The role of parental and hybrid species in multiple introgression events: evidence of homoploid hybrid speciation in Centaurea (Cardueae,Asteraceae)

Molecular approaches have greatly increased the number of confirmed homoploid hybrids, which suggests that the frequency of this phenomenon was underestimated in the past because it was much more difficult to detect than allopolyploidy. Centaurea is a suitable model group for studying homoploid speciation, as hybridization events have been commonly reported for this genus. Based on this, here we study Centaurea × forsythiana, a naturally occurring homoploid hybrid between two Sardinian endemics, C. horrida and C. filiformis, using a molecular approach involving nuclear and plastid markers, to understand the underlying population dynamics between homoploid hybrids and their parents. Our results confirm that C. × forsythiana is a hybrid between the above‐mentioned species and define the roles of the parents. Plastid markers point towards C. horrida as the maternal progenitor, and nuclear markers reveal that the other parental species, C. filiformis, is itself an old, stabilized homoploid hybrid related to the C. paniculata complex from the Italian mainland. Homoploid hybrid speciation is discussed and C. × forsythiana and C. filiformis are compared with other similar examples. The study confirms the importance of introgression between parental species mediated by hybrids and its potential implications in conservation. Furthermore, it shows how hybridization studies become even more complex when the parents are themselves of probable hybrid origin. © 2014 The Linnean Society of London, Botanical Journal of the Linnean Society, 2014, 175 , 453–467.     

NATURAL INTERSPECIFIC HYBRIDIZATION IN EASTERN NORTH AMERICAN CLAYTONIA

The eastern North American spring ephemeral Claytonia virginica (Portulacaceae) is well known for its great variation in chromosome number. The origin and significance of this cytological diversity has been a source of some controversy over the last two decades; in particular it has been suggested that one major source of variation could have arisen by allopolyploidy following hybridization between C. virginica and the second eastern North American representative of the genus, C. caroliniana. However, there has been no rigorous demonstration of natural hybridization between these taxa, and attempts to document hybridity have been hampered by a paucity of distinguishing morphological characters. Nuclear ribosomal gene markers are, however, able to distinguish between the two species and provide a means of identifying hybrid plants. We have found a locality in central New York state where the two species cooccur; in this population, hybrid individuals with additive ribosomal gene patterns are found in a zone of overlap between the two parental species. These hybrids are morphologically intermediate and have reduced pollen stainabilities, and appear to be F₁ individuals.     

Isozyme evidence of the parental origin and possible fertility of the hybrid Potamogeton×fluitans Roth

 The hybrid Potamogeton×fluitans Roth is thought to have resulted from hybridization between P. lucens L. and P. natans L. This hybrid has only been recorded at a few locations in the British Isles. At most of these sites the number of individuals found have been quite low. The one exception to this being a population in the Moors River, Dorset and South Hampshire, England, where a substantially larger population exists. Using seven different enzyme systems, this study provided support for the putative parental origin of this hybrid. In addition, the population in the Moors River was shown to contain numerous multi-locus phenotypes suggesting that these individuals may be partially fertile and may backcross to one of its parental species, or alternatively undergo selfing or crossing to produce an F₂ generation. Received December 1, 2000 Accepted June 20, 2001     

Comparative analysis of micromorphological characters in two distantly related Mexican oaks, Quercus conzattii and Q. eduardii (Fagaceae), and their hybrids

Interspecific hybridization occurs with high frequency in the genusQuercus, but few studies have analyzed and compared micromorphological characters in putative parental species and their hybrids.Quercus eduardii andQ. conzattii are two Mexican black oak species that, although distantly related, have formed at least one population of hybrid origin, where individuals with intermediate macromorphology are present. The purpose of this investigation was to analyze the degree of differentiation in micromorphological characters between the two species and to assess the expression of these characters in individuals with intermediate macromorphology. Foliar trichomes, epicuticular waxes, stomata, and pollen grains, were examined using scanning electron microscopy (SEM) in the three types of individuals (Q. conzatti, Q. eduardii, and intermediates). Trichome density was quantified with light microscopy. Types of trichomes present, length of trichome arms, types of epicuticular wax on the leaf surfaces, and the position of stomata with respect to the foliar surface were characters useful to differentiate betweenQ. conzattii andQ. eduardii. Plants with intermediate macromorphology displayed a pattern of micromorphological characters that were identical to one parental species (Q. conzattii), or extreme or novel relative to both species.     

Is a new invasive herb emerging? Molecular confirmation and preliminary evaluation of natural hybridization between the invasive Sphagneticola trilobata (Asteraceae) and its native congener S. calendulacea in South China

Sphagneticola trilobata is an invasive herb in South China. Here, we reported some morphological intermediates between S. trilobata and the indigenous congener S. calendulacea in the field for the first time, which were suspected to be hybrids. Morphological and molecular methods were used to test this hybrid origin hypothesis, and eco-physiological parameters were measured to evaluate the hybrid??s invasion potential. The hybrid origin hypothesis was confirmed by analysis of microsatellite and nrITS sequences. Bayesian assignment analysis based on six microsatellite loci genotypes separated the studied individuals into three groups, which corresponded to the two parent species and the putative hybrids that were identified on the basis of leaf morphology. The hybrid individuals were categorized as F1 hybrids with membership coefficients (Q_i values) close to 0.5. Phylogenetic analysis based on nrITS data showed that the putative hybrid individuals possessed two types of species-level divergent clones, and were inseparate with S. trilobata clade and S. calendulacea clade, respectively. The maternally-inherited chloroplast marker atpB-rbcL demonstrated that the invasive species functioned as the pollen donors. Ecophysiological studies on photosynthesis, specific leaf area (SLA), leaf nutrient concentration, and construction cost in the parental species and the hybrid demonstrated that the hybrid showed slightly lower or equivalent growth potential compared to the invasive species and significant higher energy-use efficiency than both parents. As such, it seems that a new invasive herb is emerging. As a consequence of this hybridization, the native species S. calendulacea may be disappearing rapidly, which presents a major concern for conservation efforts.     

Morphological and molecular (RAPD) analyses confirm the hybrid origin of the diploid grassCalamagrostis longiseta var.longe-aristata (Gramineae)

To examine the hybrid origin of the diploid grassCalamagrostis longiseta var.longe-aristata, we performed morphometric and genetic analyses of this taxon and its putative parental taxa. The morphometric analyses revealed that, in general,C. longiseta var.longe-aristata is morphologically intermediate betweenC. longiseta var.longiseta andC. fauriei. Previous studies have reported that some hybrids exhibit transgressive characters but others do not; the latter is the case forC. longiseta var.longe-aristata. Their absence may be due to the ecological adaptation to environments intermediate between those inhabited by the putative parental taxa, and therefore the transgressive characters have not been selected. Nevertheless, there is no direct evidence for adaptive value of the characters examined in this study and only a small part of all characters potentially responsible for adaptation was investigated. An alternative hypothesis about the absence of transgressive characters inC. longiseta var.longe-aristata is that it is at an early stage of hybrid speciation. Random amplified polymorphic DNA (RAPD) analyses showed that individuals ofC. longiseta var.longe-aristata were placed in both of the clusters formed by each putative parental taxon. Greater genetic diversity was observed inC. longiseta var.longe-aristata than in its putative parental taxa. All here reported findings support the scenario thatC. longiseta var.longe-aristata is of hybrid origin, having evolved fromC. longiseta var.longiseta andC. fauriei.     

Molecular and cytological evidences for the natural wheatgrass hybrids occurrence and origin in west China

Interspecies hybridization has been frequently observed in the tribe Triticeae. Natural hybridization between Kengyilia and Roegneria or Elymus species has not been reported as yet. Several sterile wheatgrass individuals exhibiting intermediately morphological traits between Kengyilia and Roegneria or Elymus species were identified in the meadow of Sichuan and Gansu provinces in China, suggesting their natural hybrid origin. The putative hybrids were analyzed by using the sequences of ITS and trnH-psbA together with cytological observation in order to assess the origin of hybrids. Both ITS and cytological data revealed the evidence of allopolyploid origin and confirmed the presence of StStYYP and StStYYHP genomes in the putative natural hybrids. The data suggest that the StStYYP hybrid originated from hybridization between Kengyilia and Roegneria and the hybrid with StStYYHP originated from hybridization between Kengyilia and Elymus. Chloroplast sequence data demonstrated that K. rigidula and K. melanthera were the likely maternal donors in the hybridization events.     

Asymmetric introgression between Magnolia stellata and M. salicifolia at a site where the two species grow sympatrically

In order to understand the ongoing evolutionary relationships between species, it is important to elucidate patterns of natural hybridization. In the zone where two species are sympatrically distributed, we examined 274 individuals of Magnolia stellata, Magnolia salicifolia, and their putative hybrids by means of 16 nuclear and three chloroplast microsatellite markers. Hybrid classes of individuals were estimated by admixture analyses. Morphological traits were also investigated for 64 of the 274 individuals. Admixture analyses revealed that 66 of the 274 individuals were classified as hybrids, comprising 17 F₁ and 19 F₂ individuals, 27 backcrosses to M. salicifolia, and 3 individuals of unknown origin. Morphological data from the 64 individuals agreed well with their genetic admixture rates. Spatial locations of F₁ and F₂ hybrids at the study site were intermediate between the two purebred species, indicating that the site preferences of hybrids are intermediate. The occurrences of F₂ and backcross hybrids indicate that F₁ hybrids are fertile. The chloroplast DNA haplotypes of all F₁ hybrids corresponded to those detected in M. salicifolia, so that maternal parents of the F₁ hybrids were all M. salicifolia. Furthermore, no hybrid individuals derived from a backcross to M. stellata were detected. These results suggest that the direction of hybridization and the subsequent introgression have been quite asymmetric and that the introgression occurred from M. stellata into M. salicifolia.     

Transgressive character expression in hybrid zones between the native invasives Tithonia tubaeformis and Tithonia rotundifolia (Asteraceae) in Mexico

Natural hybridization frequently promotes gene introgression among closely related species in sympatric populations, producing complex patterns of morphological variation. Therefore, a detailed understanding of the dynamics of interspecific gene flow and its morphological patterns is of widespread interest. We tested if introgressive hybridization promotes an increase in transgressive characters in comparison with the parental species. A sunflower species complex occurring in Mexico formed by two native invasive species, Tithonia tubaeformis and Tithonia rotundifolia, was analyzed using 46 morphological characters (leaf, flower and fruit) in five hybrid zones (N = 150 individuals) and two pure sites for each parental species (N = 80 individuals). In general, T. tubaeformis differed significantly from T. rotundifolia in all the examined characters, except six foliar and one inflorescence character. Morphological characters support the hypothesis of hybridization in this complex, even though both species remain morphological distinct in mixed stands. Individual hybrids appear to be a mosaic of parent-like (24.8 % of traits), intermediate (26.1 %) and transgressive (37.8 %) phenotypes (the remaining 11.3 % of the traits did not differ significantly from both parental species). Our results suggest that individuals from the same parental species were more similar among themselves than to putative hybrids, indicating occasional hybridization with segregation in hybrid types or backcrossing to parents. Evidence indicates a unidirectional pattern of gene flow toward T. rotundifolia.     

Morphological and ploidy level variation ofCentaurea phrygia agg. (Asteraceae) in the Czech Republic, Slovakia and Ukraine

Centaurea phrygia agg. was studied in part of Central Europe (Czech Republic, Slovakia and Ukraine) to evaluate its karyological and morphological variation. Three ploidy levels were found: diploid (C. pseudophrygia, C. stenolepis and several populations ofC. phrygia s.str.), tetraploid (C. oxylepis and several populations ofC. phrygia s.str.), and triploid (very rare, only single individuals). Only one taxon,C. phrygia s.str., comprises populations of two ploidy levels, but they seem to be geographically separated. Multivariate morphometric analysis confirmed the separation of the four taxa; the length and the width of appendages of middle involucral bracts, visibility of appendages of inner involucral bracts, the length and the width of an involucre, and the length/width ratio of middle cauline leaves are the most important discriminant characters. Several populations intermediate between two species (eitherC. pseudophrygia andC. stenolepis orC. oxylepis andC. phrygia s.str.) were found. Their possible origin from introgressive hybridization is discussed considering their morphology (intermediate between putative parental species), chromosome numbers (always the same as in putative parents), and distribution (both spatially and ecologically more or less intermediate between distribution ranges of putative parents). A determination key for the four studied species, including intermediates, is also presented.     

Molecular identification of natural mangrove hybrids of Rhizophora in Peninsular Malaysia

Natural hybridization is common in plants. Very often, the identity of a putative hybrid is inferred based on the observation of morphological features intermediate between two possible parental species occurring in a specific location. However, due to plasticity of morphological features and the co-occurrence of more than two possible parental species, molecular markers would be most useful to establish the origin of a putative hybrid. In mangroves, three Rhizophora species (Rhizophora apiculata, Rhizophora mucronata, and Rhizophora stylosa) and two putative hybrids (Rhizophora × lamarckii and Rhizophora × annamalayana) are distributed in the Indo-West Pacific region. Leaf samples of Rhizophora were obtained from two locations in Peninsular Malaysia, namely, Bagan Lalang and Pulau Burung, where all three species grow in sympatry. We analyzed sequences of one chloroplast and six nuclear DNA regions. Our results confirmed earlier claims that the morphologically identified putative hybrids growing in Pulau Burung are R. × lamarckii, a cross between R. apiculata and R. stylosa. Our data also pointed to the possible discovery of a new Rhizophora hybrid—a cross between R. mucronata and R. stylosa—the identification of which would have been difficult based on morphological features alone. The directions and the stages of hybridization are also discussed.     

Consequences of hybridization between Ohomopterus insulicola and O. arrowianus (Coleoptera, Carabidae) in a segmented river basin: parallel formation of hybrid swarms

A putative hybrid zone between flightless earabid beetles, (iambus (Ohomopterus) insulicola and C. (0.) arrowianus nakamurai in the Ina Valley, central Honshu. Japan, was studied using experimental hybridization and morphological analysis. The principal morphological character analysed was a functional part of the male genitalia (the eopulatory piece), which is also the key diagnostic character in taxonomy. The habitat of the earabid beetles is fragmented by the Tenryu River, which runs through the Ina Valley, and its tributaries. Ohomopterus insulicola and 0. a. nakamurai occur in the upstream and downstream areas of the river basin, respectively, and a putative hybrid swarm (0. insulicola ssp. pseiidinsulkola) is found in the boundary area on the cast side of the Tenryu River. Experimental hybridization between 0. insulicola and 0. a. nakamurai resulted in F₁ offspring that were morphologically similar to 0. i. pseudinsulicola. Pre‐zygotic reproductive isolation was incomplete, although the F₁ males had a dysfunction in sperm production and were almost sterile. Only a single F₁ pair produced F₂, Backcrosses of F₁ females of males of the parental species resulted in offspring that were similar to the parental species in genital morphology. Based on the discriminant function for the shape of the eopulatory piece resulting from the experimental hybridization, we demonstrate that similar hybrid swarms exist on both sides of the Tenryu River, but in locations 25 km apart. This demonstrates parallelism in hybridization events with similar consequences. The hybrid swarms consisted of beetles with intermediate morphological characters and did not contain obvious parental forms. The establishment of such intermediate populations may have been facilitated by selection for fertile hybrids in segregated local sites in the absence of frequent immigration of parental species. This study suggests that a segmented river basin provides an opportunity for establishing novel evolutionary lineages resulting from hybridization.     

Hybridization between the endemic brown algae Carpophyllum maschalocarpum and Carpophyllum angustifolium (Fucales): Genetic and morphological evidence

Hybridization is an important evolutionary process, which can have significant effects on biodiversity. While hybridization is well known in plants, less is known about the prevalence of hybridization in other kingdoms. Hybridization in the field has been confirmed in brown algae in a few cases, mainly in the northern hemisphere genus Fucus. Putative hybrids have been found in the New Zealand endemic species Carpophyllum angustifolium and Carpophyllum maschalocarpum. We used nuclear‐encoded molecular data (ITS2) and morphometrics to confirm hybridization between C. angustifolium and C. maschalocarpum. Putative hybrid thalli were collected that had heterozygous ITS2, each copy corresponding to one of the parental species from that population. Morphological analysis also showed that the three classes (two parental species and hybrids) were easily distinguishable in these populations. It was found that the hybrids had an intermediate morphology to the parent species. Some individuals with C. angustifolium morphology had hybrid ITS2 ribotypes suggestive of backcrossing between the hybrids and C. angustifolium. Our data reveal another case of hybridization within the Fucales and suggests that further research on how these species remain separate is needed.     

Biochemical and Molecular Characterization of Some Centaurea Species Growing in the Eastern Anatolia Region of Turkey

Random amplified polymorphic DNA (RAPD) and fatty acid (FAME) profiles were used to examine phenotypic and genetic relationships among 16 Centaurea species growing wild in the eastern Anatolia region of Turkey. Thirteen decamer primers were used to examine polymorphism. According to the RAPD results, 99 amplicons in the size range of 50–1000 bp were produced from 13 primers in 16 Centaurea species. Genetically four distinct groups were determined among the species of Centaurea, which represents high genetic variation. In the 16 species, 14 fatty acids were determined according to FAME results. Both FAME and RAPD results showed that C. virgata is genetically different from other species. The differences in the composition of fatty acids among Centaurea species suggest that fatty acid profiles could be used to differentiate among some of these species. Results of this study show that RAPD and FAME analyses are consistent.     

On the identity of a Centaurea population on Procida Island,Italy: Centaurea corensis rediscovered

The discovery on the Island Procida (Gulf of Naples, off the Italian west coast) of a Centaurea population similar to C. corensis, a narrow-range Sardinian endemic hitherto known only from one single locality in Sardinia, is presented here. The identification of the two populations as C. corensis is confirmed by morphological comparison and morphometric analysis, chromosome counts and nuclear ribosomal DNA sequence data. A recent origin of the species through polyploidization is hypothesized. Finally, the possibility that recent anthropogenic dispersal may account for the disjunction is discussed.     

Hybridization between insular endemic and widespread species of Viola in non-disturbed environments assessed by nuclear ribosomal and cpDNA sequences

Viola jaubertiana Marès & Vigin. is a narrow endemic violet of the Balearic Islands, restricted to small, fragmented, and scattered populations living in inaccessible rocky places and calcareous overhangs. V. jaubertiana is entirely glabrous and morphologically very uniform. However, several authors have reported hairy individuals collected at the type locality, suggesting that these rupicolous, pubescent plants are putative hybrids with V. alba Bess. subsp. dehnhardtii (Ten.) W. Becker, a woodland violet growing in the area. Ribosomal ITS sequences of the putative hybrids analysed showed additive species-specific sites of V. alba subsp. dehnhardtii and V. jaubertiana, strongly supporting its hybrid origin from these progenitors. CpDNA sequences of all putative hybrids were uniform, and identical to those present in V. jaubertiana accessions. This suggests that the gene flow between V. alba subsp. dehnhardtii and V. jaubertiana is unidirectional and identifies the endemic V. jaubertiana as the unique ovule donor. The additivity of the ITS sequences, together with the pollen and ovule sterility, suggests that the sampled individuals are primary F₁ hybrids, whereas no trace of introgressive hybridization or hybrid zone has been evidenced by the nuclear and plastid markers used. Judging from herbarium sheets, hybridization between V. alba subsp. dehnhardtii and V. jaubertiana is recurrent and dates back from the XIXth century. Hybrids between these species are not linked to disturbed environments. In fact, they have been always reported in rupicolous habitats, where the maternal species is restricted.     

Hybrid speciation in sparrows I: phenotypic intermediacy,genetic admixture and barriers to gene flow

Homoploid hybrid speciation is thought to require unusual circumstances to yield reproductive isolation from the parental species, and few examples are known from nature. Here, we present genetic evidence for this mode of speciation in birds. Using Bayesian assignment analyses of 751 individuals genotyped for 14 unlinked, nuclear microsatellite loci, we show that the phenotypically intermediate Italian sparrow (Passer italiae) does not form a cluster of its own, but instead exhibits clear admixture (over its entire breeding range) between its putative parental species, the house sparrow (P. domesticus) and the Spanish sparrow (P. hispaniolensis). Further, the Italian sparrow possesses mitochondrial (mt) DNA haplotypes identical to both putative parental species (although mostly of house sparrow type), indicating a recent hybrid origin. Today, the Italian sparrow has a largely allopatric distribution on the Italian peninsula and some Mediterranean islands separated from its suggested parental species by the Alps and the Mediterranean Sea, but co‐occurs with the Spanish sparrow on the Gargano peninsula in southeast Italy. No evidence of interbreeding was found in this sympatric population. However, the Italian sparrow hybridizes with the house sparrow in a sparsely populated contact zone in the Alps. Yet, the contact zone is characterized by steep clines in species‐specific male plumage traits, suggesting that partial reproductive isolation may also have developed between these two taxa. Thus, geographic and reproductive barriers restrict gene flow into the nascent hybrid species. We propose that an origin of hybrid species where the hybrid lineage gets geographically isolated from its parental species, as seems to have happened in this system, might be more common in nature than previously assumed.     

Interspecific hybridization in natural populations ofCyrtandra (Gesneriaceae) on the Hawaiian Islands: Evidence from RAPD markers

Interspecific hybridization among Hawaiian species ofCyrtandra (Gesneriaceae) was investigated using randomly amplified polymorphic DNA (RAPD) markers. Thirty-three different primers were used to investigate interspecific hybridization for 17 different putative hybrids based on morphological intermediacy and sympatry with putative parental species. RAPD data provided evidence for the hybrid origin of all putative hybrid taxa examined in this analysis. However, the patterns in the hybrid taxa were not found to be completely additive of the patterns found in the parental species. Markers missing in the hybrid taxa can be attributed to polymorphism in the populations of the parental species and the dominant nature of inheritance for RAPD markers. Unique markers found within hybrid taxa require further explanation but do not necessarily indicate that the taxa are not of hybrid origin. The implications suggest that these interspecific hybridization events had, and continue to have, an effect on the adaptive radiation and conservation biology ofCyrtandra.     

Extensive Hybridization and Introgression between Melastoma candidum and M. sanguineum

Natural hybridization can lead to various evolutionary outcomes in plants, including hybrid speciation and interspecific gene transfer. It can also cause taxonomic problems, especially in plant genera containing multiple species. In this study, the hybrid status of Melastoma affine, the most widespread taxon in this genus, and introgression between its putative parental species, M. candidum and M. sanguineum, were assessed on two sites, Hainan and Guangdong, using 13 SSR markers and sequences of a chloroplast intergenic spacer. Bayesian-based STRUCTURE analysis detected two most likely distinct clusters for the three taxa, and 76.0% and 73.9% of the morphologically identified individuals of M. candidum and M. sanguineum were correctly assigned, respectively. 74.5% of the M. affine individuals had a membership coefficient to either parental species between 0.1 and 0.9, suggesting admixture between M. candidum and M. sanguineum. Furthermore, NewHybrids analysis suggested that most individuals of M. affine were F2 hybrids or backcross hybrids to M. candidum, and that there was extensive introgression between M. candidum and M. sanguineum. These SSR data thus provides convincing evidence for hybrid origin of M. affine and extensive introgression between M. candidum and M. sanguineum. Chloroplast DNA results were consistent with this conclusion. Much higher hybrid frequency on the more disturbed Guangdong site suggests that human disturbance might offer suitable habitats for the survival of hybrids, a hypothesis that is in need of further testing.     

Molecular evidence for hybridization in Colias (Lepidoptera: Pieridae): are Colias hybrids really hybrids?

Gene flow and hybridization among species dramatically affect our understanding of the species as a biological unit, species relationships, and species adaptations. In North American Colias eurytheme and Colias eriphyle, there has been historical debate over the extent of hybridization occurring and the identity of phenotypically intermediate individuals as genetic hybrids. This study assesses the population structure of these two species to measure the extent of hybridization and the genetic identity of phenotypic intermediates as hybrids. Amplified fragment length polymorphism (AFLP) marker analysis was performed on 378 specimens collected from northern California and Nevada. Population structure was inferred using a Bayesian/Markov chain Monte Carlo method, which probabilistically assigns individuals to genetic clusters. Three genetic clusters provided the best fit for the data. C. eurytheme individuals were primarily assigned to two closely related clusters, and C. eriphyle individuals were mostly assigned to a third, more distantly related cluster. There appeared to be significant hybridization between the two species. Individuals of intermediate phenotype (putative hybrids) were found to be genetically indistinguishable from C. eriphyle, indicating that previous work based on the assumption that these intermediate forms are hybrids may warrant reconsideration.