Phylogeny of Labidodemas and the Holothuriidae (Holothuroidea: Aspidochirotida) as inferred from morphology

The Holothuriidae is one of the three established families within the large holothuroid order Aspidochirotida. The approximately 185 recognized species of this family are commonly classified in five nominal genera: Actinopyga , Bohadschia , Holothuria , Pearsonothuria and Labidodemas. Maximum parsimony analyses on morphological characters, as inferred from type and nontype material of the five genera, revealed that Labidodemas comprises highly derived species that arose from within the genus Holothuria . The paraphyletic status of the latter, large (148 assumed valid species) and morphologically diverse genus has recently been recognized and is here confirmed and discussed. Nevertheless, we adopt a Darwinian or eclectic classification for Labidodemas , which we retain at generic level within the Holothuriidae. We compare our phylogeny of the Holothuriidae with previous classifications of its genera and subgenera, and make suggestions concerning possible systematic changes.  © 2005 The Linnean Society of London, Zoological Journal of the Linnean Society , 2005, 144 , 103−120.     

Evolution and phylogeny of the genus Natrix (Serpentes: Colubridae)

Some aspects of the natural history of snakes of the colubrid genus Natrix have been well studied. With their extensive European distribution and relative abundance, their ecology, reproduction and behaviour are well known. Yet other facets of their biology remain poorly understood. These include knowledge of Natrix phylogeny, hypotheses explaining the current distribution of the three extant members of the genus, and their evolution and relationships. In this study we used molecular data, the nucleotide sequences of four protein-coding mitochondrial genes (3806 bp total), to provide a well-supported phylogeny for the genus Natrix . With these molecular data, evidence from the fossil record, and knowledge of palaeogeological events, we used two approaches in designing a time scale which we used to date the major events in Natrix speciation and intraspecific variation. Our data strongly support a phylogeny for the genus in which N. maura is basal with N. natrix and N. tessellata being sister species. The calibrated molecular clock suggests that N. maura diverged from the common ancestor of the three species 18–27 mya and that N. natrix and N. tessellata diverged 13–22 mya. Although the ranges of these estimates are large they support an early Miocene to late Oligocene origin for the three species. Intraspecific divergence is estimated to have commenced 5.3, 6.0 and 6.7 mya with evolutionary rates of 1 : 1.25 : 1.35% per million years for N. maura, N. natrix and N. tessellata , respectively.  © 2006 The Linnean Society of London, Biological Journal of the Linnean Society , 2006, 87 , 127–143.     

Phylogeny and systematics of the Orycteropodidae (Mammalia,Tubulidentata)

The systematics of the order Tubulidentata is poorly known. Its phylogeny has never been thoroughly analysed and only a single review has ever been performed, which was over 30 years ago. This situation has hampered palaeoecological and palaeobiogeographical studies of these Neogene mammals. The present revision of the Orycteropodidae deals with the phylogeny and systematics of all African and Eurasian species over the last 20 Myr. The first comprehensive cladistic analysis of the family is presented here. The results of this analysis, based on 39 coded morphological characters, supplemented by non‐coded features taken from all over the skeleton, was used to reconstruct the phylogeny of the order Tubulidentata. Two distinct lineages within the genus Orycteropus are recognized and characterized. The new genus Amphiorycteropus is subsequently created, in order to harmonize taxonomy and phylogeny. The fossil genera Leptorycteropus and Myorycteropus are validated, bringing the number of genera in the order Tubulidentata to four. Moreover, within the family Orycteropodidae, the number of confirmed species is now 14. The outcome of this study allows us to propose a consistent palaeobiogeographical scenario for aardvarks. Finally, this revision represents the most comprehensive work on the evolutionary history of the order Tubulidentata to date, and provides a new framework for future studies. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2009, 155 , 649–702.     

The family Alestidae (Ostariophysi, Characiformes): a phylogenetic analysis of a trans-Atlantic clade

The overall most parsimonious hypothesis of relationships based on 200 characters indicates that the Alestidae is the closest relative of Chalceus , a genus previously assigned to the Neotropical Characidae. Chalceus is shifted into the Alestidae, which becomes the only trans-Atlantic family level group within the Characiformes. Various previously proposed suprageneric assemblages within the Alestidae (e.g. Petersiini) failed to delimit monophyletic groups under the intrafamilial phylogenetic analysis. The evaluation of fossil alestids within the context of the phylogeny indicates that the ancestors of Alestes , Arnoldichthys , Brycinus , Bryconaethiops and Hydrocynus evolved prior to the early Eocene (Cuisian of Upper Ypresian), 49–54.8 million years ago, with the fossil Alestoides most closely related to Alestes. The phylogenetic information further indicates a minimum age of 90–112 million years for the Alestidae. Contrary to previous hypotheses, the fossil African Sindacharax was found to be most similar to the clade including the alestid genus Bryconaethiops rather than most closely related to the South American subfamily Serrasalminae. Evaluation of the fossil Mahengecharax carrolli fails to support its hypothesized placement as the sister group to all Recent members of the Alestidae. Two separate episodes of miniaturization and one episode of gigantism occurred within the evolution of the Alestidae.  © 2005 The Linnean Society of London, Zoological Journal of the Linnean Society , 2005, 145 , 1−144. No claim to original US government works.     

A new species of Orycteropodidae (Mammalia, Tubulidentata) in the Mio-Pliocene of northern Chad

A new species of fossil Tubulidentata has been found by the Mission Paléoanthropologique Franco-Tchadienne in Northern Chad. It is the first fossil Orycteropodidae (aardvark) from the Mio-Pliocene of Central Africa. The new taxon, Orycteropus abundulafus sp. nov. , is considered in the framework of the available Orycteropodidae fossil record. The Chadian specimen is characterized by the highest dental robustness index among all Tubulidentata, the presence of crests on the pterygoid, the triangular-shaped olecranon fossa and the reduction of the deltoid crest. All of these characters are linked to a less fossorial animal that had a tougher diet. This new African species is closer to the Eurasian O. gaudryi than to any other Tubulidentata. Together they form a clade distinct from that which includes O. afer . This is the first evidence of a relationship for aardvarks between Africa and Eurasia. An initial step is made towards revision of the phylogeny of the order.  © 2005 The Linnean Society of London, Zoological Journal of the Linnean Society , 2005, 143 , 109–131.     

Systematics of African lowland rainforest Praomys (Rodentia, Muridae) based on molecular and craniometrical data

Representatives of the genus Praomys occur throughout the African intertropical zone. It is unclear how many species this genus contains, nor do we know the exact distribution ranges and phylogenetic relationships of these taxa. Using molecular (16S rRNA gene sequencing) and morphological (multivariate craniometry) analyses we clarify the taxonomy and phylogenetic relationships among the Praomys occurring in Africa's lowland tropical rainforests. We studied most species known from this area, based on specimens collected in seven countries (Guinea, Ivory Coast, Cameroon, Central African Republic, Gabon, Congo Republic and Democratic Republic of Congo). In our study, Praomys appears to be monophyletic. Our results identify two species complexes: the jacksoni complex includes at least two species ( P. jacksoni and P. mutoni ) and the tullbergi complex contains at least four species ( P. tullbergi , P. rostratus , P. misonnei , P. petteri ). Although the 16S rRNA gene appears insufficient to resolve the phylogenetic relationships among all the members of the tullbergi species complex, it is suitable for the identification of most of the studied species, and its use has allowed us to redefine the geographical limits of several species.  © 2005 The Linnean Society of London, Zoological Journal of the Linnean Society , 2005, 145 , 539–553.     

Taxonomy and palaeobiology of the largest-ever marsupial, Diprotodon Owen, 1838 (Diprotodontidae, Marsupialia)

To determine accurately the rates of late Pleistocene megafaunal loss, it is fundamentally important to have accurate taxonomic information for every species. In Australia, accurate taxonomic information is lacking for several Pleistocene groups, including the largest marsupial ever to live, Diprotodon Owen, 1838. Diprotodon taxonomy has been complicated by early nomenclatural problems and by the occurrence of two distinct size classes of individuals that do not reflect an ontogenetic series. Traditionally, the two size classes have been regarded as separate species. However, a taxonomic investigation of large samples (> 1000 teeth) of Diprotodon material from several different fossil localities in Queensland, New South Wales, South Australia and Victoria suggests that there is little evidence for the discrimination of more than one morphospecies. Thus, Diprotodon is here considered a monotypic genus and the single morphospecies, D. optatum Owen, 1838 is considered to have been highly sexually dimorphic. By drawing analogy with extant sexually dimorphic megaherbivores and marsupials, the large form was probably male, and the small form was probably female. Diprotodon optatum probably moved in small, gender-segregated herds, and exhibited a polygynous breeding strategy. As a single morphospecies, D. optatum had a near-continental geographical distribution, similar to that of extant megaherbivores, possibly indicating its niche as a habitat generalist.  © 2008 The Linnean Society of London, Zoological Journal of the Linnean Society , 2008, 153 , 389–417.     

The diversity and biogeography of koa-finches (Drepanidini: Rhodacanthis), with descriptions of two new species

All known populations of koa-finches, genus Rhodacanthis , became extinct in the Holocene epoch. Two new species are described here from Quaternary fossil sites in the Hawaiian Islands. One new species, from Kauai and Maui, is roughly the size of the historically known greater koa-finch ( R. palmeri ) but differs in having a more robust skull and in bill morphology. The second new species, from Oahu and Maui, is similar in size to the lesser koa-finch ( R. flaviceps ) but closer to R. palmeri in qualitative osteological traits. The two species of koa-finches known historically from the island of Hawaii are distinct in osteology from the fossil koa-finches on the older Hawaiian islands, indicating that at least two of the four known speciation events in the genus took place within approximately the past 500 kyr. However, the similarity of maxillae from Pleistocene and Holocene sites on Oahu suggests that the Oahu population maintained morphological stasis through the climate changes of the late Quaternary. The evidence that speciation occurred on the youngest island in the archipelago suggests that the process of community assembly on newly emergent Hawaiian landscapes was a stimulus to evolutionary diversification in Rhodacanthis .  © 2005 The Linnean Society of London, Zoological Journal of the Linnean Society , 2005, 144 , 527–541.     

Monophyly and phylogenetic placement of the spider genus Labulla Simon, 1884 (Araneae, Linyphiidae) and description of the new genus Pecado

The genus Labulla Simon is circumscribed in phylogenetic terms to include the species Labulla thoracica (Wider), L. flahaulti Simon and L. machadoi sp. nov. The genital anatomy of the genus is described in detail and the taxonomy of the genus is reviewed. The monophyly of Labulla is supported by numerous morphological apomorphies of the male palp and female epigynum. Based on a cladistic analysis, a new genus, Pecado gen. nov. , is erected to place Labulla impudica Denis, from Northern Africa. Lepthyphantes insularis Saito and ' Labulla ' nepula Tikader, both formerly included in Labulla , are not congeneric with the type species of Labulla .  © 2005 The Linnean Society of London, Zoological Journal of the Linnean Society , 2005, 143 , 359–404.     

The old wasp and the tree: fossils, phylogeny and biogeography in the Orussidae (Insecta, Hymenoptera)

The phylogenetic relationships of the fossil orussid taxa Mesorussus taimyrensis and Minyorussus luzzi are examined by analysing them together with a large data set compiled previously for the extant Orussidae. The fossils are placed in an unresolved trichotomy with the extant Orussidae. The phylogeny is used for evaluating the hypothesis that the ancestors of the family had reduced body size; the results of this analysis are inconclusive. The biogeographical history of the Orussidae is explored. The common ancestor of the family was probably widespread, the initial splitting events taking place prior to or coinciding with the separation of Laurasia from Gondwana. Later putative vicariance events can be correlated with the gradual breakup of Gondwana. However, the biogeographical history of the Orussidae is dominated by speciation within regions and dispersal. The minimum age of the common ancestor of the Orussidae is >180 Myr when estimated from the biogeographical pattern, >95 Myr when estimated from the phylogenetic position of the fossils; the earlier date is considered to be the most likely.  © 2004 The Linnean Society of London , Biological Journal of the Linnean Society , 2004, 82 , 139–160.     

Systematics and biogeography of the New World species of Trichadenotecnum Enderlein (Insecta: Psocodea: 'Psocoptera': Psocidae)

The taxonomy of the New World species of the genus Trichadenotecnum is revised. A total of 44 species, including 29 new species, were treated. These species are classified into 12 monophyletic species groups, eight of them newly proposed here. Two species previously assigned to Trichadenotecnum , T. pichincha New & Thornton and T. sylvaticum Turner, are recognized as not belonging to this genus. Phylogenetic relationships among 16 previously and presently proposed species groups are estimated based on a data matrix of 58 morphological characters. Trees from these analyses support monophyly of Trichadenotecnum and the proposed species groups. The New World species were divided into three major clades. Based on the phylogenetic hypothesis and distributional pattern of the species groups, the biogeographical history of the New World Trichadenotecnum is discussed.  © 2008 The Linnean Society of London, Zoological Journal of the Linnean Society , 2008, 153 , 651–723.     

Phylogeny and biogeography of Crinum L. (Amaryllidaceae) inferred from nuclear and limited plastid non-coding DNA sequences

The genus Crinum L. is the only pantropical genus of the Amaryllidaceae. Phylogenetic and biogeographical analyses of nrDNA ITS and plastid trnL-F sequences for all continental groups of the genus Crinum and related African genera are presented, with the genus Amaryllis used as outgroup. ITS indicates that C. baumii is more closely related to Ammocharis and Cybistetes than to Crinum sensu stricto . Three clades are resolved in Crinum s.s. One unites a monophyletic American group with tropical and North African species. The second includes all southern African species and the Australian endemic C. flaccidum . The third includes monophyletic Madagascar, Australasian and Sino-Himalayan clades, with southern African species. The trnL-F phylogeny resolves an American and an Asian/Madagscar clade, and confirms the relationship of C. flaccidum with species endemic to southern Africa. The salverform, actinomorphic perianths of subg. Crinum appear to have evolved several times in the genus from ancestors with zygomorphic perianths (subg. Codonocrinum ), thus neither subgenus is monophyletic. Biogeographical analyses place the origin of Crinum in southern Africa, as the region is optimized at all ancestral nodes in the tree topology, and in basal interior nodes of all but one of the major clades. The genus underwent three major waves of radiation corresponding to the three main clades resolved in our trees. Two entries into Australia for the genus are indicated, as are separate Sino-Himalayan and Australasian dispersal events.  © 2003 The Linnean Society of London, Botanical Journal of the Linnean Society , 2003, 141 , 349–363.     

Microsatellite DNA and behavioural studies provide evidence of host-mediated speciation in Myzus persicae (Hemiptera: Aphididae)

The fossil record of mammals records a major interchange of northern and southern faunas in the New World, upon closure of the Panamanian isthmus approximately 3 Mya, termed the Great American Biotic Interchange (GABI). Due to their poor preservation in the fossil record, the degree of participation of birds in this interchange remains largely unknown. A phylogeny for wrens of the genus Campylorhynchus (Aves: Passeriformes) was reconstructed using DNA sequences from the mitochondrial control region and cytochrome b gene. This phylogeny, in combination with biogeographical inference and molecular clock methods, allows estimates of the importance of Late Pliocene interchange to the history of the group. Biogeographical reconstructions and divergence date estimates suggest that the genus began diversification in North America prior to closure of the Panamanian isthmus, consistent with a hypothesized North American origin for the family Troglodytidae. These reconstructions are consistent with pre-GABI dispersal of at most a single Campylorhynchus lineage into South America, with subsequent dispersal of additional lineages, probably across the fully formed isthmus. Increased sampling of avian taxa with widespread New World distributions will continue to clarify the timing and direction of continental interchange.  © 2007 The Linnean Society of London, Biological Journal of the Linnean Society , 2007, 90 , 687–702.     

A new polypterid fish: Polypterus faraou sp. nov. (Cladistia, Polypteridae) from the Late Miocene, Toros-Menalla, Chad

Polypterus faraou sp. nov. (Cladistia, Polypteridae) from the Late Miocene of Toros-Menalla (western Djourab, Chad) is described on the basis of a subcomplete articulated skeleton preserved in three dimensions. This is the first time such a complete fossil polypterid skeleton has been described. It is the only verifiable fossil record for the genus Polypterus . P. faraou closely resembles P. bichir and P. endlicheri , extant fish found in the Chad–Chari system. Intrarelationships among the polypterids are not yet resolved: however, P. faraou shows a primitive shape of the body and a primitive shape of the opening of the lateral line on the scales, similar to that of three living species ( P. bichir , P. endlicheri and P. ansorgii ).  © 2006 The Linnean Society of London, Zoological Journal of the Linnean Society , 2006, 146 , 227–237.     

A conifer seedling with two herbicolous fungi from the Baltic amber forest

A Baltic amber inclusion of a fossil spruce seedling of which the lower part of the hypocotyl and the primary root are not preserved is provisionally described as Picea baltica ad int. The remnant of the hypocotyl and the basal parts of the cotyledons are infested by a conidial fungus. Its conidiophores correspond to those of the genus Gonatobotryum Corda. However, the fungus is not assignable to any extant species and is therefore described as a new species, Gonatobotryum piceae . A further infestation, most probably by a stroma-forming anamorph, is visible on the cotyledons of the seedling. Its mode of infestation is similar to that of Sirococcus strobilinus Preuss which occurs in extant spruce seedlings.  © 2007 The Linnean Society of London, Botanical Journal of the Linnean Society , 2007, 155 , 449–456.     

Phylogenetic relationships of the north-eastern Atlantic and Mediterranean blenniids

The phylogenetic relationships of 27 north-eastern Atlantic and Mediterranean blennioids are analysed based on a total of 1001 bp from a combined fragment of the 12S and 16S mitochondrial rDNA. The most relevant results with implications in current blenniid taxonomy are: (1) Lipophrys pholis and Lipophrys (=  Paralipophrys ) trigloides are included in a well-supported clade that by the rule of precedence must be named Lipophrys ; (2) the sister species of this clade are not the remaining species of the genus Lipophrys but instead a monotypic genus comprising Coryphoblennius galerita ; (3) the smaller species of Lipophrys were recovered in another well-supported and independent clade, which we propose to be recognized as Microlipophrys ; (4) although some authors included the genera Salaria and Lipophrys in a single group we have never recovered such a relationship. Instead, Salaria is more closely related to the genera Scartella and Parablennius ; (5) the genus Parablennius , which was never recovered as a monophyletic clade, is very diverse and may include several distinct lineages; (6) the relative position of Aidablennius sphynx casts some doubts on the currently recognized relationships between the different blenniid tribes. Meristic, morphological, behavioural and ecological characters support our results and are also discussed. The possible roles of the tropical West African coast and the Mediterranean in the diversification of blenniids are discussed.  © 2005 The Linnean Society of London, Biological Journal of the Linnean Society , 2005, 86 , 283–295.     

Curtisia (Cornales) from the Eocene of Europe and its phytogeographical significance

Fossil remains of Curtisia Aiton (Cornales) are recognized for the first time from the Tertiary of Europe, based on early Eocene anatomically preserved fruits from the London Clay and Poole Formations of southern England. The modern distribution of this monotypic genus is limited to the cape of South Africa. Curtisia quadrilocularis (Reid & Chandler) comb. nov. fruits have globose tetralocular endocarps composed of isodiametric sclereids with a single seed per locule, a prominent axial vascular canal, apical placentation, and four germination valves. All of these characters, as well as size, correspond to extant Curtisia . Although many fossil taxa from the Eocene of Europe have been shown to have their closest extant relatives in Asia, this occurrence of Curtisia highlights Tertiary floristic exchange between Europe and Africa. The newly recognized fossil occurrences suggest a Laurasian origin for Curtisia , in conformity with the fossil record for several other genera of the Cornales. In addition, our rejection of the former assignment of this species to Leucopogon causes us to question whether Epacridaceae were present in the Tertiary of Europe.  © 2007 The Linnean Society of London, Botanical Journal of the Linnean Society , 2007, 155 , 127–134.     

Towards a monophyletic genus Albinaria (Gastropoda, Pulmonata): the first molecular study into the phylogenetic position of eastern Albinaria species

Recent molecular phylogenetic studies of the terrestrial snail genus Albinaria have caused a radical reassessment of its taxonomy. These studies, however, were limited to western species. This paper examines mitochondrial 12S sequences and nuclear ITS1 & 2 sequences of both eastern and western species, and demonstrates that Albinaria, in its most recent definition, is not monophyletic. Both molecular datasets place ' Albinaria ' hedenborgi from Lebanon in a well-supported clade with species of the genus Cristataria , distributed south-east of the vicariant range of Albinaria . The remaining species from Cyprus, Turkey and Greece constitute a well-supported monophyletic group. These two clades form geographical clusters, whereas Albinaria in the current definition (including ' A. '  hedenborgi ) has a disjunct distribution. ' A.' hedenborgi should therefore be classified with Cristataria , together with the morphologically similar and geographically close ' A. '  nadimi .  © 2005 The Linnean Society of London, Zoological Journal of the Linnean Society , 2005, 143 , 531−542.     

Phylogeny and species boundaries in the gobiid genus Gnatholepis (Teleostei: Perciformes)

Species of the goby genus Gnatholepis Bleeker, 1874, are common inhabitants of shallow tropical seas worldwide. In this study, mitochondrial DNA sequence (ND2 gene), from 349 Gnatholepis individuals sampled from across the South and Central Pacific and Caribbean, is used to infer phylogeny and determine species boundaries. Seven species of Gnatholepis are recognized: the Indo-Pacific G. anjerensis (Bleeker, 1851) [ G. cauerensis (Bleeker, 1853) is a synonym]; G. scapulostigma Herre, 1953; G. davaoensis Seale, 1910; G. knighti Jordan & Evermann, 1903; G. gymnocara Randall & Greenfield, 2001; G.  sp. Randall & Greenfield, 2001; and the Atlantic/Caribbean G. thompsoni Jordan, 1904. Results from the molecular phylogeny are compared with a previous morphology-based revision of the genus in order to establish which morphological characters diagnose species in correspondence with the molecular phylogeny.  © 2004 The Linnean Society of London, Zoological Journal of the Linnean Society , 2004, 142 , 573–582.