Fish trophic structure in estuaries,with particular emphasis on estuarine typology and zoogeography

A comparative analysis of the fish trophic structure was undertaken on some 190 South African estuaries spanning three zoogeographic regions and incorporating three broad estuarine types. Fish biomass trophic guild compositions and biomass trophic spectrum profiles were analysed using multivariate statistical techniques and included both inter‐regional (zoogeographic) and intra‐regional (estuarine typology) comparisons. Differences in the fish trophic structure of the various estuary types within each zoogeographic region were observed; these were linked to the relative biomass contribution of the various trophic guilds and also to differences in biomass trophic spectrum profiles of the fishes in each estuary type within each region. In spite of these differences in trophic structure, all estuaries were dominated by detritivores, which suggests that the main food source (detritus) is similar in all biogeographic regions. Preliminary indications are that a similar dependence by estuary‐associated fishes on detritus food sources exists on a global basis but that detailed studies are required in order to confirm this assertion.     

A multi‐metric fish index to assess the environmental condition of estuaries

The development of a multi‐metric fish index, the Estuarine Fish Community Index (EFCI), for assessing estuarine environments is described. The index comprises 14 metrics or measures that represent four broad fish community attributes: species diversity and composition, species abundance, nursery function and trophic integrity. The individual metrics were evaluated using data that were collected on a South African estuary that was degraded and in which rehabilitation measures were implemented. The evaluation suggested that the selected metrics adequately measure the condition of separate but related components of estuarine fish communities and that these reflect environmental condition. Reference conditions and metric thresholds were derived from fish community data collected during an extensive national study. The final multi‐metric index was then constructed and evaluated. The EFCI combines both structural and functional attributes of estuarine fish communities and integrates these to provide both a robust and sensitive method for assessing the ecological condition of estuarine systems. It is also an effective communication tool for converting ecological information into an easily understood format for managers, policy makers and the general public.     

Fish community response to increased river flow in the Kariega Estuary,a freshwater-deprived,permanently open southern African system

The littoral and demersal ichthyofaunal community structure in the freshwater-deprived, permanently open Kariega Estuary was investigated following heavy rain in November 2006 and was compared to low-flow condition data from 1991 and 1996. All surveys took place during the spring months and allowed for a comparison of a wet and a dry spring period. The 2006 freshwater pulse generated a strong horizontal salinity gradient within the estuary. In the absence of freshwater inflow, the ichthyofaunal community in the littoral zone was numerically dominated by estuarine resident species, whilst after the freshwater pulse an increased contribution of marine migrant species was observed. Within the demersal zone, marine straggler species dominated during the dry spring period and estuarine residents during the wet spring period. Numerical analyses of the littoral and demersal fish assemblages indicated the presence of three distinct groupings — corresponding to the upper and middle reaches during separate wet and dry periods, and a community associated with the lower reaches of the estuary. It is suggested that the shift in community structure between the dry and wet spring periods could be related to altered physico-chemical and trophic conditions within the estuary, as well as the increased presence of freshwater and estuarine olfactory cues within the coastal zone, which would have resulted in the recruitment of 0+ estuary-associated marine species into the Kariega system.     

中国河口湿地研究现状及展望

河口湿地由于其发育和形成过程较为特殊,加上其丰富的动植物资源以及重要的经济地位,已成为我国湿地研究领域的一个新热点.本文在分析中国河口湿地分布与特征的基础上,从河口湿地生物多样性、河口湿地生态过程及动态变化、河口湿地的形成和发育机制、河口湿地景观格局及动态演变、河口湿地恢复与重建、河口湿地的人地关系、河口湿地与全球变化、河口湿地评价以及数字河口湿地建设等方面总结了我国河口湿地研究现状.尽管中国河口湿地研究的方向和成果已经比较丰富,但与国外相比,在技术和理念上还存在一定差距.结合国外河口湿地研究的最新动态,提出了中国河口湿地未来研究的4个重要方向：河口湿地的人地关系、河口湿地的恢复和重建、河口湿地与全球变化以及河口湿地综合信息系统建设.     

The role of connectivity and physicochemical conditions in effective habitat of two exploited penaeid species

The value of estuarine habitats is often measured by their contribution to the adult component of the population, but a broader suite of attributes can also contribute to nursery function. Identifying and quantifying these elements allows habitat repair to be effectively targeted toward improving ecosystem function for desirable species. We present a study that incorporates stable isotopes and quantitative sampling to investigate the relative importance of different estuarine areas for juveniles of exploited prawn species within the context of habitat rehabilitation, and the potential drivers of these relationships. Eastern King Prawn (Penaeus [Melicertus] plebejus) and School Prawn (Metapenaeus macleayi) were studied for two years in the lower Hunter River estuary, on the temperate east coast of Australia. The higher salinity areas near the lower end of the estuary were most important for Eastern King Prawn, and marsh systems in the lower estuary were only important for the species where there was good connectivity with oceanic water. Areas along the estuary were important for juvenile School Prawn, especially marsh habitats, and relative abundance tended to increase with increasing distance along the estuary. Designation of effective juvenile habitat for School Prawn may have been affected by high fishing mortality in fished areas, but this requires further investigation. Salinity, depth, turbidity and distance along the estuary were all important indicators of prawn distribution. The implications of these patterns for current and future habitat rehabilitation in temperate Australia are discussed.     

Transport and retention of nitrogen and phosphorus in the sub-tropical Richmond River estuary, Australia – A budget approach

Nitrogen and phosphorus loads in the sub-tropicalRichmond River estuary were quantified and materialbudgets were developed over two years of contrastingfreshwater discharge. During both years >74% of thenitrogen and >84% of the phosphorus load enteredthe estuary during one month when flooding occurred inthe catchment. Due to larger flood magnitude, loadsduring the 1995/96 year were 3.3 and 2.5 times greaterthan during the 1994/95 year for nitrogen andphosphorus respectively. During floods the estuarinebasin was completely flushed of brackish water and themajority of the nutrient loads passed directly throughthe estuary. The nutrient load retained in the estuaryduring floods was inversely proportional to floodmagnitude. Annual budgets show that >97% of thenutrient load entering the estuary was from diffusecatchment sources; precipitation, urban runoff, andsewage were negligible. Less than 2.5% of thenitrogen and <5.4% of the phosphorus loads enteringthe estuary were retained in sediments. During dryseasons the estuary became a net sink for nitrogeninput from the ocean and the estuarine sedimentsremained a net source of phosphorus to the watercolumn and ocean. The process of flood scouring islikely to be the cleansing mechanism responsible formaintaining water quality both on an annual basis andover the last 50 years and may also be responsible forpotential nitrogen limitation. The sub-tropicalRichmond River estuary contrasts with the majority oftemperate systems of North America and Europe whichtypically have lower inter- and intra-annual nutrientload variability, longer and less variable flushingtimes, and greater nutrient retention.     

Linking terrestrial and benthic estuarine ecosystems: organic matter sources supporting the high secondary production of a non-indigenous bivalve

The Asian clam, Corbicula fluminea, is among the most pervasive invasive species in freshwater ecosystems worldwide. Our objective was to study C. fluminea’s functional response in terms of feeding behavior and food selectivity, using the natural variation in organic matter (OM) sources that occur in estuarine environments. Using C and N stable isotopes, we identified and quantified the contribution of different OM sources supporting the production of C. fluminea along the salinity gradient occupied in the Minho River estuary (NW-Iberian Peninsula, Europe), where this species presently dominates the benthic macrofauna biomass. We observed a pronounced shift in the quality of OM available for C. fluminea along the estuarine mixing zone. Stable isotope analysis, POM C/N, and phytoplankton contribution estimates based on C:Chl a revealed that POM was largely comprised of terrestrial-derived OM in tidal freshwater stations (TFW) and was increasingly comprised of phytoplankton, a more palatable food source, towards the polyhaline estuary. A similar shift in the isotopic composition along the estuarine mixing zone was observed in C. fluminea, suggesting a shift in food resources. Accordingly, based on a Bayesian stable isotope mixing model, there was an upstream–downstream counter gradient in the contribution to C. fluminea biomass from terrestrial-derived OM (41–64 % in TFW) and phytoplankton (29–55 % in the brackish estuary). Although the majority of the food sources identified were filtered from the water column (70–80 %), reliance on sediment OM and microphytobenthos provided evidence for deposit feeding by C. fluminea. We conclude that C. fluminea has the ability to adapt to environments with low food quality because it can consume terrestrial-derived OM. This can be a competitive adaptation in systems with perennial low food quality such as the Minho River estuary. Moreover, its ability to couple benthic and pelagic environments and terrestrial ecosystems demonstrates a strong potential to alter food web flows in aquatic ecosystems.     

Distribution et écologie des associations d’ostracodes récents de l’estuaire de Tahadart (Maroc Nord-Occidental)

Forty-five ostracod species were identified for the first time in the Tahadart estuary (NW Morocco). They can be grouped into five different ecological assemblages, which characterise four estuarine ecozones. A first ecozone occurs in temporary waters located between the tidal channels of the inner estuary and it is characterised by ostracod species typical of fresh to brackish waters. In the main estuary area, the ostracod fauna is dominated by clearly euryhaline species that account for nearly 70% of the entire fauna. The relative abundance of the different assemblages allows us to subdivide the estuarine environment along a longitudinal profile into mouth, outer and inner estuary. The estuary's mouth displays the highest values of marine euhaline, phytal and periphytal as well as ubiquitous species and the lowest values of very euryhaline species; the latter are the only species present in the inner estuary. The outer estuary exhibits intermediate percentages of the different ecological assemblages. This distribution, characterized by the absence of limnic species, points to the influence of marine waters in an open estuary with a low fresh water input. In the estuary's mouth, as well as in the outer estuary, where the slikke and schorre are well developed, the distance to the emersion line is underlined by the lower occurrence of marine and ubiquitous species and the higher occurrence of the very euryhaline ones. The Tahadart estuary displays a moderate to high ostracod diversity with distinct differences among the ecological zones. The stress of this environment is highlighted by the low diversity characteristics of extreme environments, alike in the inner estuary and in some areas located far from the emersion level. The relative position with respect to the emersion line, as well as the presence of gross detritic sediments and vegetation, appear to be of importance for the good development of the ostracods.     

Does estuarine health relate to catchment land-cover in the East Kleinemonde system,South Africa?

Temporarily open/closed estuaries in South Africa are being subjected to varying degrees of catchment land-cover transformation. Natural landscapes and hydrological functions are integral to the functioning of estuaries. The relationship between catchment land-cover and the health of the East Kleinemonde Estuary was investigated between 2011 and 2013, using geographic information system (GIS) techniques to delineate and quantify land-cover in the whole catchment, in the lower section of the catchment, and in the 1 km and 100 m buffer zones surrounding the estuary. Human activities, as outlined by the Department of Water Affairs resource directed measures (RDM) studies, and their associated land-cover classes are described. Possible links between catchment and buffer zone land-cover class composition and the health of the East Kleinemonde Estuary were explored. There was a relationship between catchment land-cover and estuarine health within all assessed catchment delineations. Natural land-cover was determined to be the best predictor of estuarine health for the East Kleinemonde system. The methods employed in this study can be applied to other temporarily open/closed estuaries in South Africa to prioritise these systems for rehabilitation and/or conservation.     

Short and long-term movement and site fidelity of juvenile Haemulidae in back-reef habitats of a Caribbean embayment

In the context of a main project that aims to recover modern data on diatom distribution applicable to paleosalinity reconstructions in coastal areas of Southern South America, the composition and distribution of dead diatom assemblages in the littoral zone of the Quequén Salado estuary (Argentina) were studied. Diatom zones were defined along the estuarine gradient by cluster analysis and related to the salinity range and sediment composition by Canonical Correspondence Analysis. Four diatom zones were identified. A mixture of marine, brackish and freshwater diatoms, probably allochthonous, characterized the inlet (zone I). Marine/brackish taxa, represented mainly by Paralia sulcata dominated zone II, characterized by polyhaline conditions and sandy sediments. Zone III was characterized by mesohaline conditions, muddy sediments and the dominance of the estuarine diatom Amphora helenensis. Brackish/freshwater and freshwater diatoms dominated the headwaters (zone IV), where salinity was always below 5‰. The comparison of Quequén Salado diatom assemblages with previous results from the Quequén Grande estuary showed a similar taxonomic composition between both estuaries. However, differences in the salinity ranges of the estuaries (related to differences in the degree of human impact and tidal range) lead to a displacement in their spatial distribution along the longitudinal estuarine axis. This paper contributes to the knowledge of the ecological requirements of South American estuarine diatoms and provides useful data for paleosalinity reconstructions in the region. Electronic Supplementary Material Supplementary material is available in the online version of this article at and is accessible for authorized users Handling editor: J. Padisak     

Archaeaplankton in the Columbia River, its estuary and the adjacent coastal ocean, USA

PCR-amplified 16S rRNA genes from particle-attached and free-living Archaea in the Columbia River estuary, particle-attached Archaea in the river, and Archaea in the adjacent coastal ocean were cloned, and 43 partial sequences were determined. There was a high diversity of Archaea in the estuary, especially among the particle-attached Archaea, with representatives from four major phylogenetic clusters. Eighteen of 21 estuarine clones were closely related to clones from the river and the coastal ocean or to clusters of marine and soil clones identified in other studies. This contrasts with a similar study of the estuarine bacterial community that found 62% of bacterial 16S rRNA clones to be unique to the estuary. Archaea in the estuary were primarily allochthonous, and therefore, unlike the bacteria, probably do not form a native estuarine community.     

Residency time, migration route and survival of Atlantic salmon Salmo salar smolts in a Canadian fjord

Atlantic salmon Salmo salar smolts (n = 181) from two rivers were surgically implanted with acoustic transmitters and released to determine migration route, residency time and survival in a 50 km long estuarine fjord located on the south coast of Newfoundland, Canada. Data obtained from automated receivers placed throughout the Bay d'Espoir fjord indicated that migrating smolts used different routes to reach the outer areas of the fjord. The duration of time that smolts spent in the immediate estuary zone also differed between the two localities (7 and 17 days) although the total time smolts were resident in the fjord was similar and extensive (40 days). Many smolts were resident for periods of 4-8 weeks moving back and forth in the outer part of the fjord where maximum water depths range from 300 to 700 m. Survival in the estuary zone was greater for smolts with prolonged residency in estuarine habitat. Overall smolt survival to the fjord exit was moderately high (54-85%), indicating that the initial phase of migration did not coincide with a period of unusually high mortality.     

Using deterministic models to assess risk in sediment-impacted estuaries

Terrestrial sediments transported off disturbed watersheds can threaten downstream estuarine and coastal environments. Practitioners in the field of environmental management need to be able to assess how activities that disturb the land are likely to impact on downstream estuarine and coastal receiving waters. Such assessments usually take the form of estimating risk, which has two components: the extent of undesirable consequences and the probability of occurrence of those consequences. The consequence in this case is primarily the ecological damage. In order to estimate risk, a methodology was developed around the use of a deterministic computational model of watershed/estuarine sediment transport. Model simulations are run which cover the physically realistic range of the controlling variables (e.g., wind speed, wind direction, sediment runoff). The model results are related to estuary damage and combined with the probability of occurrence for each scenario, providing a means of quantifying risk. In addition, answers to `long-term average', `most likely' and `worse case' type questions can be made. The procedure has the advantages of being easily implemented, transparent and repeatable. It is also more efficient than a standard Monte-Carlo procedure. The risk associated with changes in landuse can be examined without repeating model simulations. The example used to illustrate the method is that of a developing watershed in which proposed building activities are expected to alter the sediment yield to the downstream estuary during floods, which in turn is expected to smother shellfish beds. By elucidating risk associated with each development scenario, the management debate can be focused on choice of an acceptable risk level.     

Spatio-temporal distribution of early life stages of the European anchovy Engraulis encrasicolus L. within a European temperate estuary with regulated freshwater inflow: effects of environmental variables

The spatio-temporal distribution of the anchovy Engraulis encrasicolus in its early life stages was related to environmental conditions within the Guadalquivir River estuary (south-west, Spain) by monthly field surveys during nine periods of recruitment (May 1997 to December 2005). Anchovy post-larvae showed a consistent seasonal pattern of abundance throughout the study period: each year, a high anchovy recruitment period (HARP) occurred from late May to November, with a main peak in July, coinciding with the period when environmental conditions were more stable. Results of stepwise multiple regression analysis indicates that density of its main prey, Mesopodopsis slabberi, explained 45% of total anchovy density variance. Furthermore, after removing the effect of this variable, interannual differences in the anchovy estuarine recruitment were not significant. Clear spatial and tidal trends were also observed for both prey and predator: at each sampling date, density decreased from the outer to inner estuary; at each sampling site, density was higher during ebbs than during floods. Field distributions related to environmental gradients during HARP indicated that the populations of E. encrasicolus and M. slabberi seemed to hold a steady position at a point on the salinity gradient by longitudinal displacement within the estuary. Since freshwater management actions affect the longitudinal position of the salinity gradient as well as the input of nutrients to the estuary and adjacent coastal areas, it is hypothesized that this factor may also be relevant to anchovy recruitment.     

Organic matter transport across a macrotidal estuary grandient: the Seine estuary,Fance

The macrotidal Seine estuary receives mineral and organic fluxes from a strongly industrialized basin. Upstream-downstream analysis of POC, polysaccharides and phenolic compounds in the particulate fraction indicated clearly the continental inflow. Within the maximum turbidity zone, the organic matter/suspended particulate matter ratio is lower than elsewhere which results from the dilution effect. Particulate tracers were quantified using grain size analysis and S.E.M. techniques. These sedimentary data defined the ratio of marine to continental particulate flux and mechanisms controlling the suspended particulate matter load within the estuarine mixing zone (resuspension, frontal enrichment and turbulent mixing processes). Organic parameters confirm the data on the mineral matter and were used to distinguish between the marine and continental inputs, from the upstream and downstream samples. Between the two endmembers, variations in organic parameters were controlled mainly by the hydrodynamics in the estuarine zone, rather than by salinity changes.     

Seasonality in macroinvertebrate community composition across a neglected ecological boundary, the freshwater-estuarine transition zone

The boundary between freshwater and estuarine ecosystems at the extreme head of estuaries has received little attention from benthic ecologists. This short communication addresses this research caveat, presenting preliminary data on the spatial and temporal (seasonal) variation in the composition of benthic macroinvertebrate communities across the transition zone at the head of a small British estuary. Cluster analysis and multidimensional scaling ordination demonstrated that a distinct community occurred at a point just preceding the recognised transition between fresh and brackish waters (salinity <0.2PSU). This transition community contained a mixture of freshwater and estuarine taxa and, despite seasonal migrations at the head of the estuary, community structure remained significantly distinct from that at adjacent sites throughout the year. These preliminary data suggest that the community dynamics across the transition zone show complex patterns and may offer an important research opportunity in aquatic ecology.     

Biogeographical distribution of diverse anaerobic ammonium oxidizing (anammox) bacteria in Cape Fear River Estuary

Summary Anaerobic ammonium oxidation (anammox) specific PCR method was developed to examine diversity and distribution of anammox bacteria in sediments collected from three different sites at Cape Fear River Estuary, North Carolina, where environmental parameters vary greatly over the year. Abundance and activities of anammox bacteria in these sediments were measured using the quantitative PCR (Q-PCR) method and ¹⁵N isotope tracer incubations. Different anammox bacterial communities composed with Brocadia , Kuenenia , Jettenia or Scalindua were found among sites along the estuarine gradient. Seasonal variations of anammox community structures were observed along the estuary based on terminal restriction fragment length polymorphism (T-RFLP) analysis of 16S rRNA genes. Correlation analysis suggested that salinity variation influenced the diversity and distribution of different anammox bacteria in the estuary. Q-PCR assays of anammox bacteria showed temporal and spatial variations of their abundances, which were highly correlated to salinity variation. ¹⁵N isotope tracer incubations measured different anammox rates and its per cent contribution to total N₂ production among sites. The highest anammox rate was found at the site where Scalindua organisms dominated with the highest anammox bacterial abundance. Thus, we demonstrated a biogeographical distribution of diverse anammox bacteria influenced by salinity, and provide evidence to link anammox abundance and activities in estuarine sediments.     

Response of intertidal macrobenthic communities and primary producers to mitigation measures in a temperate estuary

The main goal of this study was to evaluate the response of intertidal macrobenthic communities associated with Zostera noltii meadows in a temperate estuary (Mondego, Portugal) to the application of mitigation measures aimed at decreasing eutrophication symptoms. In order to assess possible ecological improvements regarding the seagrass habitat and associated macrobenthic communities, data from four different periods, corresponding to the prevailing conditions of distinct systems, were considered. This study (1) gives concrete examples of pathways of benthic intertidal communities’ degradation and recovery; (2) it analyses a long-term dataset (covering almost 25 years) of intertidal communities from a southern European estuary; (3) it is focused on a worldwide problem, and so has potentially far-reaching interest; (4) it exemplifies some of what may be the consequences of the dialogue between science and managers; (5) it assesses the impact and effectiveness of a large-scale mitigation intervention paid for by public funding.The application of preliminary mitigation measures (in 1998) and the full re-establishment of the communication between the two estuarine subsystems (in 2006) allowed for an improvement in the macrobenthic condition and confirmed that hydrologic conditions in the estuary have been the major drivers of the changes observed over the last two decades. However, evaluating the efficiency of the large-scale intervention proved to be a complex task since different communities showed distinct pathways and momentums of recovery.The present study provided valuable insights concerning sustainable long-term management solutions regarding the Mondego Estuary. These particular insights could therefore be useful as a management action guideline applied to other estuarine ecosystems undergoing similar eutrophication problems.     

福建敖江口表层沉积硅藻空间分布特征

为探讨福建敖江口表层沉积硅藻空间分布特征,2019年7月对敖江口进行表层沉积硅藻的采样调查,并研究了硅藻与环境因子的关系。结果表明,从13个站点共检出硅藻114种,隶属于39属。硅藻丰度具有从河口向外海先减少后增加的变化特征。聚类分析表明,主要硅藻属种可划分为淡水种组合带和半咸水-咸水种组合带。典型对应分析（CCA）表明,表层海水温度和盐度是影响硅藻分布的主要环境变量。河口区盐度相对较低,主要分布淡水种双面曲壳藻、优美曲壳藻和颗粒沟链藻;外海区北部盐度相对较高,主要分布咸水种流水双菱藻;外海区南部盐度相对较低,主要分布淡水种优美曲壳藻和颗粒沟链藻;滩涂的沉积物较粗,主要分布优美曲壳藻。此外,河口区和外海区南部可能存在一定的水体污染。     

Transport of molluscan larvae through a shallow estuary

Dispersal of invertebrate larvae is determined by larval swimmingbehavior, the length of planktonic development and the hydrodynamicregime. Larvae of estuarine invertebrates must refrain fromexport or invade an estuary after development in the ocean.This study investigates retention patterns of estuarine molluscsby measuring time series of larval abundance in relation tohydrodynamic processes. Previous investigations of larval dynamicshave generally focused on larger estuarine systems that areoften stratified and have relatively long hydraulic residencetimes. The estuary studied in this investigation supports densepopulations of infaunal clams yet has a water depth to tidalamplitude ratio near unity. To access processes affecting larvalretention, the circulation patterns of the estuary were measuredwith time series of salinity, temperature, pressure and horizontalvelocity. Transport rates of larvae between ocean and estuary,and within the estuary proper, were calculated from velocityand larval concentration time series. The daily residence timeof the estuary was determined for the summer spawning period.The results demonstrate that molluscan larvae were routinelytransported between the estuary and nearshore zone in tidalflows. Based on the magnitude of the horizontal current velocities,passive transport of larvae predominates during most of thetidal cycle in the estuary. Residence time calculations suggestthat the ability of larvae to remain in the estuary throughlarval development is unlikely, and there was no evidence ofselective retention of mature bivalve larvae in the estuary.Rather, larvae are exported rapidly from the estuary and undergodevelopment in the coastal ocean. Mesoscale physical processesin the coastal ocean probably control variation in the deliveryof larvae back to estuarine systems. Recruitment to this andsimilar estuaries must therefore be dependent on invasion.