Host and geographic range extensions of the North American strain of viral hemorrhagic septicemia virus

Viral hemorrhagic septicemia virus (VHSV) was isolated from populations of Pacific sardine Sardinops sagax from the coastal waters of Vancouver Island, British Columbia, Canada, and central and southern California, USA. The virus was also isolated from Pacific mackerel Scomber japonicus in southern California, from eulachon or smelt Thaleichthys pacificus, and surf smelt Hypomesus pretiosus pretiosus from Oregon, USA. Mortality and skin lesions typical of viral hemorrhagic septicemia in other marine fish species were observed among sardine in Canada and in a few surf smelt from Oregon, but the remaining isolates of VHSV were obtained from healthy appearing fish. The prevalence of VHSV among groups of apparently healthy sardine, mackerel and smelt ranged from 4 to 8%, in California and Oregon. A greater prevalence of infection (58%) occurred in groups of sardine sampled in Canada that sustained a naturally occurring epidemic during 1998-99. A captive group of surf smelt in Oregon exhibited an 81% prevalence of infection with clinical signs in only a few fish. The new isolates were confirmed as North American VHSV and were closely related based on comparisons of the partial nucleotide sequence of the glycoprotein (G) gene. The VHSV isolates from sardine in Canada and California were the most closely related, differing from isolates obtained from other marine fish species and salmonids in British Columbia, Canada, Alaska and Washington, USA. These new virus isolations extend both the known hosts (sardine, mackerel and 2 species of smelt) and geographic range (Oregon and California, USA) of VHSV.     

North American Brant: effects of changes in habitat and climate on population dynamics

We describe the importance of key habitats used by four nesting populations of nearctic brant (Branta bernicla) and discuss the potential relationship between changes in these habitats and population dynamics of brant. Nearctic brant, in contrast to most geese, rely on marine habitats and native intertidal plants during the non‐breeding season, particularly the seagrass, Zostera, and the macroalgae, Ulva. Atlantic and Eastern High Arctic brant have experienced the greatest degradation of their winter habitats (northeastern United States and Ireland, respectively) and have also shown the most plasticity in feeding behavior. Black and Western High Arctic brant of the Pacific Flyway are the most dependent on Zostera, and are undergoing a shift in winter distribution that is likely related to climate change and its associated effects on Zostera dynamics. Variation in breeding propensity of Black Brant associated with winter location and climate strongly suggests that food abundance on the wintering grounds directly affects reproductive performance in these geese. In summer, salt marshes, especially those containing Carex and Puccinellia, are key habitats for raising young, while lake shorelines with fine freshwater grasses and sedges are important for molting birds. Availability and abundance of salt marshes has a direct effect on growth and recruitment of goslings and ultimately, plays an important role in regulating size of local brant populations.     

Interactions between soil habitat and geographic range location affect plant fitness

Populations are often found on different habitats at different geographic locations. This habitat shift may be due to biased dispersal, physiological tolerances or biotic interactions. To explore how fitness of the native plant Chamaecrista fasciculata depends on habitat within, at and beyond its range edge, we planted seeds from five populations in two soil substrates at these geographic locations. We found that with reduced competition, lifetime fitness was always greater or equivalent in one habitat type, loam soils, though early-season survival was greater on sand soils. At the range edge, natural populations are typically found on sand soil habitats, which are also less competitive environments. Early-season survival and fitness differed among source populations, and when transplanted beyond the range edge, range edge populations had greater fitness than interior populations. Our results indicate that even when the optimal soil substrate for a species does not change with geographic range location, the realized niche of a species may be restricted to sub-optimal habitats at the range edge because of the combined effects of differences in abiotic and biotic effects (e.g. competitors) between substrates.     

Assessing how habitat loss restricts the geographic range of Neotropical anurans

Habitat loss and fragmentation exert unquestionable negative effects in a wide range of taxa on both regional and local scales. However, there is a debate over whether habitat change impacts geographic species distribution. We assess how habitat loss restricts large-scale species distribution on a geographic scale for four South American anurans that are known to occur in well conserved habitats, yet which are absent in others that are close by and more degraded. We used occurrence records of each species in Brazil and performed different modeling algorithms to compare ensemble distribution models generated by two different sets of predictors: a climate-only versus a climate-habitat procedure. We found that the distribution area predicted by the climate-only procedure was larger than that of the climate-habitat procedure for all species. The areas not predicted by the climate-habitat but predicted by the climate-only procedure for all species are commonly located in inland areas in southeastern Brazil, which coincides with areas that have suffered the most from habitat loss in the country. Plotting the predictions against well-surveyed areas where the species have not been recorded, we found evidence that habitat loss may have restricted the current geographic ranges of Hypsiboas faber and Rhinella ornata. Finally, modeling approaches incorporating habitat landscape metrics, particularly for habitat-specialist species, may be a helpful tool for identifying areas that harbored these species before deforestation took place.     

Geographic range structure in North American landbrids: variation with migratory strategy, trophic level, and breeding habitat

We investigated the relationship between abundance and geographic range structure of 258 North American landbirds. For this purpose we used six measures of range structure based upon fractal geometry and geostatistics, and three ecological characteristics that can influence avian distribution. Permanent residents (PRs) that were abundant showed little fragmentation of their abundance surface at the periphery of their breeding range. Conversely, common Neotropical migrants (NTMs) exhibited low fragmentation of their central populations the abundance surface was smoother for PRs than NTMs or short-distance migrants (SDMs). indicating that changes in abundance occurred more gradually across space for this group. The areas of high abundance for grassland species had little demographic fragmentation, but other populations showed little spatial autocorrelation in abundance. Species that bred in late-successional forests were relatively rare compared to species breeding in other habitat types. Among carnivores. PRs had a higher average abundance than either NTMs or SDMs. Although carnivores had more distributional gaps within their ranges than other trophic groups, the number of gaps did not differ between rare and abundant species, indicating that increased abundance did not change their presence. absence distribution maps. Knowledge of patterns and variations of geographic range structure among species may provide insights into processes that shape and maintain the biodiversity of a continent.     

Evolutionary shifts to self‐fertilisation restricted to geographic range margins in North American Arabidopsis lyrata

Cross‐fertilisation predominates in eukaryotes, but shifts to self‐fertilisation are common and ecologically and evolutionarily important. Reproductive assurance under outcross gamete limitation is one eco‐evolutionary process held responsible for the shift to selfing. Although small effective population size is a situation where selfing plants could theoretically benefit from reproductive assurance, empirical tests of the role of population size are rare. Here, we show that selfing evolved repeatedly at range margins, where historical demographic processes produced low effective population sizes. Outcrossing populations of North American Arabidopsis lyrata have low genetic diversity at geographic margins, with a signature of post‐glacial range expansion in the north and rear‐edge isolation in the south. Selfing populations occur at the margins of two genetic groups and never in their interior. These results corroborate small effective population size as the promoter of self‐fertilisation and have important implications for our understanding of species turnover, range limits and range dynamics.     

The geographic and seasonal dimensions of habitat use in Galerida larks: implications for species coexistence and range limits

In this paper, we investigated the patterns of habitat use in three sibling species of larks: the Thekla lark Galerida theklae which is sympatric with either of two parapatric species of crested larks (G. macrorhyncha replacing G. cristata in arid areas of Morocco). Specifically, we addressed the following questions: 1) do species show niche conservatism in space (France vs Morocco) and time (breeding vs winter period)? 2) Does habitat use change at different interspecific densities? 3) Which factors drive the narrow range limit between G. cristata and G. macrorhyncha? We found that G. theklae was strongly associated with sloping and rocky (rugged) habitats in comparison with crested larks, but habitat use was not entirely consistent in space and time. Evidences for ecological displacement were mitigated. In the only habitat shared by G. cristata and G. theklae in France (vineyards surrounded by low shrubland), we observed a one‐third increase of G. theklae from nearby garrigues in winter, which coincided with a significant decrease of G. cristata after we controlled for density changes in non‐shared habitats. However, in Morocco, the use of rugged habitats by G. theklae was not affected by the prevalence of G. cristata or G. macrorhyncha in surrounding areas, at least at the spatial scales investigated. Our results suggest that interspecific competition plays a role in the parapatric distribution of G. cristata and G. macrorhyncha, because: 1) the alternative of a recent contact receives little support; 2) transition between species coincides with aridity gradients but not with topographic barriers or a sharp ecotone; 3) G. cristata also occurs in arid areas wherein G. macrorhyncha is rare or absent. Overall, our results add support to the view that a better integration of biotic interactions and spatio‐temporal variations in ecological niches might increase the predictive power of ecological niche models.     

The habitat template of phytoplankton morphology-based functional groups

The identification of the main factors driving phytoplankton community structure is essential to understand and adequately manage freshwater ecosystems. We hypothesize that differences in morphological traits reflect phytoplankton functional properties that will be selected under particular environmental conditions, namely their habitat template. We apply a morphology-based functional groups (MBFG) approach to classify phytoplankton organisms and define each group template. We use machine learning techniques to classify a large number of phytoplankton communities and environmental variables from different climate zones and continents. Random forest analysis explained well the distribution of most groups’ biovolume and the selected variables reflected ecological preferences according to morphology. By means of a classification tree it was also possible to identify thresholds of the environmental variables promoting groups dominance in different lakes. For example group III (filaments with aerotopes and high surface/volume including potentially toxic species) was dominant when light attenuation coefficient was >3.9 m⁻¹ and total nitrogen was >2,800 μg l⁻¹. We demonstrate that morphology captures ecological preferences of phytoplankton groups and provides empirical values to describe their habitat template.     

Measures of geographic range size: the effects of sample size

A number of methods have been used for quantifying the sizes of the geographic ranges of species. The consequences of different levels of sampling (the proportion of actual spatial occurrences) are explored for eight of these, using data on the occurrences of butterfly species on a 10 × 10 km grid across Britain. For all methods, the percentage error of estimation (PEE) decreases with the number of 10 × 10 km squares which a species occupies, most rapidly for extent measures, and more rapidly for area measures than for measures of numbers of units occupied. The rate of decline in PEE itself falls as sampling effort increases. At a given sampling level, rank correlations between range sizes measured by different methods are generally high, but there is no consistent change in the magnitude of these correlations as the level of sampling increases. The composition of the set of species with the smallest range sizes changes with the level of sampling.     

Habitat partitioning in European and North American pond-breeding frogs and toads

Abstract. Distributions of species along a freshwater habitat gradient, ranging from ephemeral pools with few predators to permanent lakes with fish, have been used to infer how predation establishes trade-offs that promote ecological specialization. Larval anurans are said to support the trade-off model, but there are few comparable and quantitative habitat data available to assess this claim. I performed a survey of field biologists to evaluate the habitats of similar sets of species in the northern parts of Europe (40 respondents and 12 species) and eastern North America (30 respondents and 8 species), using a standard set of criteria. For six European species I also had quantitative field sampling data, and found close agreement between survey results and predator densities experienced by tadpoles in the field. Distributions of most species were restricted to only part of the habitat gradient, as expected under the trade-off model. The survey confirmed reports that North Ameri-can Rana species replace one another along the gradient, but this was not true in Europe. European Rana were no different from the North American species in their seasonal and geographical overlap, so the absence of habitat partitioning in European Rana may result from interactions with other species or the special impact of glaciation in Europe. Habitats were unrelated to evolutionary relationships among species, suggesting that changes in habitat evolve quickly. The survey approach was useful for comparing distributions of species, and for generating hypotheses about evolutionary responses to habitat gradients.     

Niche breadth and range area in North American trees

Identifying factors affecting species distribution is a longstanding goal in ecology and evolution that is accentuated by our need to anticipate climate change impacts. We sought to test whether any phylogenetic effect can be detected in either the environmental characteristics or range attributes of North American trees, and to explore the existence of a general interspecific pattern in the environmental factors influencing species range size. To do so we tested prevailing hypotheses relating climatic and edaphic characteristics to species range size in the North American arboflora (n = 598), using spatial null models to test for the relevance of observed patterns. We found that interspecific variation in the range area of North American trees is strongly related to the environmental regimes characteristic of the species range. Linear models and phylogenetic regressions involving six environmental characteristics explained 83% of the variance in species range area, and affirmed a positive relationship between niche breadth and range size. Tree species that can tolerate a larger variability in local climatic conditions, deal with harsher edaphic conditions, and weak levels of environmental energy tend to have larger range area; this can account for the greater geographic range of species at higher latitudes, the Rapoport effect. There is a significant phylogenetic signal for both range area and limits in North American trees, and for climatic limits, but not for energy or edaphic characteristics associated with species range. These findings highlight the possibility that species with small geographic ranges may be more sensitive to the effects of climate change.     

Phylogenetic inference of reciprocal effects between geographic range evolution and diversification

Geographic characters--traits describing the spatial distribution of a species-may both affect and be affected by processes associated with lineage birth and death. This is potentially confounding to comparative analyses of species distributions because current models do not allow reciprocal interactions between the evolution of ranges and the growth of phylogenetic trees. Here, we introduce a likelihood-based approach to estimating region-dependent rates of speciation, extinction, and range evolution from a phylogeny, using a new model in which these processes are interdependent. We demonstrate the method with simulation tests that accurately recover parameters relating to the mode of speciation and source-sink dynamics. We then apply it to the evolution of habitat occupancy in Californian plant communities, where we find higher rates of speciation in chaparral than in forests and evidence for expanding habitat tolerances.     

Assembly rules of ground-foraging ant assemblages are contingent on disturbance, habitat and spatial scale

Aim A major endeavour of community ecology is documenting non‐random patterns in the composition and body size of coexisting species, and inferring the processes, or assembly rules, that may have given rise to the observed patterns. Such assembly rules include species sorting resulting from interspecific competition, aggregation at patchily distributed resources, and co‐evolutionary dynamics. However, for any given taxon, relatively little is known about how these patterns and processes change through time and vary with habitat type, disturbance history, and spatial scale. Here, we tested for non‐random patterns of species co‐occurrence and body size in assemblages of ground‐foraging ants and asked whether those patterns varied with habitat type, disturbance history, and spatial scale. Location Burned and unburned forests and fens in the Siskiyou Mountains of southern Oregon and northern California, USA. Methods We describe ground‐foraging ant assemblages sampled over two years in two discrete habitat types, namely Darlingtonia fens and upland forests. Half of these sites had been subject to a large‐scale, discrete disturbance – a major fire – in the year prior to our first sample. We used null model analyses to compare observed species co‐occurrence patterns and body‐size distributions in these assemblages with randomly generated assemblages unstructured by competition both within (i.e. at a local spatial scale) and among (i.e. at a regional scale) sites. Results At local spatial scales, species co‐occurrence patterns and body‐size ratios did not differ from randomness. At regional scales, co‐occurrence patterns were random or aggregated, and there was evidence for constant body‐size ratios of forest ants. Although these patterns varied between habitats and years, they did not differ between burned and unburned sites. Main conclusions Our results suggest that the operation of assembly rules depends on spatial scale and habitat type, but that it was not affected by disturbance history from fire.     

Relationships between geographical range size, body size, local abundance, and habitat breadth in North American suckers and sunfishes

Aim I examine the relationship between geographical range size and three variables (body size, an index of habitat breadth, and an index of local abundance) within a phylogenetic framework in North American species of suckers and sunfishes. Location North America Methods Regressions after independent contrasts of geographical range size, body size, habitat breadth, and local abundance. Results Species with large range sizes tend to be larger-bodied, be more locally abundant, and have higher habitat breadths. Character reconstructions support the prediction that variables associated with rarity (small geographical range size, low local abundance, low niche breadth, and large body size) evolve in unison, although large body size was associated with the opposite traits in these taxa. Gaston & Blackburn (1996a) suggested using visual identification of the lower boundary of the geographical range-body size relationship to identify extinction-prone species; this resulted in thirteen species that are potentially extinction-prone. Main conclusions Similar evolutionary mechanisms appear to operate on body size and other variables related to rarity, even in distantly related taxa.     

Population and geographic range dynamics: implications for conservation planning

Continuing downward trends in the population sizes of many species, in the conservation status of threatened species, and in the quality, extent and connectedness of habitats are of increasing concern. Identifying the attributes of declining populations will help predict how biodiversity will be impacted and guide conservation actions. However, the drivers of biodiversity declines have changed over time and average trends in abundance or distributional change hide significant variation among species. While some populations are declining rapidly, the majority remain relatively stable and others are increasing. Here we dissect out some of the changing drivers of population and geographic range change, and identify biological and geographical correlates of winners and losers in two large datasets covering local population sizes of vertebrates since 1970 and the distributions of Galliform birds over the last two centuries. We find weak evidence for ecological and biological traits being predictors of local decline in range or abundance, but stronger evidence for the role of local anthropogenic threats and environmental change. An improved understanding of the dynamics of threat processes and how they may affect different species will help to guide better conservation planning in a continuously changing world.     

Recent range expansion and divergence among North American Prairie Grouse

Prairie grouse (genus: Tympanuchus) once existed throughout much of North America but have recently experienced significant population declines, isolation, and extinction. In previous molecular studies, contrasting patterns or an unresolved polytomy among Tympanuchus taxa (Tympanuchus phasianellus, Tympanuchus pallidicinctus, and Tympanuchus cupido) have resulted from traditional phylogenetic methods. As an alternative approach, the timing of expansion and the demographic processes that may have lead to this association among haplotypes, namely incomplete lineage sorting or migration, were explicitly investigated by comparing pairwise mitochondrial DNA control region nucleotide differences and through the use of a isolation with migration coalescent model. The timing of geographic expansion and population divergence time estimates generated under these models support previous inferences that Tympanuchus experienced a rapid expansion and diversification in the late Pleistocene 10,000-80,000 years before present. Further, morphological and behavioral differences originally used to describe Tympanuchus species were substantiated with little or no migration identified since population divergence. However, estimates of population divergence and migration between a number of morphologically similar subspecific taxa, including the greater prairie chicken (Tympanuchus Cupido pinnatus), the endangered Attwater's prairie chicken (Tympanuchus Cupido attwateri), and the extinct heath hen (Tympanuchus Cupido cupido), suggest these taxa are as differentiated with each other as they are from other Tympanuchus species. This information will prove useful in conservation efforts by providing estimates of demographic history that have helped shape the evolutionary relationships among Tympanuchus grouse.     

The Tay-Sachs disease gene in North American Jewish populations: geographic variations and origin.

From data collected in a North American Tay-Sachs disease (TSD) heterozygote screening program, the TSD carrier frequency among 46,304 Jewish individuals was found to be .0324 (1 in 31 individuals). This frequency is consistent with earlier estimates based on TSD incidence data. TSD carrier frequencies were then examined by single country and single region of origin in 28,029 Jews within this sample for whom such data were available for analysis. Jews with Polish and/or Russian ancestry constituted 88% of this sample and had a TSD carrier frequency of .0327. No TSD carriers were observed among the 166 Jews of Near Eastern origins. Relative to Jews of Polish and Russian origins, there was at least a twofold increase in the TSD carrier frequency in Jews of Austrian, Hungarian, and Czechoslovakian origins (P less than .005). These findings suggest that the TSD gene proliferated among the antecedents of modern Ashkenazi Jewry after the Second Diaspora (70 A.D.) and before their major migrations to regions of Poland and Russia (before 1100 A.D.).     

Assembly of the eastern North American herpetofauna: new evidence from lizards and frogs

Darwin first recognized the importance of episodic intercontinental dispersal in the establishment of worldwide biotic diversity. Faunal exchange across the Bering Land Bridge is a major example of such dispersal. Here, we demonstrate with mitochondrial DNA evidence that three independent dispersal events from Asia to North America are the source for almost all lizard taxa found in continental eastern North America. Two other dispersal events across Beringia account for observed diversity among North American ranid frogs, one of the most species-rich groups of frogs in eastern North America. The contribution of faunal elements from Asia via dispersal across Beringia is a dominant theme in the historical assembly of the eastern North American herpetofauna.