Impacts of urbanization in a biodiversity hotspot: Conservation challenges in Metropolitan Cape Town

The City of Cape Town (City) covers 2460 km² in the southwestern corner of the Cape Floristic Region biodiversity hotspot. Established in 1654, by 1700 there were no animals larger than 50 kg within 200 km of the City. However, apart from an appreciation that timber and firewood were becoming scarce, it was only in the 1930s that the first farm near Cape Point was set aside for conservation. Table Mountain was declared a National Monument in 1958, while it was largely covered by pine and gum plantations. Conservation of the montane areas thereafter expanded, whereas the lowlands were largely ignored, except for a few bird sanctuaries. Only in 1982 was the plight of the lowlands highlighted. Although ad hoc conservation planning was undertaken subsequently, 1997 saw the first priority categorization and conservation plan. The current situation is perilous: a huge effort will be required to meet basic conservation targets for the lowland vegetation types and threatened species. Local and international partners and funders will be key to achieving this. In eight of the City's 19 national vegetation types the minimum conservation targets are not achievable. Of the 3250 plant species estimated to occur in the City, 13 are extinct and 319 are threatened according to the IUCN Red List: this is 18% of the threatened Red List species in South Africa. Now for the first time, implementation is being attempted holistically across the metropole with discussion between internal City and external stakeholders to implement the conservation plan. However, the interim plans towards achieving this — that 60% of the unproclaimed target is secured by 2014, requires that over 40 km² be conserved per annum. This leaves 340 km² that should be secured by 2020 when projections from City spatial growth indicate that the last critical remnants will be urbanized.     

Towards sustainable land use: identifying and managing the conflicts between human activities and biodiversity conservation in Europe

Conflicts between biodiversity conservation and human activities are becoming increasingly apparent in all European landscapes. The intensification of agricultural and silvicultural practices, land abandonment and other land uses such as recreation and hunting are all potential threats to biodiversity that can lead to conflicts between stakeholder livelihoods and biodiversity conservation. To address the global decline in biodiversity there is, therefore, a need to identify the drivers responsible for conflicts between human activities and the conservation of European biodiversity and to promote the management of these conflicts. Here, the drivers of biodiversity conflicts are analysed in a European context for five habitat types: agricultural landscapes, forests, grasslands, uplands and freshwater habitats. A multi- disciplinary approach to conflict management is described, with active stakeholder involvement at every stage of conflict identification and management as well as a range of other approaches including stakeholder dialogue and education, consumer education, improvement of political and legislative frameworks, financial incentives, and planning infrastructure.     

Conservation genetics in a globally changing environment: present problems,paradoxes and future challenges

Despite recent advances in conservation genetics and related disciplines and the growing impact that conservation genetics is having in conservation biology, our knowledge on several key issues in the field is still insufficient. Here we identify some of these issues together with addressing several paradoxes which have to be solved before conservation genetics can face new challenges that are appearing in the transitory phase from the population genetics into the population genomics era. Most of these issues, paradoxes and challenges, like the central dogma of conservation genetics, the computational, theoretical and laboratory experiment achievements and limitations in the conservation genetics field have been discussed. Further knowledge on the consequences of inbreeding and outbreeding depression in wild populations as well as the capacity of small populations to adapt to local environmental conditions is also urgently needed. The integration of experimental, theoretical and applied conservation genetics will contribute to improve our understanding of methodological and applied aspects of conservation genetics.     

The relationship between biodiversity and population centres: the high Andes region as an example

Several coarse-scale studies have demonstrated a positive correlation between biodiversity and human population density. In this paper this relationship is studied for part of the Andean highland, on a finer spatial scale than in earlier studies, and comparing bird distribution data with pre-Columbian as well as contemporary population centres. A particularly close correspondence was found between ancient population centres and high numbers of species with small distributions. This suggests that the growth of resident human cultures was related, in some way, to local factors which—over a much longer time-scale—stimulated the process of evolution of new species. This correspondence may be a consequence of climate moderation in the mountain areas leading to local persistence, of wild species as well as human communities. However, the result also suggests that we need to study to what extent high biodiversity as such, under certain conditions, yields environmental services which were important for people. It also suggests that traditional efforts to preserve biodiversity in wilderness areas with few people should be supplemented with efforts to promote a more sustainable development in the populated areas, allowing cloud forest and other biologically rich habitats to persist in suitable places near population centres.     

The Chilean coastal range: a vanishing center of biodiversity and endemism in South American temperate rainforests

Temperate forests of southern South America are globally important because of their high level of endemism. I argue here that within southern South America, rainforests of the Chilean Coastal Range should be the primary target for new conservation efforts. Historically, most protected areas in southern South America have been designated to preserve forests above 600 m, mainly in the Andes. However, Coastal Range forests have higher species richness and are under greater threat than Andean forests at similar latitudes. Coastal forests are characterized by the presence of numerous narrow-range endemics, among them two monotypic plant families. The higher frequency of endemic species in Coastal Range forests is attributed to its more stable biogeographic history compared to the Andes, particularly during the glacial events of the Quaternary. Due to the extent of human impact, the remaining fragments of coastal forests are quite distant from one another, and are disconnected from the larger protected areas of Andean forests. Only 439000 ha of Valdivian coastal forest still remain, including some remnants of primary forest. New private or public reserves should be created to protect the last remnants of continuous forest remaining on the Coastal Range of the Valdivian region (40–42° S). A different conservation strategy should be applied north of 40° S, where protected areas are too small and fragments are too scattered to maintain viable populations of most vertebrates. In this latter area, I recommend expanding existing reserves, restoring native forests, and interconnecting remnant forests through a corridor network.     

Terrestrial models and global change: challenges for the future

A wide variety of models have illustrated the potential importance of terrestrial biological feedbacks on climate and climate change; yet our ability to make precise predictions is severely limited, due to a high degree of uncertainty. In this paper, after briefly reviewing current models, we present challenges for new terrestrial models and introduce a simple mechanistic approach that may complement existing approaches.     

Enabling stem cell therapies for tissue repair: Current and future challenges

Stem cells embody the tremendous potential of the human body to develop, grow, and repair throughout life. Understanding the biologic mechanisms that underlie stem cell-mediated tissue regeneration is key to harnessing this potential. Recent advances in molecular biology, genetic engineering, and material science have broadened our understanding of stem cells and helped bring them closer to widespread clinical application. Specifically, innovative approaches to optimize how stem cells are identified, isolated, grown, and utilized will help translate these advances into effective clinical therapies. Although there is growing interest in stem cells worldwide, this enthusiasm must be tempered by the fact that these treatments remain for the most part clinically unproven. Future challenges include refining the therapeutic manipulation of stem cells, validating these technologies in randomized clinical trials, and regulating the global expansion of regenerative stem cell therapies.     

Phosphate transport in mitochondria: Past accomplishments,present problems,and future challenges

The requirement of inorganic phosphate (P_i) for oxidative phosphorylation in eukaryotic cells is fulfilled through specific P_i transport systems. The mitochondrial proton/phosphate symporter (P_ic) is a membrane-embedded protein which translocates P_i from the cytosol into the mitochondrial matrix. P_ic is responsible for the very rapid transport of most of the P_i used in ATP synthesis. During the past five years there have been advances on several fronts. Genomic and cDNA clones for yeast, bovine, rat, and human P_ic have been isolated and sequenced. Functional expression of yeast P_ic in yeast strains deficient in P_i transport and expression inEscherichia coli of a chimera protein involving P_ic and ATP synthase subunit have been accomplished. P_ic, in contrast to other members of the family of transporters involved in energy metabolism, was demonstrated to have a presequence, which optimizes the import of the precursor protein into mitochondria. Six transmembrane segments appear to be a structural feature shared between P_ic and other mitochondrial anion carriers, and recent-site directed mutagenesis studies implicate structure-functional relationships to bacteriorhodopsin. These recent advances on P_ic will be assessed in light of a more global interpretation of transport mechanism across the inner mitochondrial membrane.     

Rational design of new materials using recombinant structural proteins: Current state and future challenges

Sequence-definable polymers are seen as a prerequisite for design of future materials, with many polymer scientists regarding such polymers as the holy grail of polymer science. Recombinant proteins are sequence-defined polymers. Proteins are dictated by DNA templates and therefore the sequence of amino acids in a protein is defined, and molecular biology provides tools that allow redesign of the DNA as required. Despite this advantage, proteins are underrepresented in materials science. In this publication we investigate the advantages and limitations of using proteins as templates for rational design of new materials.     

Indigenous Medicine and Primary Health Care: The Importance of Lay Knowledge and Use of Medicinal Plants in Rural South Africa

Indigenous medicine is important to rural livelihoods, but lay knowledge and use of medicinal plants has not been extensively studied. Research in KwaZulu-Natal, South Africa, showed that medicinal plants were frequently used by villagers and contributed to their ability to cope with health problems. Knowledge of plants and household remedies was extensive and varied in that households often held different knowledge. Villagers mainly relied on common species, and were generally aware of alternative species for a certain ailment. People were flexible in their use of indigenous and western health care, which were both perceived as beneficial. Improved cooperation between health care systems could improve health standards. Extraction of medicinal plants has been described as unsustainable in the region—a situation not found in the study area. It is argued that conservation policies aimed to restrict access should be differential and potentially not include local consumption, since this may be ecologically unnecessary and entail local hardships.     

In vitro propagation of <Emphasis Type="Italic">Huernia hystrix</Emphasis>: an endangered medicinal and ornamental succulent

An efficient and rapid method for in vitro clonal propagation of Huernia hystrix was developed, resulting in shoot regeneration within 3 weeks of culture. This endangered medicinal and ornamental succulent is in high demand. Multiple shoots were regenerated from stem explants (10 mm length) cultured on Murashige and Skoog (MS) medium containing 3% sucrose and supplemented with a range of NAA (0.00–8.06 μM) and BA (4.44–22.19 μM) concentrations. A 100% shoot response with a multiplication rate of four shoots per explant was obtained on MS medium containing 5.37 μM NAA and 22.19 μM BA. Callus produced at the base of the explant on the same medium showed root organogenic potential. The in vitro regenerated shoots produced roots when transferred to half strength MS medium with or without auxin. The micropropagated plants were easily acclimatized within 2 months under greenhouse conditions when potted in a soil and sand mixture (1:1; v/v) treated with a fungicide (Benlate, 0.01%). More than 95% survival with no observable morphological variations was obtained. The developed protocol provides a simple, cost-effective means for the conservation of endangered H. hystrix by clonal propagation within a short time.     

Extinction threat evaluation of endemic fig trees of New Caledonia: Priority assessment for taxonomy and conservation with herbarium collections

This article focuses on the relationship between priority-setting in conservation and in taxonomy. A simple and generally applicable scheme is presented based on prior quantitative extinction threat evaluation. In the main part of the study we describe the assessment of the herbarium voucher collection date time series of 21 endemic fig tree species of Ficus sect. Oreosycea (Moraceae). The fig tree assessment is then compared with the available IUCN Red List data and with the collection information on two other groups of endemic tree radiations in New Caledonia: ebonies of Diospyros sect. Maba (Ebenaceae) and the Iguanura palm lineage (Arecaceae). We find a remarkably low level of extinction threat evident in Ficus but a pronounced need to differentiate between true species rarity and putative rarity of potential taxonomic artifacts. To this end it is proposed how such numerical evaluations can be used to set future priorities for the assessment or validation of the taxonomic and conservation status of taxa. The limitations and implications of the evaluation are discussed and relevant criteria for a meaningful analysis of collection records are listed. Finally, putting our results on woody plants into perspective, we briefly review the general conservation situation and outlook of New Caledonia, acknowledging both its high conservation priority and potential. Abbreviations: Note that different IUCN threat category classifications have been in use during the last decade and that some of the cited categories and their abbreviations have changed (IUCN 1994, 2001).     

Exploring biodiversity in a metropolitan area in the Mediterranean region: The urban and suburban flora of Rome (Italy)

This work provides an overview of plant diversity in the municipality of Rome (Italy) through an assessment of the flora in urban and suburban sectors of the city. It is aimed at providing the knowledge required to support proactive action for plant conservation. On the basis of a literature-derived catalogue and of an extensive survey campaign, the flora was investigated in terms of conservation interest; habitat types and locations that require protection measures were identified according to the occurrence of valuable native plants. Valuable species exclusive of the urban sector are threatened by the compaction trend affecting the urban fabric. Such species occur mainly in ruderal environments and fallows of archaeological sites and urban parks, near river courses and in remnants of natural forests. Valuable species exclusive of the suburban sector are threatened by urban sprawl. They occur prevalently in wet environments of the subcoastal strip and in coastal sands, Mediterranean maquis, tuffaceous gorges, sulphur springs and archaeological sites. The results highlight the need to preserve the complexity of the land mosaic, especially within the urban matrix, and to strengthen the existing environmental protection tools in the suburban area against foreseeable land cover changes.     

从民族生态学的角度探讨金平分水岭自然保护区周边民族对生物多样性的保护和利用

民族生态学是研究不同民族和社会如何与其自然环境中各个方面包括植物、动物、土地、森林和土壤等相互作用关系的一门科学。在云南东南部中越国境的金平分水岭国家级自然保护区周边各个民族包括拉祜族(苦聪人)、哈尼族、瑶族和苗族在长期与自然环境的相互作用中积累了认识、利用和保护自然环境及其资源的丰富的传统知识,也与自然环境建立了密切地相互依存的关系,并在其民族文化中具体反映。这些朴素的民族生态学的实践经验是生物多样性和文化多样性保护的一个不可分割有机整体。     

Population Dynamics, Resource Use, and Conservation Needs of the Delhi Sands Flower-loving Fly (Rhaphiomidas Terminatus Abdominalis Cazier) (Diptera: Mydidae), an Endangered Species

The Delhi Sands Flower-loving Fly (Rhaphiomidas terminatus abdominalis Cazier), the only Dipteran listed as endangered in the United States, is a large, nectar-feeding pollinator fly, found only in remnants of a sand dune ecosystem in southern California. A five-year observational study was conducted in a 3.7ha preserve. Legal and biological constraints limit accuracy of population data because marking individuals was not possible. The population on the preserve appeared to be stable over the period of observation. Little variation in number of flies observed from year to year was found. Spatial distribution of fly observations differed for each fly generation, but reasons for this are not clear. Distribution of male and female flies differed from each other most of the time. Understanding aspects of the fly's ecology and behavior and the ecosystem dynamics is necessary to effectively plan for conservation and recovery of the species. Preserves must provide all of the elements needed for continued survival of the species through maintenance of its dynamic habitat.     

Aerobic MTBE biodegradation: an examination of past studies, current challenges and future research directions

With the current practice of amending gasoline with up to 15% by volume MTBE, the contamination of groundwater by MTBE has become widespread. As a result, the bioremediation of MTBE-impacted aquifers has become an active area of research. A review of the current literature on the aerobic biodegradation of MTBE reveals that a number of cultures from diverse environments can either partially degrade or completely mineralize MTBE. MTBE is either utilized as a sole carbon and energy source or is degraded cometabolically by cultures grown on alkanes. Reported degradation rates range from 0.3 to 50 mg MTBE/g cells/h while growth rates (0.01–0.05 g MTBE/g cells/d) and cellular yields (0.1–0.2 g cells/g MTBE) are generally low. Studies on the mechanisms of MTBE degradation indicate that a monooxygenase enzyme cleaves the ether bond yielding tert-butyl alcohol (TBA) and formaldehyde as the dominant detectable intermediates. TBA is further degraded to 2-methyl-2-hydroxy-1-propanol, 2-hydroxyisobutyric acid, 2-propanol, acetone, hydroxyacteone and eventually, carbon dioxide. The majority of these intermediates are also common to mammalian MTBE metabolism. Laboratory studies on the degradation of MTBE in the presence of gasoline aromatics reveal that while degradation rates of other gasoline components are generally not inhibited by MTBE, MTBE degradation could be inhibited in the presence of more easily biodegradable compounds. Controlled field studies are clearly needed to elucidate MTBE degradation potential in co-contaminant plumes. Based on the reviewed studies, it is likely that a bioremediation strategy involving direct metabolism, cometabolism, bioaugmentation, or some combination thereof, could be applied as a feasible and cost-effective treatment method for MTBE contamination.     

The role of biodiversity for element cycling and trophic interactions: an experimental approach in a grassland community

The focus of a new experiment, set up in Jena in spring 2002, are the effects of biodiversity on element cycles and the interaction of plant diversity with herbivores and soil fauna. The experimental design explicitly addresses criticisms provoked by previous biodiversity experiments. In particular, the choice of functional groups, the statistical separation of sampling versus complementarity effects, and testing for the effects of particular functional groups differ from previous experiments. Based on a species pool of 60 plant species common to the Central European Arrhenatherion grasslands, mixtures of one to 16 (60) species and of one to four plant functional groups were established on 90 plots (20 m × 20 m) with nested experiments. In order to test specific hypotheses 390 additional small-area plots (3.5 m × 3.5 m) were set-up. Exact replicates of all species mixtures serve to assess the variability in ecosystem responses. In a dominance experiment, the effects of interactions among nine selected highly productive species are studied. Each species is grown as monoculture replicated once.Effekte der Biodiversität auf Elementkreisläufe und Wechselwirkungen der pflanzlichen Artenvielfalt mit Bodenfauna und Herbivoren stehen im Mitttelpunkt eines neuen Experiments, das im Frühjahr 2002 in Jena eingerichtet wurde. Das Versuchsdesign berücksichtigt ausdrücklich die Kritik, die an den Aufbau früherer Biodiversitätsversuche gerichtet wurde. Die Auswahl funktioneller Gruppen von Pflanzenarten, die statistischen Möglichkeiten, die Effekte des “Sampling” gegen Komplementarität zu trennen sowie den Einfluß funktioneller Gruppen zu überprüfen, unterscheiden dieses Experiment von früheren Versuchen. Sechzig typische Pflanzenarten der zentraleuropäischen Frischwiesen (Arrhenatherion) bilden den Artenpool für den Versuch. Auf 90 Flächen wurden Artenmischungen etabliert, die 1 bis 16 (60) Arten und 1 bis 4 funktionelle Gruppen dieser Pflanzenarten enthalten. Die Versuchsparzellen haben eine Größe von 20 m × 20 m, auf denen in genesteter Anordnung verschiedene Teilexperimente durchgeführt werden. Zusätzlich wurden 390 kleine Parzellen (3.5 m × 3.5 m) angelegt, um spezifische Hypothesen zu überprüfen. Alle Arten werden hier mit je einer Wiederholung als Monokulturen kultiviert. Identische Wiederholungen aller Artenmischungen sollen deren Variabilität untersuchen. In einem Dominanz-Versuch werden die Effekte der Wechselwirkungen zwischen 9 ausgewählten hochproduktiven Arten untersucht.     

Integrative taxonomy of New Caledonian beetles: species delimitation and definition of the Uloma isoceroides species group (Coleoptera,Tenebrionidae, Ulomini), with the description of four new species

New Caledonia is an important biodiversity hotspot with much undocumented biodiversity, especially in many insect groups. Here we used an integrative approach to explore species diversity in the tenebrionid genus Uloma (Coleoptera, Tenebrionidae, Ulomini), which encompasses about 150 species, of which 22 are known from New Caledonia. To do so, we focused on a morphologically homogeneous group by comparing museum specimens with material collected during several recent field trips. We also conducted molecular phylogenetic analyses based on a concatenated matrix of four mitochondrial and three nuclear genes for 46 specimens. The morphological study allowed us to discover and describe four new species that belong to the group of interest, the Uloma isoceroides group. Molecular analyses confirmed the species boundaries of several of the previously described species and established the validity of the four new species. The phylogenetic analyses also provided additional information on the evolutionary history of the group, highlighting that a species that was thought to be unrelated to the group was in fact a member of the same evolutionary lineage. Molecular species delimitation confirmed the status of the sampled species of the group and also suggested some hidden (cryptic) biodiversity for at least two species of the group. Altogether this integrative taxonomic approach has allowed us to better define the boundaries of the Uloma isoceroides species group, which comprises at least 10 species: Uloma isoceroides (Fauvel, 1904), Uloma opacipennis (Fauvel, 1904), Uloma caledonica Kaszab, 1982, Uloma paniei Kaszab, 1982, Uloma monteithi Kaszab, 1986, Uloma robusta Kaszab, 1986, Uloma clamensae sp. n., Uloma condaminei sp. n., Uloma jourdani sp. n., and Uloma kergoati sp. n. We advocate more studies on other New Caledonian groups, as we expect that much undocumented biodiversity can be unveiled through the use of similar approaches.     

早期形态发生:一种解决贻贝科(软体动物门:双壳纲)分类、系统发育和进化问题的方法

作者对贻贝科贝类的幼虫和幼贝期发育阶段形态结构的出现和变化顺序进行了研究,其约60个不同分类单元的个体发生可归纳为4种形态发生类型或模式。主要对3个形态发生区域的阶段形态结构的起源、发育变化和同源性做了研究。其一,即中央区域,开始形成于前双壳Ⅰ期(PD-Ⅰ),在某个分类单元它可以在前双壳Ⅱ期(PD-Ⅱ)和幼贝期(N)形成,而在其它分类单元则在前双壳Ⅱ期、幼贝期和双壳期(D)形成;第二区域,即背部后区,在幼贝期出现;第三区域,即背部前区,出现于双壳期。双壳期背部后区在某个分类单元起源于幼贝期的形态构造,在其它分类单元则可能起源于双壳期的形态构造。与在贻贝分类学上应用的成体特征相比,早期发育阶段中央和背部后区的形态结构显示出很明显的发育顺序或特征变化规律。根据以前人们熟知而尚未应用到分类和系统发育研究中的早期发育阶段形态特征,作者重新修订了Soot-Ryen的现生贻贝科种上阶元分类系统,重新提出了科内系统发育关系。修订的分类系统表明,Scarlato and Starobogatov(1984)提出的贻贝科各亚科由偏顶蛤亚科开始,沿4条系统发育路线演化发展,对应其早期发育阶段的4类形态发生类型或模式。     

Molecular phylogeny of the genus Gobio Cuvier, 1816 (Teleostei: Cyprinidae) and its contribution to taxonomy

The phylogenetic relationships among gudgeons that represent most nominal taxa within Gobio gobio sensu lato were examined by mitochondrial and nuclear genome sequencing. The molecular analyses confirmed the separate generic status of Gobio as a monophyletic group and revealed 15 Eurasian lineages divided into two main clades, the Northern European and the Ponto-Caspian. The validity of eleven nominal taxa as distinct species was confirmed, gudgeons from the Volga River basin were described as a new species G. volgensis, and three revealed phylogenetic lineages were submitted for a comprehensive revision as "species-in-waiting". The species G. gobio showed a wide range extending from the British Isles to the Black Sea coast and overlapped the areas of several other species. Four pure lineages were detected in the middle Danube River basin. The Crimean Peninsula was found to be a region with the occurrence of individuals of hybrid origin. This region will require special investigation to define species participating in hybridization events, and to establish further steps for the conservation of endemic native gudgeon species. A simple diagnostic method, based on different lengths of the PCR products, called "S7indel diagnostics" is presented for further taxonomic investigations in the genus Gobio.