Recovery of the seagrass <Emphasis Type="Italic">Zostera marina</Emphasis> in a disturbed Mediterranean lagoon (Etang de Berre,Bouches-du-Rhône,Southern France)

Until 1966, Berre lagoon (Provence, southern France) was a salty lagoon with a highly diversified marine fauna and flora. Increased inputs of freshwater from a hydroelectric plant led to the desalination and stratification of the lagoon. Following these changes, a wide diversity of species disappeared, including the eelgrass Zostera marina, a keystone species which previously constituted extensive meadows in the lagoon. After almost three decades of absence, patches of eelgrass were observed in 2001 and 2002 but the success of future recolonization by this community is uncertain.     

Forecasting Physicochemical Variables by a Classification Tree Method. Application to the Berre Lagoon (South France)

The dynamics of the "Etang de Berre", a brackish lagoon situated close to the French Mediterranean sea coast, is strongly disturbed by freshwater inputs coming from an hydroelectric power station. The system dynamics has been described as a sequence of daily typical states from a set of physicochemical variables such as temperature, salinity and dissolved oxygen rates collected over three years by an automatic sampling station. Each daily pattern summarizes the evolution, hour by hour of the physicochemical variables. This article presents results of forecasts of the states of the system subjected to the simultaneous effects of meteorological conditions and freshwater releases. We recall the main step of the classification tree method used to build up the predictive model (Classification and Regression Trees, Breiman et al., 1984) and we propose a transfer procedure in order to test the stability of the model. Results obtained on the Etang de Berre data set allow us to describe and predict the effects of the environmental variables on the system dynamics with a margin of error. The transfer procedure applied after the tree building process gives a maximum gain in prediction accuracy of about 15%.     

Growth and symbiotic effectiveness of an arbuscular mycorrhizal fungus in organic matter in competition with soil bacteria

Shallow coastal waters, where phototrophic purple sulfur bacteria (PSB) regularly form massive blooms, are subjected to massive diurnal and event-driven changes of physicochemical conditions including temperature and salinity. To analyze the ability of PSB to cope with these environmental factors and to compete in complex communities we have studied changes of the environmental community of PSB of a Baltic Sea lagoon under experimental enrichment conditions with controlled variation of temperature and NaCl concentration. For the first time, changes within a community of PSB were specifically analyzed using the photosynthetic reaction center genes pufL and M by RFLP and cloning experiments. The most abundant PSB phylotypes in the habitat were found along the NaCl gradient from freshwater conditions up to 7.5% NaCl. They were accompanied by smaller numbers of purple nonsulfur bacteria and aerobic anoxygenic phototrophic bacteria. Major components of the PSB community of the brackish lagoon were affiliated to PSB genera and species known as marine, halophilic or salt-tolerant, including species of M arichromatium, H alochromatium, T hiorhodococcus, A llochromatium, T hiocapsa, T hiorhodovibrio, and T hiohalocapsa. A dramatic shift occurred at elevated temperatures of 41 and 44°C when M arichromatium gracile became most prominent which was not detected at lower temperatures.     

Impact of wind and freshwater inputs on phytoplankton biomass in the coral reef lagoon of New Caledonia during the summer cyclonic period: a coupled three-dimensional biogeochemical modeling approach

A coupled three-dimensional physical-biological model was developed in order to simulate the ecological functioning and potential impacts of land-derived inputs in the southwest lagoon of New Caledonia. This model considered pelagic biogeochemical cycling of organic matter, taking into account advection and diffusion processes driven mainly by local wind fields and freshwater discharges. Modeled phytoplankton dynamics were strongly correlated with both freshwater nutrient inputs and wind-driven hydrodynamic processes, the latter resulting in a large input of oceanic water from the southeast part of the lagoon under trade wind conditions. In situ data obtained during the summer (January 1998) under trade wind conditions supported predicted concentration gradients along several coast to reef transects and provided a validation of the coupled physical-biogeochemical model. An additional sensitivity analysis showed that the alteration of the biogeochemical parameters did not strongly affect the results of the model. Freshwater inputs of nutrients were simulated using a realistic scenario corresponding to the summer rainy season of 1997–1998 in New Caledonia. Despite occasional flooding events from the main rivers considered in these simulations, no significant meso-scale phytoplankton bloom was identified. Hydrodynamically driven dispersion and rapid uptake of nutrients by phytoplankton were sufficient to spatially constrain the impact of river inputs and maintain oligotrophic conditions. The fine spatial grid of our three-dimensional model demonstrated that eutrophication in the southwest lagoon of New Caledonia is confined to the most restricted coastal embayments, while most of the lagoon experiences sustained oligotrophic conditions.     

Temporal and spatial patterns of crustacean zooplankton dynamics in a transitional lagoon ecosystem

Patterns and mechanisms of plankton crustacean seasonal succession in the eutrophic freshwater Curonian lagoon (south-eastern Baltic Sea) were analysed on the basis of four-year (1995, 1996, 1998 and 1999) field sampling results. The seasonal crustacean zooplankton succession in the lagoon appears to be the consistent six-stage sequence of four distinct species complexes. Each stage is characterised by its individual species composition and quantitative characteristics. The uniform and periodic pattern of the limnetic zooplankton crustacean successional stages in the lagoon indicates that the seasonal succession of the limnetic zooplankton is not disturbed by unpredictable environmental fluctuations, such as brackish water inflows. Seasonal zooplankton succession is also comparatively uniform at a spatial scale. Not more than two adjacent successional stages were found across the northern part of the lagoon during each of 11 seasonal surveys. Comparison between monthly water residence time and dominant plankton crustacean species life cycle duration points to a more transitory plankton community in spring while in the summer it is not much influenced by lagoon hydrodynamics. Consequently, the Curonian lagoon crustacean community quite closely follows the Plankton Ecology Group (PEG)-described freshwater lake seasonal succession in summer and turns into a lentic-like system in spring and autumn.     

Subtroprical wetland fish assemblages and changing salinity regimes: Implications for everglades restoration

During the 1960s, water management practices resulted in the conversion of the wetlands that fringe northeastern Florida Bay (USA) from freshwater/oligohaline herbaceous marshes to dwarf red mangrove forests. Coincident with this conversion were several ecological changes to Florida Bay’s fauna, including reductions in the abundances of top trophic-level consumers: piscivorous fishes, alligators, crocodiles, and wading birds. Because these taxa rely on a common forage base of small demersal fishes, food stress has been implicated as playing a role in their respective declines. In the present study, we monitored the demersal fishes seasonally at six sites over an 8-year time period. During monitoring, extremely high rainfall conditions occurred over a 3.5-year period leading to salinity regimes that can be viewed as “windows” to the area’s natural past and future restored states. In this paper, we: (1) examine the changes in fish communities over the 8-year study period and relate them to measured changes in salinity; (2) make comparisons among marine, brackish and freshwater demersal fish communities in terms of species composition, density, and biomass; and (3) discuss several implications of our findings in light of the intended and unintended water management changes that are planned or underway as part of Everglades restoration. Results suggest the reduction in freshwater flow to Florida Bay over the last several decades has reduced demersal fish populations, and thus prey availability for apex consumers in the coastal wetlands compared to the pre-drainage inferred standard. Furthermore, greater discharge of freshwater toward Florida Bay may result in the re-establishment of pre-1960s fauna, including a more robust demersal-fish community that should prompt increases in populations of several important predatory species.     

Herpetofaunal communities at Muni Lagoon in Ghana

A herpetofaunal survey of Muni-Pomadze Lagoon, during the main rainy season (May–June), recorded a total of 32 species (13 amphibians and 19 reptiles). Three species are the first records for coastal habitats in Ghana: Kinixys homeana, Calabaria reinhardti, and Bothrophthalmus lineatus. None of the surveyed species are restricted to Ghana. The most diverse herpetofaunal community occurs in grassland thicket, with 26 species (81% of the sampled herpetofauna). Freshwater ponds include 12 species, while only three species (all amphibians) occur in brackish lagoons. Herpetofaunal conservation efforts at these sites should focus on protecting and monitoring grassland coastal thicket and freshwater ponds. Currently, freshwater pond habitats appear to be stable, but coastal thicket is being lost to provide new agricultural land at Muni. Hyperolius reedfrogs, pythons (Python regius) and monitor lizards (Varanus exanthematicus and V. niloticus) appear to offer the greatest potential for undertaking long-term monitoring of the coastal lagoon herpetofauna, because they can be more readily surveyed, and are likely to be sensitive to a broad range of environmental stressors.     

Diverse migration strategy between freshwater and seawater habitats in the freshwater eel genus Anguilla

The freshwater eels of the genus Anguilla, which are catadromous, migrate between freshwater growth habitats and offshore spawning areas. A number of recent studies, however, found examples of the temperate species Anguilla anguilla, Anguilla rostrata, Anguilla japonica, Anguilla australis and Anguilla dieffenbachii that have never migrated into fresh water, spending their entire life history in the ocean. Furthermore, those studies found an intermediate type between marine and freshwater residents, which appear to frequently move between different environments during their growth phase. The discovery of marine and brackish-water residents Anguilla spp. suggests that they do not all have to be catadromous, and it calls into question the generalized classification of diadromous fishes. There has been little available information, however, concerning migration in tropical Anguilla spp. Anguilla marmorata, shows three fluctuation patterns: (1) continuous residence in fresh water, (2) continuous residence in brackish water and (3) residence in fresh water after recruitment, while returning to brackish water. Such migratory patterns were found in other tropical species, Anguilla bicolor bicolor and Anguilla bicolor pacifica. In A. b. bicolor collected in a coastal lagoon of Indonesia, two further patterns of habitat use were found: (1) constantly living in either brackish water or sea water with no freshwater life and (2) habitat shift from fresh water to brackish water or sea water. The wide range of environmental habitat use indicates that migratory behaviour of tropical Anguilla spp. is facultative among fresh, brackish and marine waters during their growth phases after recruitment to the coastal areas. Further, the migratory behaviours of tropical Anguilla spp. appear to differ in each habitat in response to inter and intra-specific competition. The results suggest that tropical Anguilla spp. have a flexible pattern of migration, with an ability to adapt to various habitats and salinities. The ability of anguillids to reside in environments of various salinities would be a common feature between tropical and temperate species without a latitudinal cline. Thus, the migration of Anguilla spp. into fresh water is clearly not an obligatory behaviour. This evidence of geographical variability among Anguilla spp. suggests that habitat use is determined by environmental conditions in each site.     

Evolutionary bottlenecks in brackish water habitats drive the colonization of fresh water by stingrays

Species richness in freshwater bony fishes depends on two main processes: the transition into and the diversification within freshwater habitats. In contrast to bony fishes, only few cartilaginous fishes, mostly stingrays (Myliobatoidei), were able to colonize fresh water. Respective transition processes have been mainly assessed from a physiological and morphological perspective, indicating that the freshwater lifestyle is strongly limited by the ability to perform osmoregulatory adaptations. However, the transition history and the effect of physiological constraints on the diversification in stingrays remain poorly understood. Herein, we estimated the geographic pathways of freshwater colonization and inferred the mode of habitat transitions. Further, we assessed habitat‐related speciation rates in a time‐calibrated phylogenetic framework to understand factors driving the transition of stingrays into and the diversification within fresh water. Using South American and Southeast Asian freshwater taxa as model organisms, we found one independent freshwater colonization event by stingrays in South America and at least three in Southeast Asia. We revealed that vicariant processes most likely caused freshwater transition during the time of major marine incursions. The habitat transition rates indicate that brackish water species switch preferably back into marine than forth into freshwater habitats. Moreover, our results showed significantly lower diversification rates in brackish water lineages, whereas freshwater and marine lineages exhibit similar rates. Thus, brackish water habitats may have functioned as evolutionary bottlenecks for the colonization of fresh water by stingrays, probably because of the higher variability of environmental conditions in brackish water.     

La transparence et la charge sestonique de l'Étang de Berre (côte méditerranéenne française)

Water transparency and seston weight were measured in the brackish Etang de Berre and Etang de Vaïne (between the Rhone river and Marseilles), in nearby seawater and in four main tributaries of the Etang de Berre. The large quantities of seston conveyed by rivers, particularly the Durance diversion, strongly reduce the transparency in the brackish waters. The transparency progressively increases from freshwater to open seawater, as mineral particles sink to the bottom (about 1.7 kg m^-2 a^-1 on the average in brackish lakes). Comparatively, the role played by phytoplankton in light attenuation amounts to only 5% in seawater and 10–17% in Etang de Berre. In spite of turbidity, the euphotic layer generally extends to the bottom, in both the shallow brackish waters and in the deeper seawater.     

Marine moult migration of the freshwater Scaly‐sided Merganser Mergus squamatus revealed by stable isotopes and geolocators

Scaly‐sided Mergansers Mergus squamatus breed on freshwater rivers in far eastern Russia, Korea and China, wintering in similar habitats in China and Korea, but nothing was known of their moulting habitat. To investigate the moult strategies of this species, we combined wing feather stable isotope ratios (males and females) with geolocator data (nesting females) to establish major habitat types (freshwater, brackish or saltwater) used by both sexes during wing moult. Although most Scaly‐sided Mergansers of both sexes probably moult on freshwater, some males and non‐breeding and failed breeding females appeared to undertake moult migration to brackish and marine waters. Given the previous lack of any surveys of coastal or estuarine waters for this species during the moult period, these findings suggest important survey needs for the effective conservation of the species during the flightless moult period.     

Fish community response to increased river flow in the Kariega Estuary,a freshwater-deprived,permanently open southern African system

The littoral and demersal ichthyofaunal community structure in the freshwater-deprived, permanently open Kariega Estuary was investigated following heavy rain in November 2006 and was compared to low-flow condition data from 1991 and 1996. All surveys took place during the spring months and allowed for a comparison of a wet and a dry spring period. The 2006 freshwater pulse generated a strong horizontal salinity gradient within the estuary. In the absence of freshwater inflow, the ichthyofaunal community in the littoral zone was numerically dominated by estuarine resident species, whilst after the freshwater pulse an increased contribution of marine migrant species was observed. Within the demersal zone, marine straggler species dominated during the dry spring period and estuarine residents during the wet spring period. Numerical analyses of the littoral and demersal fish assemblages indicated the presence of three distinct groupings — corresponding to the upper and middle reaches during separate wet and dry periods, and a community associated with the lower reaches of the estuary. It is suggested that the shift in community structure between the dry and wet spring periods could be related to altered physico-chemical and trophic conditions within the estuary, as well as the increased presence of freshwater and estuarine olfactory cues within the coastal zone, which would have resulted in the recruitment of 0+ estuary-associated marine species into the Kariega system.     

Allometric relationships in morphological traits associated with foraging,swimming ability,and predator defense reveal adaptations toward brackish and freshwater environments in the threespine stickleback

Freshwater colonization by threespine stickleback has led to divergence in morphology between ancestral marine and derived freshwater populations, making them ideal for studying natural selection on phenotypes. In an open brackish–freshwater system, we previously discovered two genetically distinct stickleback populations that also differ in geometric shape: one mainly found in the brackish water lagoon and one throughout the freshwater system. As shape and size are not perfectly correlated, the aim of this study was to identify the morphological trait(s) that separated the populations in geometric shape. We measured 23 phenotypes likely to be important for foraging, swimming capacity, and defense against predation. The lateral plate morphs in freshwater displayed few significant changes in trait sizes, but the low plated expressed feeding traits more associated with benthic habitats. When comparing the completely plated genetically assigned populations, the freshwater, the hybrids, the migrants and the lagoon fish, many of the linear traits had different slopes and intercepts in trait‐size regressions, precluding our ability to directly compare all traits simultaneously, which most likely results from low variation in body length for the lagoon and migrant population. We found the lagoon stickleback population to be more specialized toward the littoral zone, displaying benthic traits such as large, deep bodies with smaller eyes compared to the freshwater completely plated morph. Further, the lagoon and migrant fish had an overall higher body coverage of lateral plates compared to freshwater fish, and the dorsal and pelvic spines were longer. Evolutionary constraints due to allometric scaling relationships could explain the observed, overall restricted, differences in morphology between the sticklebacks in this study, as most traits have diversified in common allometric trajectories. The observed differences in foraging and antipredation traits between the fish with a lagoon and freshwater genetic signature are likely a result of genetic or plastic adaptations toward brackish and freshwater environments.     

Environmental changes and zooplankton temporal and spatial variation in a disturbed Brazilian coastal lagoon.

The Imboassica lagoon, located in the Municipality of Macaé (RJ), is separated from the sea by a sand bar, and its surroundings are partially occupied by residential areas. This coastal lagoon has undergone environmental degradation due to sewage input and artificial sand bar openings. The temporal and spatial variation of environmental variables and zooplankton were studied monthly for four years. There were five artificial openings of the sand bar during the period of study, mostly in the rainy season. Besides osmotic changes, these events caused the drainage of the water of the lagoon into the sea, loss of total organic nitrogen, and an increase of total phosphorus. The zooplankton community of Imboassica lagoon included freshwater and marine taxa, holoplanktonic, meroplanktonic and nectobenthonic forms. Polychaeta, Bivalvia and Gastropoda larvae, and the taxa of Rotifera Hexarthra spp., Lecane bulla, Synchaeta bicornis, nauplii of Cyclopoida and Calanoida copepods were considered constant taxa. Distinct zooplankton assemblages were found during zooplankton spatial surveys in oligohaline and mesohaline conditions. The successful zooplankton populations were either favored by the disturbance of the sand bar opening, such as the veligers of the gastropod Heleobia australis, or capable of fast recovery after the closing of the sand bar, during the succession from a marine into an oligohaline environment, such as Hexarthra spp.. Such populations seemed well adapted to the stress conditions usually found in the lagoon due to osmotic changes, column mixing, nutrient input, and high fish predation pressure. Rare species in the community, such as Moina minuta, presented population increases all over the lagoon under oligohaline conditions.     

Phytoplankton Fluctuations during an Annual Cycle in the Coastal Lagoon of Cullera (Spain)

The seasonal variation and the vertical distribution of the phytoplanktonic population of the lagoon of Cullera, an elongated coastal lagoon with estuarine circulation of water, has been studied in three sampling stations: mouth, centre and source. Seasonal variation is determined by a marine-freshwater interaction. In winter, the sea influence is important, a marine water wedge of anoxic water arrives at the sampling station located at the source and marine and brackish water species dominate the phytoplankton. Also marine species of zooplankton and fish enter the system, which may then be considered as exploited by the sea. In spring the marine wedge retreats from the source but remains in the centre and mouth, salinity diminishes, vertical mixing persists and phytoplankton is dominated by Cyclotella species. From late spring to autumn the freshwater influence prevails and a sharp stratification of the water is produced in the stations at the mouth and the centre, by means of a steep halocline coincident with an oxycline. The phytoplankton in this period follows a typical succession like those described in freshwater eutrophic lakes. Vertical distribution of phytoplankton is determined by the presence of the oxycline, originated by the marine water wedge, whose depth varies seasonally but which is always present in the mouth and centre of the lagoon; only few species of algae can be found below its level.     

The benthic macrofauna along the estuarine gradient of the Schelde estuary

The intertidal benthic macrofauna of the Schelde estuary (The Netherlands and Belgium) was sampled in late autumn of 1990 at 50 stations along the whole salinity gradient (between Vlissingen and Dendermonde), including the freshwater tidal part. All stations were situated in sheltered areas with a relatively muddy sediment. Species richness, diversity and total biomass of the benthic macrofauna decreased along the salinity gradient from Vlissingen to Dendermonde, while total density showed no clear trend. Especially the oligohaline and freshwater tidal part of the Schelde estuary was characterized by a very impoverished benthic community, composed only of Oligochaeta. No other species (freshwater, marine or brackish) was observed in this part of the estuary. The marine part had a more diverse macrozoobenthos structure than that of the brackish part. Species found only in the marine zone areCerastoderma edule, Tharyx marioni, Eteone longa, Nephtys hombergii andCapitella capitata. In the brackish part of the estuary,Corophium volutator was a typical, dominant species. However, a lot of the dominant species were common in both the marine and brackish part of the Schelde estuary (e.g. Heteromastus filiformis, Pygospio elegans, Nereis diversicolor, Macoma balthica). The observed gradient in species composition and dominance is compared with some other European estuaries. The marine and brackish part of the Schelde estuary is quite similar to other european estuaries. The freshwater tidal part, however, was more impoverished.     

Genetic and morphometric divergence in threespine stickleback in the Chignik catchment,Alaska

Divergent selection pressures induced by different environmental conditions typically lead to variation in life history, behavior, and morphology. When populations are locally adapted to their current environment, selection may limit movement into novel sites, leading to neutral and adaptive genetic divergence in allopatric populations. Subsequently, divergence can be reinforced by development of pre‐ or postzygotic barriers to gene flow. The threespine stickleback, Gasterosteus aculeatus, is a primarily marine fish that has invaded freshwater repeatedly in postglacial times. After invasion, the established freshwater populations typically show rapid diversification of several traits as they become reproductively isolated from their ancestral marine population. In this study, we examine the genetic and morphometric differentiation between sticklebacks living in an open system comprising a brackish water lagoon, two freshwater lakes, and connecting rivers. By applying a set of microsatellite markers, we disentangled the genetic relationship of the individuals across the diverse environments and identified two genetic populations: one associated with brackish and the other with the freshwater environments. The “brackish” sticklebacks were larger and had a different body shape than those in freshwater. However, we found evidence for upstream migration from the brackish lagoon into the freshwater environments, as fish that were genetically and morphometrically similar to the lagoon fish were found in all freshwater sampling sites. Regardless, few F1‐hybrids were identified, and it therefore appears that some pre‐ and/or postzygotic barriers to gene flow rather than geographic distance are causing the divergence in this system.     

Le phytoplancton des étangs de Berre et Vaïne (Méditerranée Nord-occidentale)

Phytoplankton of the Etang de Berre and Etang de Vaïne (N.W. Mediterranean) The phytoplankton in the brackish Etang de Berre and Etang de Vaïne was studied regularly at 12 stations for two years. The recent diversion of the Durance River into the Etang de Berre has effected a fundamental change in this formerly marine environment, which has had a great impact on its plankton populations. A total of 182 taxa were identified, including 111 Bacillariophyceae, 44 Chlorophyceae, and 15 Cyanophyceae. The most abundant species are small freshwater algae, mainly Chlorophyceae, since the salinity is generally less than 3 0/00. However, during summer and fall, as well as in waters near the bottom, the salinity can reach 15 0/00 and marine diatoms are predominant. Because the nutrients in the environment are constantly replenished, phytoplankters are always numerous, ranging in abundance between several million to several hundred million per liter. There is a somewhat irregular seasonal cycle. The average density is about 10⁸ cells/1 in the Etang de Berre, and about double that amount in the Etang de Vaïne. Differences in phytoplankton abundance and composition at the various stations or at various depths are slight.     

Blooms of single bacterial species in a coastal lagoon of the southwestern Atlantic Ocean

We investigated seasonal differences in community structure and activity (leucine incorporation) of the planktonic bacterial assemblage in the freshwater and brackish-water zones of a shallow coastal lagoon of the southwestern Atlantic Ocean. Alphaproteobacteria formed the dominant microbial group in both zones throughout the sampling period. After an intrusion of marine water, members of the SAR11 lineage became abundant in the brackish-water zone. These bacteria were apparently distributed over the lagoon during the following months until they constituted almost 30% of all prokaryotic cells at both sampling sites. At the first sampling date (March 2003) a single alphaproteobacterial species unrelated to SAR11, Sphingomonas echinoides, dominated the microbial assemblages in both zones of the lagoon concomitantly with a bloom of filamentous cyanobacteria. Pronounced maxima of leucine incorporation were observed once in each zone of the lagoon. In the freshwater zone, this highly active microbial assemblage was a mix of the typical bacteria lineages expected in aquatic systems. By contrast, a single bacterial genotype with >99% similarity to the facultative pathogen gammaproteobacterial species Stenotrophomonas maltophilia formed >90% of the bacterial assemblage (>10(7) cell ml(-1)) in the brackish-water zone at the time point of highest bacterial leucine incorporation. Moreover, these bacteria were equally dominant, albeit less active, in the freshwater zone. Thus, the pelagic zone of the studied lagoon harbored repeated short-term blooms of single bacterial species. This finding may have consequences for environmental protection.