Macrozoobenthos communities and biocoenotic assessment of ecological status in relation to degree of human impact in small streams in southwest Germany

One of the major objectives of the VALIMAR project is to determine the ecological significance of various fish biomarker studies as indicators of chronic pollution in small streams in southwest Germany. Results of these fish biomarker investigations were compared to information from complementary studies on the meiobenthos, macrobenthos, and fish community studies to assess the ecological significance of these biomarker investigations. The main objective of this study was to provide biological assessments of the biomarker sites on the basis of the macrozoobenthos communities. Since no validated framework for the assessment of the biological integrity existed in Germany, two multimetric approaches were adapted to the whole stream system by investigating benthos and fish communities of 46 sites of varying degrees of human disturbance. Assessment of the communities was conducted in accordance with the European Community Water Framework Directive. Species distribution of benthos depended upon stream type and pollution status of streams. Biological attributes and bioindices of benthos communities, however, did not correlate with typological parameters like stream size or dominant substrate but correlated better with pollution parameters like conductivity or chloride concentration. Using a set of 18 measures, such as portion of sessile individuals, Rheoindex, oxygen availability index, and portion of pool dwellers, the benthos communities were characterized and evaluated. The composition of the fish communities was mainly determined by stream type, pollution and migration barriers. The influence of chemical parameters could be assessed by developing a“fish chemistry index”, which calculatesthe similarity of the present fish community with the potential natural community, but excludes those species strongly effected by deficits in stream channel morphology. Both fish chemistry index and benthic indices strongly correlated with pollution index parameters, clearly distinguishing between the more polluted Körsch sites and the less pollutedKrähenbach and Aich sites. Most of the single bioindices as well as overall assessment by multimetric indices indicated a gradient of decreasing quality from the reference stream Krähenbach to theslightly polluted Aich and Körsch upstream site (KE, upstream of all sewage treatment plants) and finally to the most polluted Körsch site directlybelow the most upstream sewage treatment plant (KD). According to the Water Framework Directive, the classification of ecological status of the benthos communities ranges from “high” (best of 5 classes) forthe reference stream to “bad” (5th class) for KD. Assessment of the fish community tends to score somewhat worse than the benthos due to deficits in morphological quality of the stream reaches. The benthos assessment and the newlydeveloped “fish chemistry index” correlated well with chemical water quality and hence with biomarkers, whereas ecological status of fish and overall ecological status was also influenced by river morphology. In conclusion all tested assessment methods on biocoenotic level are reliable indicators for the degree of human disturbance on small streams, whereas biomarkers are more suited for risk assessment and the investigation ofcause-effect-relationships.     

Multi-attribute ecological river typology for assessing ecological condition and conservation planning

A river classification framework is needed to make good management and planning decisions about river health and biodiversity. We developed a multi-attribute ecological river typology to address this need in the Australian State of New South Wales (801,428 km²). Multivariate patterns in data collected from 322 reference sites were used to define river types for each attribute: abiotic features (10 types), fish assemblages (6 types) and macroinvertebrate assemblages from river edges (8 types) and riffle zones (5 types). We used classification tree analysis to define broad regions for each attribute and then to construct identification keys for river types within each region using slope, elevation, maximum distance from source, latitude and mean annual rainfall. These keys allow the mapping of the likely spatial extent of river types and the assignment of a multi-attribute river-type identity to a river reach anywhere in the State. We used the average dissimilarity distances among the river types and the rates of misclassification of reference sites to assess the reliability of the assignments for different attributes in different regions. This approach to river classification can be applied anywhere in the world, resulting in simple to highly complex typologies depending on data availability. In data-poor areas it may result in a single attribute typology based on remotely derived variables and a coarsely defined reference condition. In data-rich areas the typology may have a large number of attributes using very large datasets with high resolution. Handling editor: D. Dudgeon     

Setting reference conditions for mesohaline and oligohaline macroinvertebrate communities sensu WFD: Helping to define achievable scenarios in basin management plans

The Water Framework Directive requires all Member States to achieve good ecological quality status for all waters (e.g., transitional waters). For that purpose, Member States must assess water bodies based on information on the Biological Quality Elements listed for each of them (e.g., benthic macroinvertebrates). However, the production of such a quality status classification (high, good, moderate, poor, bad) requires high reference conditions (associated with the absence of, or very low, human pressure) against which the deviation of the samples to be assessed can be measured. In transitional waters, upper stretches have seldom been included in monitoring activities, resulting in very little knowledge of mesohaline and oligohaline areas, which means further difficulty when defining the required reference conditions for these zones.Regarding the benthic macroinvertebrates, large datasets from the mesohaline and oligohaline stretches of the Mondego estuary (four seasons, five years, environmental parameters, density and biomass data) were used to estimate high reference condition values. In terms of environmental conditions, summer was identified as the most stable season and the most suitable for defining reference conditions for selected ecological indicators. For each indicator, the multivariate linear model expressing the best correlation with measured environmental parameters was selected. These models were used afterwards, by replacing the environmental parameters in those equations with their high reference values, to calculate the reference condition for each ecological indicator.Generally, macrobenthic communities within each stretch changed over the years, being mainly influenced by salinity and sediment organic matter. In both stretches, only a few taxa occurred and two species (the amphipod Corophium multisetosum and the bivalve Corbicula fluminea) were clearly dominant. Diversity values (for Margalef, Shannon and ES₅₀ – Hurlbert indices) were low in both stretches, although higher in the mesohaline, and for the most part the ecological condition was low (AMBI – AZTI Marine Biotic Index, MEDDOC – Mediterranean Occidental index, BENTIX biotic index, BO2A – Benthic Opportunistic Annelida Amphipod index). On the whole, the RC estimated for each index followed the same trend, being different for each stretch and below those found for lower sections of the estuary in other surveys.     

Application of clustering techniques for the characterization of macroinvertebrate communities to support river restoration management

The European Water Framework Directive prescribes that the development of a river assessment system should be based on an ecological typology taking the biological reference conditions of each river type as a starting point. Aside from this assessment, water managers responsible for river restoration actions also need to know the steering environmental factors to meet these reference conditions for biological communities in each ecological river type. As such, an ecological typology based on biological communities is a necessity for efficient river management. In this study, different clustering techniques including the Sørensen similarity ratio, ordination analysis and self-organizing maps were applied to come to an ecological classification of a river. For this purpose, a series of sites within the Zwalm river basin (Flanders, Belgium) were monitored. These river sites were then characterized in terms of biotic (macroinvertebrates), physical–chemical and habitat variables. The cluster analysis resulted in a series of characteristic biotic communities that are found under certain environmental conditions, natural as well as human-influenced. The use of multiple clustering techniques can be of advantage to draw more straightforward and robust conclusions with regard to the ecological classification of river sites. The application of the clustering techniques on the Zwalm river basin, allowed for distinguishing five mutually isolated clusters, characterized by their natural typology and their pollution status. On the basis of this study, one may conclude that river management could benefit from the use of clustering methods for the interpretation of large quantities of data. Furthermore, the clustering results might enable the development of a cenotypology useful for efficiently steering river restoration and enabling river managers to meet a good ecological status in most of the rivers as set by the European Water Framework Directive.     

Identifying reference benthic diatom communities in an agricultural watershed (Guadiana River,SW Spain)

Determining the ecological status of river ecosystems should be based on reference (near-natural) conditions and on the use of their biological communities. Identifying reference conditions is particularly difficult in largely disturbed watersheds, such as those of agricultural landscapes. Ecotype reference sites and their characteristic diatom communities were identified in the Guadiana watershed. Three different ecotypes were defined: rivers with siliceous bedrocks, upper watershed calcareous rivers, and mainland watercourses. Thirteen key stressors divided in four categories (channel alteration, hydrological pressure, pollution pressure, and river habitat pressure) were used to select reference sites in each ecotype. Multivariate techniques were used to describe type-specific reference diatom community in each ecotype. Because of the difficulty to define reference sites in the mainland watercourses, some sites were selected under the criterion of minimum impacted sites. Diatoms inhabiting sites included species tolerant to high nutrient concentration and mineralized waters, like Nitzschia inconspicua, Gomphonema parvulum, and Navicula veneta. These taxa defined the best condition (near-to-reference) in an ecotype highly impacted by human activities, the best possible in the long-lasting impaired conditions in the large river watercourses in agricultural landscapes.     

Tributyltin pollution biomonitoring under the Water Framework Directive: Proposal of a multi-species tool to assess the ecological quality status of EU water bodies

The Water Framework Directive (WFD) is a key legislative action developed by the European Union in order to protect aquatic ecosystems. One of the concerning pollutants, listed in this directive as a priority hazardous substance, is tributyltin (TBT), a biocide largely used in antifouling paints and identified as a causative agent of imposex/intersex in gastropods. In order to integrate TBT pollution monitoring within this legislative framework, a practical exercise is here proposed to assess the evolution of surface water ecological status in Ria de Aveiro (NW Portugal). Three bioindicators – the caenogastropods Nucella lapillus, Nassarius reticulatus and Littorina littorea – were used under the general WFD benthic invertebrate quality element, and the vas deferens sequence index (VDSI) and the intersex index (ISI) were selected as biomarkers for the purpose of assessing the condition of this quality element regarding the impact of TBT pollution. Levels of VDSI in N. lapillus and N. reticulatus, and ISI in L. littorea, were surveyed in 2013 and compared with previous data available for the same species and study area in 1998 and 2005, providing a time lapse for a period of 15 years. VDSI and ISI values were converted into Ecological Quality Ratios (EQR) and EQR boundaries were set for each species in order to define the five ecological status classes (High, Good, Moderate, Poor and Bad). We propose N. lapillus as key bioindicator, however the combined use of further species is very useful to cover a wider study area. Based on the proposed method, it is concluded that the ecological status of the surface waters surveyed in Ria de Aveiro, concerning the impact of TBT pollution on the above benthic invertebrate taxa, improved considerably since 1998 and achieved a Good Ecological Status in 2013, thus meeting the WFD environmental objectives for this priority hazardous substance even before 2015.     

Uncertainty in ecological status assessments of lakes and rivers using diatoms

The EU’s Water Framework Directive requires all surface water bodies to be classified according to their ecological status. As biological communities show both spatial and temporal heterogeneity, expressions of ecological status will, inevitably, have an element of uncertainty associated with them. A consequence of this environmental heterogeneity is that there is a risk that status inferred from one or more samples is different to the true status of that water body. In order to quantify the scale of temporal uncertainty associated with benthic diatoms, replicate samples were collected from sites across the ecological status gradient in lakes and rivers in the UK. Variability (expressed as standard deviation of temporal replicate samples from a single site) could be described using a polynomial function and this was then used to calculate the risk of placing a water body in the wrong ecological status class. This risk varied depending on the distance from the class boundaries and the number of replicates. Based on these data, we recommend that ecological status is determined from a number of samples collected from a site over a period of time.     

Assessing river ecological quality using benthic macroinvertebrates in the Hindu Kush-Himalayan region

We developed a system for the assessment of ecological condition for rivers in the lower mountains and lowlands of the Hindu Kush-Himalayan region (Pakistan, India, Nepal, Bhutan, and Bangladesh). We used benthic invertebrates collected from 198 rivers, located in five different ecoregions and covering degradation gradients; samples were taken twice (pre-monsoon and post-monsoon) applying a multi-habitat sampling procedure. Out of 38 environmental parameters, we constructed complex principal component analysis (PCA) gradients, separately for the stressors organic pollution, eutrophication, floodplain land use, and hydromorphological degradation. Correlation analysis between invertebrate metrics and environmental parameters revealed those biological metrics that are most responsive to river deterioration. Redundant metrics were deleted, and the most robust metrics were selected. The range of the index values under reference conditions was defined, and a five-class river quality system was generated.     

Benthic indices and ecological quality of shallow Algeria fine sand community

This study applies six macrozoobenthos-based biotic indices in the shallow coastal waters along the Algerian coast (southern Mediterranean Sea) to establish a reference situation for future use. These shallow fine sand communities were sampled in seven bays along the Algerian coast during the 1980s and the beginning of the 1990s. For the first time, some of the benthic indices used nowadays in Europe for the implementation of the WFD and/or in North America for the Clean Water Act were used to analyze the data collected twenty years ago in order to assess the biological quality status of the Algerian shallow fine sand communities and to provide ecological classifications for the fine sand community along the Algerian coast. The faunal composition showed that the fine sand communities belonged to a Well-Calibrated Fine Sand (WCFS) biocenosis characterized by high species richness and high H′ Shannon-Weaver diversity, with moderate abundance levels only. In the bays of Fetzara, Jijel, Bejaia, Bou Ismail and Arzew (though not in bays of Algiers and Oran), H′ is >4.5, which implies highly diversified communities. The results of the six benthic indices (H′, AMBI, M-AMBI, BENTIX, BOPA and ITI) suggest that good and high quality status assessments are prevalent in all seven bays for the benthic shallow sand communities along the Algerian coast. Nevertheless, the effect of pollution was observed at a small number of sites in the Arzew, Oran and Algiers bays. For example, in Algiers Bay, an east-west quality gradient revealed the effect of organic matter input.     

Developing a diatom monitoring network in an urban river-basin: initial assessment and site selection

There is increasing interest in the restoration of urban river systems because they are affected by multiple point- and diffuse-source impairments. In South Wales, these issues are exemplified by the rivers Taff and Ely, which have a well-documented history of pollution. We developed a network of river-monitoring sites to capture as many sources of impairment as possible and to provide an integrated assessment of basin-wide conditions using established, recently revised and new methods to assess ecological status as required by the Water Framework Directive (WFD). Most of the 34 river sites, except those in upstream areas, had moderate or poor ecological status and low species richness. There were significant correlations between the UK Trophic Diatom Index (TDI), phosphate and nitrate concentrations, but the strongest correlation was with sodium concentrations. Sodium also differentiated best between ecological status classes. The UK TDI, Ecological Quality Ratios and the Indice de Polluosensibilité Spécifique (IPS) correlated strongly, but the IPS reflected chemical conditions less well. There were also possible metal impacts including some upstream sites despite apparently good or high ecological status. These data reveal strong capacity in diatoms for reflecting stressors that affect urban river networks. We recommend (i) further assessments including geographically comprehensive and repeated surveys to underpin local decision-making and (ii) further refinement of the tools currently in use for WFD purposes through the development of specific diagnostic indices or multi-metric methods for a comprehensive assessment of complex catchments affected by multiple impairments.     

Using diatom life-forms and ecological guilds to assess organic pollution and trophic level in rivers: a case study of rivers in south-eastern France

The European Union’s Water Framework Directive has set a target of achieving good ecological status for all aquatic environments in Europe by 2015. In order to determine the quality of aquatic environments, biological indicators such as diatoms are often used. However, biotic diatom indices can be difficult and time consuming to use because of complexity of species determination. We investigated whether the biological traits of diatoms in rivers (life-forms, size classes and ecological guilds) could be used to assess organic pollution and trophic level. We worked on a data set comprising 315 diatom species, determined at 328 river stations of south-east France and a variety of parameters. The abundances of some biological traits differed significantly between the different organic pollution and trophic levels, particularly stalked diatoms, and the motile and low-profile guilds.     

Assessing ecological status with diatoms DNA metabarcoding: Scaling-up on a WFD monitoring network (Mayotte island,France)

Diatoms are excellent ecological indicators of water quality because they are broadly distributed, they show high species diversity and they respond rapidly to human pressures. In Europe, the Water Framework Directive (WFD) gives the legal basis for the use of this indicator for water quality assessment and its management. Several quality indices, like the Specific Polluosensitivity Index (SPI), were developed to assess the ecological quality status of rivers based on diatom communities. It is based on morphological identifications and count of diatom species present in natural biofilms using a microscope. This methodology requires high taxonomic skills and several hours of analysis per sample as 400 individuals must be identified to species level. Since several years, a molecular approach based on DNA metabarcoding combined to High-Throughput Sequencing (HTS) is developed to characterize species assemblages in environmental samples which is potentially faster and cheaper. The ability of this approach to provide reliable diatom inventories has been demonstrated and its application to water quality assessment is currently being improved. Despite optimization of the DNA metabarcoding process with diatoms, few studies had yet extended it at the scale of a freshwater monitoring network and evaluated the reliability of its quality assessment compared to the classical morphological approach.In the present study we applied DNA metabarcoding to the river monitoring network of the tropical Island Mayotte. This island is a French département since 2011 and the WFD has to be applied. This offered the opportunity to scale up the comparison of molecular and morphological approaches and their ability to produce comparable community inventories and water quality assessments. Benthic diatoms were sampled following WFD standards in 45 river sites in 2014 and 2015 (80 samples). All samples were submitted in parallel to the molecular and the morphological approaches. DNA metabarcoding was carried out using Genelute DNA extraction method, rbcL DNA barcode and PGM sequencing, while microscopic counts were carried out for the classical methodology. Diatom community structures in terms of molecular (OTUs) and of morphological (species) were significantly correlated. However, only 13% of the species was shared by both approaches, with qualitative and quantitative variation due to i) the incompleteness of the reference library (82% of morphological species are not represented in the database), ii) limits in taxonomic knowledge and iii) biases in the estimation of relative abundances linked to diatom cell biovolume. However, ecological quality status assessed with the molecular and morphological SPI values were congruent, and little affected by sequencing depth. DNA metabarcoding of diatom communities allowed a reliable estimation of the quality status for most of the rivers at the scale of the full biomonitoring network of Mayotte Island.     

A practical concept for the ecological assessment of aquatic ecosystems: application on the River Dore in France

The ecological assessment of freshwater ecosystems necessitates to consider (i) the operational biological classification for defining a range of ecosystem alterations, (ii) operational biomonitoring tools fulfilling the requirements of the classification, (iii) ecological quality objectives to be preserved or restored. The development of this biomonitoring approach was illustrated by the study of the River Dore. Four biological qualities were defined with their related bio-indicators: (1) general biological quality (invertebrates), (2) biological sediment quality (oligochaetes), (3) biological water quality (diatoms) and (4) biological fish quality (fish communities). The selected bio-indicators were adjusted to an ecological classification model, based on a range of 8 ecological qualities, from `pristine' (S0) to extreme toxicity (S7). The model allows to use numerical index values as well as methods without index calculations, and to assess the general ecological quality of the river and its time-dependent evolution. At the sites downstream of industrial discharges, an improvement of the general ecological quality was observed from 1983 to 1995 in relation to sewage-treatment actions. A general ecological quality objective is proposed for each site of the river, taking into account the past and present ecological evolution of the river. The relevance of the approach greatly depends upon the accuracy of bio-indicator adjustment to the classification model and would be enhanced by taking into account other biological characteristics, like trophic status and hyporheic biocenoses.     

Macrophyte‐based assessment of lakes – a contribution to the implementation of the European Water Framework Directive in Germany

The European Water Framework Directive requires ecological status classification and monitoring of surface and ground water bodies using biological indicators. To fulfill the demands of the Directive, a macrophyte‐based assessment system was developed for application on four lake site types in Germany. Biological lake site types were established using differences in characteristic macrophyte communities, reflecting ecoregion, Ca²⁺ content, mixis and morphology. Ecological status classification of lake sites is based on macrophyte abundance along 275 transects in 95 natural German lakes and the calculation of a reference index value, in some cases supplemented by submerged vegetation data. The reference index quantifies the deviation of species composition and abundance from reference conditions and classifies sites to one of the five ecological quality classes specified in the Directive. Based on an example of Lake Chiemsee, Germany, the possibilities for a wholelake assessment are discussed. (© 2005 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Response of macroinvertebrate communities to anthropogenic pressures in Tajan River (Iran)

The Tajan River was investigated for one year in seven stations, analyzing the relationships between physical properties, water chemistry and aquatic macroinvertebrates. Biotic and diversity indices were compared with canonical unconstrained (CA) and constrained (CCA) ordination to test different methods able to estimate river ecology status. An upstream-downstream gradient was emphasized, in presence of anthropogenic stressors, coming from trout farms, paper factory, agriculture, urbanization, river regulation; the first CCA axis emphasized a natural gradient, bound to altitude, source distance, water temperature, the second CCA axis a pollution gradient. Biotic and diversity indices detected three polluted stations: S3, downstream the Korcha tributary, S6 downstream a paper factory and S7 situated after the Sari town. S4 showed high macroinvertebrates densities, which were attributed to the presence of a dam. Both multimetric and multivariate methods emphasized the need to separate the influence of natural variables from anthropogenic stressors in the Tajan River. To separate the influence of longitudinal gradient from the influence of pollution, it was suggested to evaluate the anthropogenic impact as deviation from a regression line, considering a multimetric index as dependent variable and source distance as predictor variable. The definition of reference sites was problematic in this poorly investigated area and a progress in taxonomic resolution is in any case recommended to better define the ecological status of these waters.     

Assessing the ecological status in species-poor systems: A fish-based index for Mediterranean Rivers (Guadiana River,SW Spain)

The assessment of the ecological status of freshwater ecosystems is a key issue for many international laws such as the Water Framework Directive (WFD) in light of the actual impoverished status of these ecosystems. Different multimetric approaches have been successfully developed in different freshwater environments. However, multimetric indices are difficult to apply to Mediterranean rivers basins, characterized by freshwater fish communities very low in species richness and support a high number of endemics with generalist and opportunistic life strategies. Here we follow a site-specific approach to develop an adaptation of the multimetric procedure usually used in Indices of Biotic Integrity (IBI), resulting in the Index of Community Integrity (ICI). We modeled the presence–absence of 10 native freshwater fish species from the Guadiana River basin using the Assessment of Nearest Neighbor Analyses (ANNA) model, to assess the deviation of the observed and expected community composition at reference condition. ANNA, which is a multi-species model, allowed incorporating in the index some rare species, though not all of them present in the basin. Deviations were transformed into probabilities of belonging to a reference site and species by species measures were then integrated in a final score. The use of presence–absence only data reduces potential errors associated with estimations of species’ abundance and its seasonal changes, which is especially important in Mediterranean environments. The ICI was sensitive to both habitat degradation and the degree of dominance of non-native species within the freshwater fish community (or biotic perturbation), which have been traditionally overlooked in IBIs, but was unresponsive to natural sources of variation. Given the site-specific nature and the simplicity of the index that we propose here, we expect it to be applicable to other Mediterranean basins for which predictive models can be produced.     

An index to track the ecological effects of drought development and recovery on riverine invertebrate communities

In rivers, the ecological effects of drought typically result in gradual adjustments of invertebrate community structure and functioning, punctuated by sudden changes as key habitats, such as wetted channel margins, become dewatered and dry. This paper outlines the development and application of a new index (Drought Effect of Habitat Loss on Invertebrates – DEHLI) to quantify the effects of drought on instream macroinvertebrate communities by assigning weights to taxa on the basis of their likely association with key stages of channel drying. Two case studies are presented, in which the DEHLI index illustrates the ecological development of drought conditions and subsequent recovery. These examples demonstrate persistent drought effects months or several years after river flows recovered. Results derived using DEHLI are compared with an established macroinvertebrate flow velocity-reactive index (Lotic-invertebrate Index for Flow Evaluation – LIFE score) and demonstrates its greater sensitivity to drought conditions. Data from a number of rivers in south east England were used to calibrate a statistical model, which was then used to examine the response of DEHLI and LIFE to a hypothetical multi-year drought. This demonstrated a difference in response between sampling seasons, with the spring model indicating a lagged response due to delayed recolonisation and the autumn model differentiating habitat loss and flow velocity-driven responses. The application of DEHLI and the principles which underlie it allow the effects of drought on instream habitats and invertebrates associated with short or long term weather patterns to be monitored, whilst also allowing the identification of specific locations where intervention via river restoration, or revision of existing abstraction licensing, may be required to increase resilience to the effect of anthropogenic activities exacerbated by climate change.     

An application of canonical correspondence analysis for developing ecological quality assessment metrics for river macrophytes

1. Aquatic macrophyte composition and abundance is required by the European Union's Water Framework Directive for determining ecological status. Five metrics were produced that can be combined to determine the deviation of aquatic macrophytes from reference conditions in Northern Ireland's rivers. 2. Species optima and niche breadths along silt, nitrate, pH, conductivity and dissolved oxygen gradients were generated from aquatic macrophyte and water quality surveys conducted at 273 sites throughout Northern Ireland using Canonical Correspondence Analysis (CCA). Five metric scores based on these environmental gradients were determined at new monitoring sites using the mean optima of the species occurring at the site, weighted by percentage cover and niche breadth of each species. 3. A preliminary reference network of 32 sites of high physico‐chemical and hydromorphological quality, and representative of the range of river types in Northern Ireland, enabled reference metric scores to be produced for each river type. Five unimpacted and twenty impacted sites were used for testing the performance of the metrics. By subtracting reference metric scores from metric scores at a monitoring site measures of ecological impact could be determined along five different impact gradients. Metrics were also combined to give a measure of total ecological change. 4. The metrics system distinguished unimpacted from impacted sites and correctly identified 77% of the known impacts. The metrics distinguished different types of impact, e.g. silt and nitrate. 5. Aquatic macrophyte occurrence and abundance has high natural variability at a site, both temporally and spatially. This method was designed to be sensitive to ecological change whilst reducing noise caused by natural variation.