The Taxonomic Status of Mico marcai (Alperin 1993) and Mico manicorensis (van Roosmalen et al. 2000) (Cebidae,Callitrichinae) from Southwestern Brazilian Amazonia

Species level taxonomic revisions of New World monkeys are scarce but necessary if we are to obtain a clear picture of this group’s diversity. In this work I revise taxonomically the little known marmoset Mico marcai¸ originally described as Callithrix argentata marcai Alperin, 1993, in light of more recently collected material. I show that this species is significantly different in facial pigmentation and pelage color from all other marmosets of the genus Mico in the Madeira–Tapajós interfluvium. The form first described as Callithrix manicorensis is treated as a junior synonym of Mico marcai, as there are no morphological differences or geographical barriers between the two putative taxa. Mico marcai occurs in the Aripuanã–Manicoré interfluvium, limited in the north by the Rio Madeira and in the south by enclaves of savannah vegetation. Mico marcai occurs in sympatry with Callibella humilis through at least part of its range, representing the only known case of sympatry of two species of marmoset. The northern range of Mico marcai is relatively undisturbed and has few human settlements, its southern limit, on the other hand, is crossed by a major Brazilian highway, and in the same region at least seven hydroelectric reservoirs are planned to be built.     

Rondon’s Marmoset, <Emphasis Type="Italic">Mico rondoni</Emphasis> sp. n., from Southwestern Brazilian Amazonia

We describe Rondon’s marmoset (Mico rondoni sp. n.) from the Rio Jamari in the Brazilian state of Rondônia and differentiate the species from other Amazonian marmosets on the basis of morphological, genetic, and zoogeographic characteristics. Mico rondoni sp. n. is a typical bare-eared marmoset of predominantly grayish coloration and unpigmented face and cheiridia, which contrasts clearly with its more brownish and pigmented parapatric congeners Mico melanurus and M. nigriceps. Genetically, the new species is unquestionably distinct from Mico emiliae, with which it had been synonimized previously. The geographic range of the new species is defined as the area delimited by the Mamoré, Madeira, and Jiparaná rivers to the west, north, and east, respectively, and the Serra dos Pacaás Novos, to the south, where it is substituted by Mico melanurus. Depending on its exact limits, this range may cover an area of little more than 100,000 km². A characteristic of the ecology of Mico rondoni sp. n. is its range-wide sympatry with the similarly sized tamarin Saguinus fuscicollis weddelli, which may be a key factor determining the rarity or absence of the new species from many areas within its geographic range. Its apparent scarcity may make the new species exceptionally vulnerable to the effects of the intense human colonization occurring throughout much of its known range, and provoke cause for concern for its long-term survival.     

Invasion spread of Operophtera brumata in northeastern United States and hybridization with O. bruceata

We used five methods to estimate the rate of spread of the winter moth, Operophtera brumata L., a European Lepidoptera, invading the northeastern USA and occasionally hybridizing with the closely related O. bruceata. These two species utilize the same sex attractant and pheromone traps capture both species. We estimated spread based on the ratio of the two species captured in pheromone-baited traps. Population boundaries were derived from captures in a grid of traps and spread was estimated as 6.6 km/year based on displacement of population boundaries between 2005 and 2008. Radial spread rate was also estimated as 6.9 km/year from the displacement of boundaries using logistic regression of trap captures along a single east–west transect of traps deployed yearly from 2007 to 2011. We also estimated the rate of spread from the expansion of defoliation mapped during aerial surveys. Based on the displacement of defoliation boundaries from 2005 to 2008, spread rate was estimated as 6.0 km/year. Based on the year of first defoliation, spread was estimated as 4.8 km/year and regression of the square-root of the cumulative area/π versus time yielded an estimate of 4.7 km/year. All five estimates were similar, and differences reflect the nuances of the data from which they were derived. We discuss here how the occasional hybridization with O. bruceata may be either retarding or enhancing O. brumata spread.     

New insights into the distribution and conservation status of the Golden-White Tassel-Ear Marmoset <Emphasis Type="Italic">Mico chrysoleucos</Emphasis> (Primates,Callitrichidae)

Among the 13 Mico species recognized by the IUCN Red List of Threatened Species, six are listed as “Data Deficient”. The geographic range of most of the Mico species has been estimated from only a few records. We report new localities and the geographic extension of Mico chrysoleucos. In addition, we confirmed the presence of the species in two distinct protected areas. We modeled the habitat suitability of M. chrysoleucos using the maximum entropy method and including new records obtained by the authors in the state of Amazonas, Brazil. From the total area of occurrence calculated for the species, 22.8% is covered by protected areas and indigenous lands. The annual mean deforestation rate estimated between 2000 and 2015 was 2.95%, and the total area deforested by 2015 was 3354 km² or 8.6% of the total distribution limits of the species. The habitat lost between 2000 and 2015 was 3.2% (1131 km²) of the total potential distribution, while the habitat loss area legally protected was 31 km², and the habitat loss in settlements was equal to 691 km². Our results extend the geographic distribution of the species about 100 km farther south, with the Maracanã River being a possible geographic barrier for the species. The significantly low rate of habitat loss inside protected areas and indigenous land, when compared to unprotected areas, points out the importance of these areas to M. chrysoleucos conservation. The species is relatively wide-ranging, legally protected, and resilient to regional anthropic threats. However, the hydroelectric schemes and the improvement of the road system in southern Amazonia pose an imminent threat to the species.     

Stephanorhinus hundsheimensis (Mammalia,Rhinocerotidae) from the late early Pleistocene deposits of the Denizli Basin (Anatolia,Turkey)

Pleistocene rhinoceroses are poorly documented in Turkey where they have been reported only from the late early Pleistocene (1.3–1.1 Ma) travertine deposits of the Denizli Basin. In this work, new rhinoceros remains collected from this basin are assigned to a relatively large-sized Stephanorhinus hundsheimensis on the basis of their morphology and morphometry. The first Turkish record of this species is approximately coeval with the first appearance of S. hundsheimensis in Europe, chronologically referred to the late early Pleistocene, ca. 1.2 Ma. During that time, S. etruscus still survived in Iberian Peninsula, central Italy and Dacian Basin. The presence of two successive evolutionary morphs for S. hundsheimensis during the Pleistocene is not confirmed.     

Potential distribution of endangered Mexican golden trout (<Emphasis Type="Italic">Oncorhynchus chrysogaster</Emphasis>) in the Rio Sinaloa and Rio Culiacan basins (Sierra Madre Occidental) based on landscape characterization and species distribution models

The Mexican Golden Trout (Oncorhynchus chrysogaster) is a threatened native species inhabiting three river basins in the Sierra Madre Occidental. Despite some efforts from science groups to obtain information about this trout, the Rio Sinaloa and Rio Culiacan basins, to the south, remain the least studied area, compared to the Rio Fuerte basin. To overcome this gap, a survey (2014 to 2015) was undertaken to obtain new records and confirm the presence for historic records in both watersheds. After filtering records for this species, eighteen locations were used to model potential distribution, using the GARP and MaxEnt, including landscape characterization based on hydrologic analysis and satellite imagery classification. Coincidence between models was >85% for a potential distribution area of 4300 km², defined by six bioclimatic and physiographic variables, with the hydrologic network covering 3000 km. To avoid overestimation, the final distribution area included only the 100 m fringe surrounding the drainage network and its associated landscape features. Jackknife resampling was used to validate both the models, successfully predicting more than 80% of the locations (p < 0.001). The estimated area covers 275 km², mainly defined by second- and third-order streams, at altitudes >2000 m, high water quality (transparent, dissolved oxygen >5 mg L-1; temperature < 26 °C), and was part of a matrix of undisturbed forests. This study provides new findings about this endangered species and new elements for designing appropriate monitoring programs supporting trout conservation and management.     

First record of Erysiphe quercicola (Ascomycota: Erysiphales) on species of Quercus subgenus Cyclobalanopsis (evergreen oaks,Fagaceae)

During the DNA sequence analyses of specimens on Quercus subgenus Cyclobalanopsis deposited as Erysiphe gracilis or Cystotheca wrightii, some specimens exhibited DNA sequences that are different from the sequences of the two species. Based on BLAST search and morphological observations, the true causal agent was identified as E. quercicola. This is the first record of E. quercicola on species of subgenus Cyclobalanopsis. Previous studies revealed that E. quercicola is plurivorous infecting a wide range of tropical fruit trees and woody plants. Further studies are needed to address the question as to why only E. quercicola infect species of subgenus Cyclobalanopsis.     

New material of Diacodexis (Mammalia,Artiodactyla) from the early Eocene of Southern Europe

Diacodexeidae are the first representatives of Artiodactyla in the fossil record. Their first occurrence is at the very base of the Ypresian (earliest Eocene, 56.0 Ma) with Diacodexis, a genus well diversified during the early Eocene in Europe, especially during the MP7–MP8 + 9 interval. However, most of European species are documented by scarce material, retrieved from single localities. In this work, we describe new Diacodexis material from ～MP7 and ～MP8 + 9 localities of Southern Europe, including material of D. antunesi from Silveirinha, considered as the most primitive European Diacodexis species, and material from three localities from Southern France (Fordones, Palette, and La Borie). The new material documents Diacodexis premolar morphology and deciduous dentition which bear potentially important phylogenetic information, as well as astragali, including a specimen from Silveirinha that constitutes the earliest occurrence of an astragalus of the genus Diacodexis in the European fossil record. Investigation of the enamel microstructure reveals that early European species had a simple enamel pattern with one-layered Schmelzmuster composed of ‘basic’ radial enamel only, instead of the two-layered Schmelzmuster (thin radial enamel + thick layer of Hunter-Schreger bands) observed on North American species and so far considered to represent the primitive condition within Artiodactyla. In accordance with previous studies, our observations highlight that Diacodexis gigasei from Belgium is morphologically closer to the North American species D. ilicis than to D. antunesi from Portugal. The latter species, together with D. aff. antunesi from Fordones, appears to be morphologically closer to the Asiatic taxa D. indicus and D. pakistanensis. Finally, we found numerous similarities between D. cf. gigasei from Palette and D. gigasei, a result that challenges the intra-European provincialism that characterizes the earliest Ypresian. Diacodexis gigasei could be one of the rare species shared by the northwestern and southwestern European bioprovinces.     

A new species of Caryospora Léger, 1904 (Apicomplexa: Eimeriidae) from the snake Philodryas olfersii Lichtenstein (Colubridae) from a coastal habitat in Brazil

A new coccidian species of the genus Caryospora Léger, 1904 (Protozoa, Apicomplexa, Eimeriidae) is reported from the colubrid snake host Philodryas olfersii Lichtenstein at a coastal area in the State of Rio de Janeiro, south-eastern Brazil. Oöcysts of Caryospora olfersii n. sp. are spherical to sub-spherical, 33.1 × 31.2 μm, with smooth, colourless, three-layered wall, c.1.4; middle layer lightly striated. Micropyle, oöcyst residuum and polar granule are all absent. Sporocysts are ovoid, 22.9 × 17.4 μm on average, with one extremity in the shape of a short neck. Stieda body present, 3.2 × 1.3 μm, sub-Stieda body present, homogeneous, larger than Stieda body, 4.5 × 1.7 μm. Sporozoites are inserted in a bulky sporocyst residuum.     

Contrasting patterns of genetic structure in Caryocar (Caryocaraceae) congeners from flooded and upland Amazonian forests

In the present study, we compare the genetic structure of a flooded forest tree Caryocar microcarpum and a terra firme forest tree Caryocar villosum in the lower Rio Negro region and test the hypothesis that the Rio Negro, the largest tributary on the left bank of the Amazon River, has been acting as a geographical barrier to gene flow between populations from the left and right banks. Seventeen adult individuals on the left bank and 27 on the right bank of Rio Negro were sampled for C. microcarpum, whereas 27 on the left and 20 on the right bank were sampled for C. villosum. Two chloroplast DNA regions were sequenced: the intron of trnL gene and the intergenic region between psbA and trnH genes; and all individuals were genotyped using ten microsatellite loci. The trnL intron and psbA‐trnH intergenic spacer generated fragments of 459 bp and 424 bp, respectively. For C. microcarpum, six haplotypes were identified for trnL and seven for psbA‐trnH. By contrast, only one haplotype was found for C. villosum for both sequences. The results obtained showed that the Rio Negro has not been a barrier to gene flow by pollen and seeds for either species. No genetic differentiation and a high migration rate between populations from the left and right banks of the Rio Negro were detected for the chloroplast sequences and nuclear microsatellites, for both C. villosum and C. microcarpum. Although the two analysed sequences showed a sharp topology difference, both indicated that multiple lineages may have contributed to the origin of C. microcarpum populations in the Rio Negro basin. Nevertheless, for C. villosum, from terra firme, the results obtained may provide evidence of a recent expansion of one maternal lineage from an ancient relic population surviving in one of the few moist forest refuges of the Guiana Shield during extended droughts of the glacial periods. We hypothesize that the contrasting environments colonized by this congener pair may have played an important role in shaping the genetic structure of both species. © 2009 The Linnean Society of London, Biological Journal of the Linnean Society, 2009, 98 , 278–290.     

Mitochondrial COII gene sequences provide new insights into the phylogeny of marmoset species groups (Callitrichidae,Primates)

Mitochondrial cytochrome oxidase II (COII) gene sequences (549 base pairs) were used to investigate the taxonomic relationships among 12 marmoset (Callithrix, Cebuella and Mico) taxa. A large number of substitutions were found in the third base codon positions, providing a strong phylogenetic signal in a gene coding a conserved protein. Despite the significant affinity between the 2 Amazonian genera Cebuella and Mico, found in recent molecular studies, the analysis presented here did not resolve convincingly the phylogenetic relationships between the 3 genera. Mico nevertheless formed 3 distinct clades, reflecting a basic division of species groups based on geographic distribution (east or west of the Rio Tapajós) rather than morphology (presence or absence of auricular hair). This supports the taxonomic distinction of the allopatric emiliae forms. In Callithrix, Callithrix aurita forms a distinct clade, but the remaining morphotypes form a somewhat contradictory cluster, possibly resulting from an extremely rapid radiation.     

Holocene vegetation history of the southern Levant based on a pollen record from Lake Kinneret (Sea of Galilee), Israel

Lake Kinneret, also known as the Sea of Galilee and Lake Tiberias, is located in the northeast of Israel. At a lake level of 211 m b.s.l. (below mean sea level), the central basin is 43 m deep. The maximum length of the lake is 21 km (N–S) and its maximum width is 12 km (W–E). Lake Kinneret’s surface area is 166 km². A new 17.8 m long sedimentary core was drilled in 2010. Here, we present the entire palynological record from it, which covers the last?~?9,000 years. Special emphasis is given to the natural and human-influenced vegetation history of Galilee in comparison to that of the more southerly Dead Sea region. Significant signs of human impact are the first Olea (olive) increase during the beginning of the Chalcolithic period between 7,000 and 6,500 years ago, as well as the prominent Olea phase during the Hellenistic/Roman/Byzantine period between 2,300 and 1,500 years ago. Mediterranean macchia and bathas scrub vegetation, as known in the area today, has developed in the southern Levant under human impact since the last ca. 1,500 years.     

Disjunct Occurrence of <Emphasis Type="Italic">Trichadenotecnum s.str</Emphasis>. in Southeastern Brazil (Psocodea: “Psocoptera”: Psocidae), with Description of a New Species

A new barklouse species belonging to the Trichadenotecnum s.str. clade (Psocodea: “Psocoptera”: Psocidae) was described from southeastern Brazil (Minas Gerais state). This locality is highly isolated (about 3400 km) from the closest known distributional range of this clade. It also represents the southernmost distributional record of Trichadenotecnum s.str. Phylogenetic placement of the species and biogeography of Neotropical Trichadenotecnum were briefly discussed. Trichadenotecnum punctipenne New, 1972 described from Brazil was synonymized with Trichadenotecnum pardus Badonnel, 1955.     

A new species of <Emphasis Type="Italic">Caryospora</Emphasis> Léger, 1904 (Apicomplexa: Eimeriidae) from the Guanabara spotted night snake <Emphasis Type="Italic">Siphlophis pulcher</Emphasis> (Raddi) (Reptilia: Dipsadidae) in the Atlantic Forest,Brazil

A new coccidian species of the genus Caryospora Léger, 1904 (Apicomplexa, Eimeriidae) is described based on material from the Guanabara spotted night snake Siphlophis pulcher (Raddi) (Reptilia: Dipsadidae) in a coastal area of the Atlantic Forest in Ilha Grande Island, state of Rio de Janeiro, southeastern Brazil. Caryospora ceadsensis n. sp. possesses spheroidal to slightly subspheroidal oöcysts measuring 17–24 × 17–24 (22.1 × 22.0) µm, with a c.1.3 µm thick bi-layered wall (inner layer smooth, outer layer slightly striated), length/width (L/W) ratio of 1.0–1.1 (1.0) and a highly refractive polar granule. Sporocysts are ellipsoidal, 11–17 × 10–13 (14.7 × 11.2) µm, with a L/W ratio of 1.0–1.5 (1.3), with a nipple-like Stieda body (1.1 µm high and 2.9 µm wide) and a large, bubble-shaped sub-Stieda body 1.7 µm high and 3.8 µm wide (1.0–2.0 × 3.0–4.5 µm). Sporocyst residuum composed of granules of differing sizes. Sporozoites with striations. This is the sixth record of a species of Caryospora in snakes of the family Dipsadidae in Brazil.     

Geographic distribution of genetic diversity in populations of Rio Grande Chub <Emphasis Type="Italic">Gila pandora</Emphasis>

In the southwestern United States (US), the Rio Grande chub (Gila pandora) is state-listed as a fish species of greatest conservation need and federally listed as sensitive due to habitat alterations and competition with non-native fishes. Characterizing genetic diversity, genetic population structure, and effective number of breeders will assist with conservation efforts by providing a baseline of genetic metrics. Genetic relatedness within and among G. pandora populations throughout New Mexico was characterized using 11 microsatellite loci among 15 populations in three drainage basins (Rio Grande, Pecos, Canadian). Observed heterozygosity (H_O) ranged from 0.71–0.87 and was similar to expected heterozygosity (0.75–0.87). Rio Ojo Caliente (Rio Grande) had the highest allelic richness (A_R = 15.09), while Upper Rio Bonito (Pecos) had the lowest allelic richness (A_R = 6.75). Genetic differentiation existed among all populations with the lowest genetic variation occurring within the Pecos drainage. STRUCTURE analysis revealed seven genetic clusters. Populations of G. pandora within the upper Rio Grande drainage (Rio Ojo Caliente, Rio Vallecitos, Rio Pueblo de Taos) had high levels of admixture with Q-values ranging from 0.30–0.50. In contrast, populations within the Pecos drainage (Pecos River and Upper Rio Bonito) had low levels of admixture (Q = 0.94 and 0.87, respectively). Estimates of effective number of breeders (N _b ) varied from 6.1 (Pecos: Upper Rio Bonito) to 109.7 (Rio Grande: Rio Peñasco) indicating that populations in the Pecos drainage are at risk of extirpation. In the event that management actions are deemed necessary to preserve or increase genetic diversity of G. pandora, consideration must be given as to which populations are selected for translocation.     

Plant and soil seed bank diversity across a range of ages of Eucalyptus grandis plantations afforested on arable lands

Aims

Plantation forests are often assumed to have reduced biodiversity relative to unmanaged forests. However, existing knowledge is based on studies of rotation-aged tree crops. We investigated how Eucalyptus afforestation of agricultural land affected plant species composition and biodiversity across a range of plantation ages (1–10 years). We also studied whether the soil seed bank could contribute to regeneration of existing vegetation in such plantations.

Methods

We used a chronosequence approach to evaluate plant and seed species composition and diversity in forests and soil seed banks. We also quantified the similarity of seed banks and aboveground vegetation within plantation sites of a given age. Plantation sites were also compared to a nearby, mature pine forest.

Results

Total plant species number, density and diversity in Eucalyptus grandis plantations increased for the first 3 years plantation establishment, then stabilized or decreased for the next 1–2 years and then increase significantly over the following years. Species number and density in soil seed bank increased significantly with plantation age only after an initial 6-year decrease. Shannon–Wiener index of total species diversity did not significantly differ with plantation age. The understory vegetation and soil seed bank were dominated by pioneer species in the first 3 years, but intermediate-successional and shade-tolerant species gradually invaded as plantations developed further. After 7 years, E. grandis plantation understories were composed of mainly shade-tolerant species. Nevertheless, the diversity of the diversity of intermediate-successional in soil seed banks were higher than that of shade-tolerant species in soil seed banks at this age range (7–10 year). Among species successfully germinated from soil seed banks, 48 % were not found in the aboveground plant community. Similarities between the species in the soil seed bank and the aboveground vegetation were low for both plantation and control forests and did not significantly change with plantation ages.

Conclusions

E. grandis likely produces a changing microclimate during plantation development, which in turn drives composition and diversity dynamics in understory vegetation and soil seed banks after the afforestation of agricultural land. The first 4 years after plantation establishment is associated with lower plant and soil seed bank diversity, meriting a greater focus on biodiversity stabilization and possibly longer rotation periods.     

Potential seed dispersal distances of native and non-native fleshy fruiting shrubs in the South African Mediterranean climate region

Bird flight distances for the small Zosterops capensis, the medium-size Pycnonotus capensis and the large Colius striatus were extracted from these birds’ initial ring and subsequent recapture locations and expressed on equivalent per km bases. The products of the bird-ring recapture records in nine different flight distance categories and daily consumption rates by these birds of seeds of two native (Chrysanthemoides monilifera and Olea europaea spp. africana) and two alien (Lantana camara and Solanum mauritianum) shrubs were used to construct seed dispersal curves. The dispersal distances to which ingested seeds were theoretically restricted were computed from the product of the retention time of seed in the birds’ guts and their flight speeds using published functions. All three bird species displayed thin long-tailed seed dispersal curves characterized by peaks at distances below 1 km which declined progressively with increasing distances, the tails extending to distances of up to 400 km. Flight distances corresponding with predicted seed gut retention times were 9.4 km in the small Z. capensis, 17.8 km in the medium size P. capensis and 21.2 km in the large C. striatus. These potential seed dispersal distances were much greater that the frequently reported long distance seed dispersal threshold of 1 km by frugivorous birds in fragmented landscapes.     

The nucleus of the lapillar otolith discriminates the early life stages of Boreogadus saida and Arctogadus glacialis

Polar cod (Boreogadus saida) and ice cod (Arctogadus glacialis) are sympatric on continental shelves of the Arctic Ocean. The larvae and early juveniles of the two species are similar, and discrimination based on morphology and pigmentation is uncertain. We present a discrimination criterion based on the difference in lapillus nucleus size between genetically identified B. saida (n = 441, 4.2–55.0 mm standard length) and A. glacialis (n = 82, 8.6–45.5 mm). The product of the shortest and longest diameters of the nucleus (SN × LN) was 58 % larger in A. glacialis than in B. saida. The logistic regression (Ln[p/(1 ? p)] = 0.02687SN × LN ? 17.5466), where p is the probability that the fish is A. glacialis, correctly reassigned 501 of the 523 fishes (96 %) used to build the model to their genetically determined species (99 % of B. saida and 80 % of A. glacialis). The same regression correctly classified 97 % of 189 fish sampled in 2002 and 2003 and not used in building the model (99 % of B. saida and 89 % of A. glacialis).     

Extension of the geographic range of Ateles chamek (Primates,Atelidae): evidence of river-barrier crossing by an amazonian primate

The black-faced black spider monkey (Ateles chamek) is endangered because of hunting and habitat loss. There are many gaps in our understanding of its geographic distribution. The Ucayali–Solimões–Amazon fluvial complex is currently recognized as the northern boundary of the species’ range, although published reports have indicated that it occurs north of the Rio Solimões. In this study we investigate published records, generate new field records, and assess the current information concerning the northern boundary of this species’ range. We conducted the study at the Mamirauá Sustainable Development Reserve in the central Brazilian Amazon, an area of 1,124,000 ha that consists entirely of Amazonian flooded forest (várzea). We collected data on the occurrence of the species from museum specimens and through field surveys, including interviews with local residents, direct observations, and the collection of new museum specimens. We confirmed the presence of A. chamek at 17 locations in the reserve, one of which was an island formed by a river bend cut-off that would have effectively taken any resident spider to the (new) north bank of the Solimões. We therefore conclude that fluvial dynamics were involved in creating the conditions for the dispersal and colonization of the species on the northern bank of the Rio Solimões. The data we present extends the known distribution of the species and increases its representation in protected areas.