微生物细胞连续培养过程中振荡和混沌行为的研究进展

本文对微生物细胞连续培养过程中产生振荡现象的条件,影响振荡特征（振幅和周期）的因素,振荡机理的研究和振荡行为的应用等进行了全面的论述,并指出了振荡研究的发展方向。     

系统方法分析NF-κB信号转导网络产生持续振荡的条件北大核心

振荡现象在生物系统中普遍存在,研究振荡现象对进一步了解细胞网络的基因调节功能具有重要意义。与实验研究相结合的系统分析方法为生物网络的振荡行为提供了新的研究途径。NF-κB是免疫应答、炎症反应和机体发育过程中的关键转录因子,近年的实验和计算研究揭示了细胞核内NF-κB浓度的衰减振荡现象。该文基于NF-κB信号转导网络的常微分方程数学模型,采用分岔分析方法研究分岔参数变化对系统振荡特性的影响,主要研究了系统能否产生等幅的持续振荡(又称极限环振荡)及其产生条件。经过系统化的单参数和双参数分岔分析发现:NF-κB在细胞核内的浓度能够在一定条件下产生极限环振荡,模型计算给出了产生极限环振荡的关键参数的范围。     

系统方法分析NF-κB信号转导网络产生持续振荡的条件

振荡现象在生物系统中普遍存在,研究振荡现象对进一步了解细胞网络的基因调节功能具有重要意义。与实验研究相结合的系统分析方法为生物网络的振荡行为提供了新的研究途径。NF-κB是免疫应答、炎症反应和机体发育过程中的关键转录因子,近年的实验和计算研究揭示了细胞核内NF-κB浓度的衰减振荡现象。该文基于NF-κB信号转导网络的常微分方程数学模型,采用分岔分析方法研究分岔参数变化对系统振荡特性的影响,主要研究了系统能否产生等幅的持续振荡(又称极限环振荡)及其产生条件。经过系统化的单参数和双参数分岔分析发现:NF-κB在细胞核内的浓度能够在一定条件下产生极限环振荡,模型计算给出了产生极限环振荡的关键参数的范围。     

海马神经振荡的产生机制和功能

神经元集群(neuronal ensemble)的节律性活动往往能诱导产生清晰可见的神经振荡,反映着该群神经元规则化和同步化的活动。通常依据频率可将神经振荡分为delta振荡(0.5~3 Hz)、theta振荡(4~12 Hz)、beta振荡(12~30 Hz)、gamma振荡(30~100 Hz)和尖波涟漪(sharp-wave ripples,SWR)(100 Hz的纹波叠加在0.01~3 Hz的尖波上)。这些神经振荡在人和动物的许多脑区中出现,常伴随着感觉、运动、睡眠等行为产生,在认知、学习和记忆巩固过程中发挥着至关重要的作用。本文简要回顾海马脑区神经振荡的研究历程,对其中的最重要的三种神经振荡——theta振荡、gamma振荡和SWR的产生机制、主要功能及各频率神经振荡的相互作用作出概述,并对今后的研究方向作出展望。     

细胞离子在振荡电磁场作用下的受力模型分析

本文通过生物细胞模型,研究振荡电场、振荡磁场以及振荡磁场产生的感应电场对细胞离子的作用机理。模型分析结果表明,电场力和罗仑兹力对细胞膜两侧的自由离子将产生加速度,振荡离子将产生周期性电位移。该模型同时也解释了脉冲电磁场比同参教的连续场产生更多的生物效应,以及连续场在开始施加和切除时的效应最大。     

一类具有时滞的生化反应模型的Hopf分支

在生物化工用肺炎杆菌与甘油转化为1,3-丙二醇的过程中会出现振荡现象,本文对出现振荡的机理进行了研究,根据生物意义,在模型中引入了时滞项,经分析和计算得到了产生Hopf分支的分支值以及分支值随控制参数变化的规律,并利用时滞微分方程的数值解法绘制了周期解的图形和相图。为这一过程的振荡机理研究提供了理论依据。并可用于指导工艺控制。     

视觉注意与神经振荡

人脑每时每刻都要接收大量视觉信息，由于人脑加工信息的能力有限，所以在较大视野内将注意分配给相关信息，同时抑制引起注意分散的不相关信息，对执行目标导向的行为至关重要。这种对视觉信息的选择性和主动性加工以适应当前目标的过程被称作视觉注意（visual attention），且视觉注意可分为自上而下的注意与自下而上的注意两种不同功能。由于来自大脑电信号的神经振荡活动在认知加工中发挥重要作用，已有研究综述了视觉注意与神经振荡（neural oscillation）的密切关系，但并未涉及不同的注意功能与神经振荡的关系。本文系统性调查了不同注意功能与神经振荡的关系，发现额-顶区域的theta频带振荡活动反映了自上而下的认知控制，而后部脑区的theta振荡与自下而上的注意相关。顶-枕区域alpha振荡的偏侧化有助于注意分配，而alpha频带的大规模同步促成了注意对视皮层自上而下的影响。Beta振荡介导了自上而下的信息与自下而上的信息之间的互动，作为信息载体促进了视觉信息处理。Gamma振荡则可能与自上而下和自下而上的注意间整合相关。本文就视觉注意功能与神经振荡关系的研究现状展开综述，旨在揭示不同的神经振荡活动在特定的视觉注意功能中的作用。     

与突触可塑性相关的神经振荡和信息流研究

作为一种有节律的神经活动,神经振荡现象发生在所有的神经系统中,例如大脑皮层、海马、皮层下神经核团以及感觉器官.本综述首先给出了已有的研究结果,即基于theta和gamma频段的同步神经振荡揭示了认知过程的起源与本质,如学习与记忆.然后介绍了关于神经振荡分析的新技术和算法,如表征神经元突触可塑性的神经信息流方向指数,并例...     

综述: 知觉相关的神经振荡-外界节律同步化现象

具有特定频率的节律性刺激能同步大脑内相应频率的神经振荡,使神经活动与外界刺激发生相位锁定,称之为神经振荡-外界节律同步化(neural entrainment).这种同步化的现象伴随着大脑内神经元集群兴奋水平的周期性波动,并与节律信息加工、知觉及注意等认知过程存在关联.得益于其非侵入、易操作以及能有效调控神经活动的特性,神经振荡-外界节律同步化成为了研究神经振荡与知觉和认知功能关系的有力手段,也为认知障碍诊断及干预提供了新的思路和方法.     

Electron-oscillatory spectra of pyrimidine bases of nucleic acids in argon matrices

The studies on the oscillatory structure of adsorption spectra of pyrimidine bases of nucleic acids isolated in Ar matrix at 11 K are described. To clear up the importance of molecule isolation in the matrix, amorphous films of the materials studied were investigated experimentally at 11 and 77 K. The work was carried out using the low temperature optic attachment developed by the authors. The long wavelength band of cytosine and deuterocytosine in the matrix is shown to consist of two bands: 1) lambda max = 267 nm with oscillatory progressions of 500 and 400 cm-1, respectively, and 2) lambda max = 280 nm with progression approximately 800 cm-1. The first pi pi*-absorption band of 1-methylcytosine has a single oscillatory progression 470 cm-1. Thymine and uracil in Ar matrices form diffuse structural spectra of 630 and 660 cm-1, respectively. The oscillatory progressions are attributed to the oscillatory frequencies of the pyrimidine molecule ring oscillations in the excited state. The annealing of the matrix results for all the materials in smearing the oscillatory molecule structure up to its complete vanishing. In film samples the oscillatory structure is not seen at low temperatures.     

ChTX induces oscillatory contraction in guinea pig trachea: role of cyclooxygenase-2 and PGE2

We examined the possible role of cyclooxygenase (COX) in charybdotoxin (ChTX)-induced oscillatory contraction in guinea pig trachea. Involvement of prostaglandin E(2) (PGE(2)) in ChTX-induced oscillatory contraction was also investigated. ChTX (100 nM) induced oscillatory contraction in guinea pig trachea. The mean oscillatory frequency induced by ChTX was 10.7 +/- 0.8 counts/h. Maximum and minimum tensions within ChTX-induced oscillatory contractions were 68.4 +/- 1.8 and 14.3 +/- 1.7% compared with K(+) (72.7 mM) contractions. ChTX-induced oscillatory contraction was completely inhibited by indomethacin, a nonselective COX inhibitor. Valeryl salicylate, a selective COX-1 inhibitor, did not significantly inhibit this contraction, whereas N-(2-cyclohexyloxy-4-nitro-phenyl)-methanesulfonamide, a selective COX-2 inhibitor, abolished this contraction. Exogenously applied arachidonic acid enhanced ChTX-induced oscillatory contraction. SC-51322, a selective PGE receptor subtype EP(1) antagonist, significantly inhibited ChTX-induced oscillatory contraction. Exogenously applied PGE(2) induced only a slight phasic contraction in guinea pig trachea, but PGE(2) induced strong oscillatory contraction after pretreatment with indomethacin and ChTX. Moreover, ChTX time-dependently stimulated PGE(2) generation. These results suggest that ChTX specifically activates COX-2 and stimulates PGE(2) production and that ChTX-induced oscillatory contraction in guinea pig trachea is mediated by activation of EP(1) receptor.     

Ca2+-activated K+ channel blockers induce PKC modulated oscillatory contractions in guinea pig trachea

Mechanisms underlying the Ca2+-activated K+ channel (K(Ca)) blockers-induced oscillatory contractions were investigated in guinea pig tracheal smooth muscle. The mean oscillatory frequencies induced by charybdotoxin (ChTX; 100 nM) and iberiotoxin (IbTX; 100 nM) were 9.8+/-0.8 (counts/h) and 8.0+/-1.3 (counts/h), respectively. Apamin (1 microM ), a blocker of SK(Ca), induced no contraction in guinea pig trachea and did not affect ChTX-induced oscillatory contractions. In Ca2+ free solution, no ChTX-induced contraction was observed. Nifedipine (100 nM), a blocker of voltage-dependent Ca2+ channels, and SK&F 96365 (10 microM), a blocker of capacitative Ca2+ entry, completely abolished ChTX-induced oscillatory contractions. Ryanodine (1 microM) decreased the amplitude, but increased the frequency of the oscillatory contractions. Thapsigargin (1 microM) changed contractions from the oscillatory type to the sustained type. Moreover, the protein kinase C (PKC) inhibitor, bisindolylamaleimide I (1 microM), decreased the amplitude and frequency, but PKC activator, phorbol 12-myristate 13-acetate (1 microM), increased the frequency of oscillatory contractions. These results suggest that K(Ca) inhibitors-induced oscillatory contractions are initiated by Ca2+ influx through L-type voltage-dependent Ca2+ channels. The ryanodine-sensitive calcium release channels in the sarcoplasmic reticulum may play an important role in maintaining the oscillatory contractions. Moreover, PKC activity modulates these oscillatory contractions.     

Response of continuous cultures to stimuli in glucose feed rate and dilution rate

The response of continuous cultures of yeast was investigated following step disturbances in glucose feed rate and dilution rate. The responses of the culture to the stimuli were oscillatory. The oscillatory responses were explained in terms of cell synchrony which was induced by the step change. An understanding of continuous cultures to stimuli was made possible with an appreciation of the inherently oscillatory events occurring in the single cell cycle between one mitosis and the next. Step changes in glucose feed rate and dilution rate induced a partial synchrony, which enabled the inherently oscillatory behavior of the individual cells to be made observable in the culture as a whole.     

Protein refolding in an oscillatory flow reactor

We demonstrate that an oscillatory flow reactor is a viable reactor for protein refolding via direct dilution. The mixing characteristics of the oscillatory flow reactor are well described and controllable and, importantly, can be scaled-up to process scale without a loss of mixing efficiency. This makes the oscillatory flow reactor an attractive alternative to conventional stirred-tank reactors for process-scale renaturation.     

Electrical oscillation and contact inhibition of reproduction in cells

The assumption that electrical oscillatory phenomena must be present during the cellular reproductive cycle is examined and found to be supported by the presently available evidence, mainly that on mouse cells.As a corollary, it suggests an electrically oscillatory aspect to the contact inhibition of growth, and three mechanisms for the invasiveness of cancer cells: changes in either the power level, degree of insulation, or frequency of the oscillatory phenomena associated with reproduction. The available evidence is in support of this, but much more is needed. A number of critical questions are presented.     

Robust Concentration and Frequency Control in Oscillatory Homeostats

Homeostatic and adaptive control mechanisms are essential for keeping organisms structurally and functionally stable. Integral feedback is a control theoretic concept which has long been known to keep a controlled variable robustly (i.e. perturbation-independent) at a given set-point by feeding the integrated error back into the process that generates . The classical concept of homeostasis as robust regulation within narrow limits is often considered as unsatisfactory and even incompatible with many biological systems which show sustained oscillations, such as circadian rhythms and oscillatory calcium signaling. Nevertheless, there are many similarities between the biological processes which participate in oscillatory mechanisms and classical homeostatic (non-oscillatory) mechanisms. We have investigated whether biological oscillators can show robust homeostatic and adaptive behaviors, and this paper is an attempt to extend the homeostatic concept to include oscillatory conditions. Based on our previously published kinetic conditions on how to generate biochemical models with robust homeostasis we found two properties, which appear to be of general interest concerning oscillatory and homeostatic controlled biological systems. The first one is the ability of these oscillators (“oscillatory homeostats”) to keep the average level of a controlled variable at a defined set-point by involving compensatory changes in frequency and/or amplitude. The second property is the ability to keep the period/frequency of the oscillator tuned within a certain well-defined range. In this paper we highlight mechanisms that lead to these two properties. The biological applications of these findings are discussed using three examples, the homeostatic aspects during oscillatory calcium and p53 signaling, and the involvement of circadian rhythms in homeostatic regulation.     

Oscillatory neural networks in the rabbit hippocampus

A model is described to account for damped oscillatory activity of two interacting neural populations, pyramidal cells and interneurons. This network in the hippocampus is treated as a lumped system with tine delays between elements. The physiological mechanism underlying the oscillatory activity appears to involve neural population interaction and cannot be described in terms of a network composed of but two neurons, a single pyramidal cell and a single interneuron. An unusual aspect of the model is the explicit incorporation of an ongoing background input to raise the mean level of activity of the pyramidal cell population. This model has evolved from a series of studies previously performed on cats. To test the model experiments were performed on rabbits. The data showing oscillatory activity following fornix stimulation in the rabbit indicate that the model can be applied not only to the cat but also to the rabbit. In additions, for commissural stimulation oscillatory potentials of neural populations and individual pyramidal cells were evoked as predicted by the model.     

Oscillatory deformation of human erythrocytes in sinusoidally modulated shear flow

The red cell deformation under oscillatory shear stress was studied. Shear stress was sinusoidally modulated between 8 and 32 dyn/cm2, thus, the extent of cellular deformation altered sinusoidally. At a low modulation frequency (less than 1.8 Hz), intact red cells perfectly responded to the shear stress applied on cells, and they could deform as much as the deformation in stationary shear flow. Above 2 Hz, the cellular deformation could not follow changes in shear stress along up-phase in the shear stress cycle. As decreasing the intracellular hemoglobin concentration, the cellular response to oscillatory shear stress became better. Treatment of cells with low concentrations of diamide impaired the response of intact cells to oscillatory shear stress, but unaffected the response of partially hemolyzed cells. These data suggest that the cellular response to oscillatory shear stress is determined by the cytoskeletal structure and the intracellular viscosity.     

Suppression of carbachol-induced oscillatory Cl- secretion by forskolin in rat parotid and submandibular acinar cells

Sympathetic stimulation induces weak salivation compared with parasympathetic stimulation. To clarify this phenomenon in salivary glands, we investigated cAMP-induced modulation of Ca(2+)-activated Cl(-) secretion from rat parotid and submandibular acinar cells because fluid secretion from salivary glands depends on the Cl(-) secretion. Carbachol (Cch), a Ca(2+)-increasing agent, induced hyperpolarization of the cells with oscillatory depolarization in the current clamp mode of the gramicidin-perforated patch recording. In the voltage clamp mode at -80 mV, Cch induced a bumetanide-sensitive oscillatory inward current, which was larger in rat submandibular acinar cells than in parotid acinar cells. Forskolin and IBMX, cAMP-increasing agents, did not induce any marked current, but they evoked a small nonoscillatory inward current in the presence of Cch and suppressed the Cch-induced oscillatory inward current in all parotid acinar cells and half (56%) of submandibular acinar cells. In the current clamp mode, forskolin + IBMX evoked a small nonoscillatory depolarization in the presence of Cch and reduced the amplitude of Cch-induced oscillatory depolarization in both acinar cells. The oscillatory inward current estimated at the depolarized membrane potential was suppressed by forskolin + IBMX. These results indicate that cAMP suppresses Ca(2+)-activated oscillatory Cl(-) secretion of parotid and submandibular acinar cells at -80 mV and possibly at the membrane potential during Cch stimulation. The suppression may result in the weak salivation induced by sympathetic stimulation.