genus of marine and brackish‐water snails restricted to mangrove habitats in the Indo‐West Pacific, and its species are believed to have a short pelagic larval life. Using molecular and morphological techniques, we demonstrate the existence of 15 species, reconstruct their phylogeny and plot their geographical ranges. Sister species show a pattern of narrowly allopatric ranges across the IAA, with overlap only between clades that show evidence of ecological differentiation. These allopatric mosaic distributions suggest that speciation may have been driven by isolation during low sea‐level stands, during episodes preceding the Plio‐Pleistocene glaciations. The Makassar Strait forms a biogeographical barrier hindering eastward dispersal, corresponding to part of Wallace's Line in the terrestrial realm. Areas of maximum diversity of mangrove plants and their associated molluscs do not coincide closely. © 2013 The Natural History Museum. Biological Journal of the Linnean Society © 2013 The Linnean Society of London, 2013, 110 , 564–580.     

Equilibrium and non‐equilibrium phases in the radiation of Hakea and the drivers of diversity in Mediterranean‐type ecosystems

Mediterranean‐type ecosystems (MTEs) contain exceptional plant diversity. Explanations for this diversity are usually classed as either “equilibrium,” with elevated MTE diversity resulting from greater ecological carrying capacities, or “non‐equilibrium,” with MTEs having a greater accumulation of diversity over time than other types of ecosystems. These models have typically been considered as mutually exclusive. Here, we present a trait‐based explanatory framework that incorporates both equilibrium and non‐equilibrium dynamics. Using a large continental Australian plant radiation (Hakea) as a case study, we identify traits associated with niche partitioning in coexisting species (α‐traits) and with environmental filtering (β‐traits), and reconstruct the mode and relative timing of diversification of these traits. Our results point to a radiation with an early non‐equilibrium phase marked by divergence of β‐traits as Hakea diversified exponentially and expanded from the southwest Australian MTE into biomes across the Australian continent. This was followed from seven million years ago by an equilibrium phase, marked by diversification of α‐traits and a slowdown in lineage diversification as MTE‐niches became saturated. These results suggest that processes consistent with both equilibrium and non‐equilibrium models have been important during different stages of the radiation of Hakea, and together they provide a richer explanation of present‐day diversity patterns.     

Climate‐associated population declines reverse recovery and threaten future of an iconic high‐elevation plant

Although climate change is predicted to place mountain‐top and other narrowly endemic species at severe risk of extinction, the ecological processes involved in such extinctions are still poorly resolved. In addition, much of this biodiversity loss will likely go unobserved, and therefore largely unappreciated. The Haleakalā silversword is restricted to a single volcano summit in Hawai‘i, but is a highly charismatic giant rosette plant that is viewed by 1–2 million visitors annually. We link detailed local climate data to a lengthy demographic record, and combine both with a population‐wide assessment of recent plant mortality and recruitment, to show that after decades of strong recovery following successful management, this iconic species has entered a period of substantial climate‐associated decline. Mortality has been highest at the lower end of the distributional range, where most silverswords occur, and the strong association of annual population growth rates with patterns of precipitation suggests an increasing frequency of lethal water stress. Local climate data confirm trends toward warmer and drier conditions on the mountain, and signify a bleak outlook for silverswords if these trends continue. The silversword example foreshadows trouble for diversity in other biological hotspots, and illustrates how even well‐protected and relatively abundant species may succumb to climate‐induced stresses.     

Critical events in the evolutionary history of calcareous Nannoplankton

Calcareous nannofossil diversity, and rates of speciation and extinction are calculated for five million year intervals from their first appearance in the Late Triassic through to the Present Day. Important evolutionary events are as follows: first appearance in the Late Triassic, Triassic‐Jurassic boundary extinctions, Tithonian radiation (and the first occurrence of nannofossil carbonates), Late Cretaceous diversity maximum, Cretaceous‐Tertiary boundary extinctions, Palaeocene radiation, mid Eocene to Oligocene diversity decline, and early Miocene diversity rise. These events are related to possible causal factors of which climate appears to be the most fundamental. Other factors may include biogeographical isolation, sea level change, and the configuration of Mesozoic oceans.     

Ashes to ashes: Intense fires extinguish populations of urban short‐range endemics

Native bushland fragmented by urbanization often experiences increased cover of flammable weeds, reduced biomass turnover and an absence of fuel management combined with increased ignitions. Depending on species’ mobility and dispersal traits, and the extent of burns within urban remnants, such fires may reduce individual survival rates or limit natural recolonization. We monitored the survival of mygalomorph spiders for a year following high‐intensity and low‐intensity fires in Banksia woodland remnants in urban Perth. Of the 257 burrows found, 115 spiders were confirmed to initially survive after intense wildfire, but none were confirmed alive after 12 months. In sharp contrast, only one spider from 103 observed burrows was confirmed dead after a low‐intensity prescribed fire. As there were instances of our monitored mygalomorphs relocating a short distance following only low intensity fires, we also tested whether predation rates were higher in burnt than unburnt areas. Higher rates of predation were found in burnt areas, but this was strongly influenced by both site and predator type. We recommend further consideration of low‐intensity prescribed fire as well as alternative fuel management approaches in urban remnants to better conserve mygalomorph spider populations and other taxa with limited dispersal and/or mobility capabilities.     

Parallel evolution of an alpine type ecomorph in a scorpionfly: Independent adaptation to high‐altitude environments in multiple mountain locations

Elucidation of the diversification process of organisms is one of the important tasks of biology. From the viewpoint of species diversity, insects are the most successful group among the diverse organisms on earth and evolutionary adaptation is one of the important factors driving this pattern. Evolutionary adaptation is one of the important factors in the diversification of insects. One of the representative examples of environmental adaptation in insects is the shortening and loss of wings in subalpine and alpine zones. In this study, we focused on the Japanese scorpionfly, Panorpodes paradoxus. In this species, individuals that inhabit mountainous regions and subalpine zones have long wings (the “general type”), and individuals that inhabit higher altitudinal ranges have short wings (the “alpine type”). We collected samples of all Japanese Panorpodes species and one Korean Panorpodes species, and conducted molecular phylogenetic analyses of the mtDNA COI (610 bp), COII (688 bp), and 16S rRNA (888 bp) and nuDNA EF1‐α (658 bp) and 28S rRNA (524 bp) regions in order to reveal the evolutionary history of the alpine type of P. paradoxus. As a result of molecular phylogenetic analyses, it was revealed that the alpine type of P. paradoxus was polyphyletic, and had evolved to become the alpine type at least twice independently at separate mountain locations. In addition, the result of divergence time estimation suggested that the alpine type is an “ecomorph”, having recently adapted to low temperature habitats following mountain uplift within the Japanese Archipelago and subsequent glacial‐interglacial cycles.     

Changes in satellite‐derived vegetation growth trend in temperate and boreal Eurasia from 1982 to 2006

Monitoring changes in vegetation growth has been the subject of considerable research during the past several decades, because of the important role of vegetation in regulating the terrestrial carbon cycle and the climate system. In this study, we combined datasets of satellite‐derived Normalized Difference Vegetation Index (NDVI) and climatic factors to analyze spatio‐temporal patterns of changes in vegetation growth and their linkage with changes in temperature and precipitation in temperate and boreal regions of Eurasia (> 23.5°N) from 1982 to 2006. At the continental scale, although a statistically significant positive trend of average growing season NDVI is observed (0.5 × 10^?3 year^?1, P = 0.03) during the entire study period, there are two distinct periods with opposite trends in growing season NDVI. Growing season NDVI has first significantly increased from 1982 to 1997 (1.8 × 10^?3 year^?1, P < 0.001), and then decreased from 1997 to 2006 (?1.3 × 10^?3 year^?1, P = 0.055). This reversal in the growing season NDVI trends over Eurasia are largely contributed by spring and summer NDVI changes. Both spring and summer NDVI significantly increased from 1982 to 1997 (2.1 × 10^?3 year^?1, P = 0.01; 1.6 × 10^?3 year^?1P < 0.001, respectively), but then decreased from 1997 to 2006, particularly summer NDVI which may be related to the remarkable decrease in summer precipitation (?2.7 mm yr^?1, P = 0.009). Further spatial analyses supports the idea that the vegetation greening trend in spring and summer that occurred during the earlier study period 1982–1997 was either stalled or reversed during the following study period 1997–2006. But the turning point of vegetation NDVI is found to vary across different regions.     

Functional evolutionary developmental biology (evo‐devo) of morphological novelties in plants

Abstract The origin of morphological and ecological novelties is a long‐standing problem in evolutionary biology. Understanding these processes requires investigation from both the development and evolution standpoints, which promotes a new research field called “evolutionary developmental biology” (evo‐devo). The fundamental mechanism for the origin of a novel structure may involve heterotopy, heterochrony, ectopic expression, or loss of an existing regulatory factor. Accordingly, the morphological and ecological traits controlled by the regulatory genes may be gained, lost, or regained during evolution. Floral morphological novelties, for example, include homeotic alterations (related to organ identity), symmetric diversity, and changes in the size and morphology of the floral organs. These gains and losses can potentially arise through modification of the existing regulatory networks. Here, we review current knowledge concerning the origin of novel floral structures, such as “evolutionary homeotic mutated flowers”, floral symmetry in various plant species, and inflated calyx syndrome (ICS) within Solanaceae. Functional evo‐devo of the morphological novelties is a central theme of plant evolutionary biology. In addition, the discussion is extended to consider agronomic or domestication‐related traits, including the type, size, and morphology of fruits (berries), within Solanaceae.     

Integrated landscape approaches to managing social and environmental issues in the tropics: learning from the past to guide the future

Poverty, food insecurity, climate change and biodiversity loss continue to persist as the primary environmental and social challenges faced by the global community. As such, there is a growing acknowledgement that conventional sectorial approaches to addressing often inter‐connected social, environmental, economic and political challenges are proving insufficient. An alternative is to focus on integrated solutions at landscape scales or ‘landscape approaches’. The appeal of landscape approaches has resulted in the production of a significant body of literature in recent decades, yet confusion over terminology, application and utility persists. Focusing on the tropics, we systematically reviewed the literature to: (i) disentangle the historical development and theory behind the framework of the landscape approach and how it has progressed into its current iteration, (ii) establish lessons learned from previous land management strategies, (iii) determine the barriers that currently restrict implementation of the landscape approach and (iv) provide recommendations for how the landscape approach can contribute towards the fulfilment of the goals of international policy processes. This review suggests that, despite some barriers to implementation, a landscape approach has considerable potential to meet social and environmental objectives at local scales while aiding national commitments to addressing ongoing global challenges.     

Assessing the causes of diversification slowdowns: temperature‐dependent and diversity‐dependent models receive equivalent support

Diversification rates vary over time, yet the factors driving these variations remain unclear. Temporal declines in speciation rates have often been interpreted as the effect of ecological limits, competition, and diversity dependence, emphasising the role of biotic factors. Abiotic factors, such as climate change, are also supposed to have affected diversification rates over geological time scales, yet direct tests of these presumed effects have mainly been limited to few clades well represented in the fossil record. If warmer climatic periods have sustained faster speciation, this could explain slowdowns in speciation during the Cenozoic climate cooling. Here, we apply state‐of‐the art diversity‐dependent and temperature‐dependent phylogenetic models of diversification to 218 tetrapod families, along with constant rate and time‐dependent models. We confirm the prevalence of diversification slowdowns, and find as much support for temperature‐dependent than diversity‐dependent models. These results call for a better integration of these two processes in studies of diversification dynamics.