Mutation and nuclear stage in Schizosaccharomyces pombe I. An experimental approach to the role of recombination in mutation induction

A reverse mutation system using G1 and G2 cells of Schizosaccharomyces pombe is described. In order to enable the system to deal with the problem of mutation dependence on recombination, tests were performed on (i) the homogeneity of cell populations with respect to nuclear stage; (ii) the fate of cells during post-irradiation incubation; (iii) the colony-forming ability of G1 and G2 revertants, and (iv) cell viability on the mutation plates. On the basis of the results, it is thought that, using this system, information can be obtained on the role of recombinational events in the process of mutation induction.     

Functional Plant Traits and Species Assemblage in Pyrenean Snowbeds

In mid-latitude mountains, snowbeds often consist of small, scattered alpine belt units that host many plants of high biogeographic interest. Because most snowbed species are weak competitors, it is important to study the dissemination and persistence of their seeds to better understand their population dynamics. This study analyzed the snowbed flora of the Central Pyrenees using 11 morpho-functional traits, mostly related to seed function. The seeds of most plants found in snowbeds are small or very small, they have ovoid to elliptical shapes, and have no attributes related to dispersal. When only snowbed specialists (i.e., with a phytosociological optimum in snowbed habitats) are considered, three strategy groups become apparent: i) annuals or pauciennials producing abundant small seeds prone to accumulate in the soil; ii) chamaephytes or hemicryptophytes that produce anemochorous seeds; and iii) other perennials – mainly hemicryptophytes – with no specific seed traits. In the first two groups, the extant populations are maintained either by permanent soil seed banks or by means of vegetative persistence and dispersal. The lack of specific traits in the third group suggests that these plants could be more sensitive to direct competitive exclusion from non-chionophilous species under a changing climatic scenario in which snowbeds tend to disappear.     

Interplay of Intrinsic and Synaptic Conductances in the Generation of High-Frequency Oscillations in Interneuronal Networks with Irregular Spiking

High-frequency oscillations (above 30 Hz) have been observed in sensory and higher-order brain areas, and are believed to constitute a general hallmark of functional neuronal activation. Fast inhibition in interneuronal networks has been suggested as a general mechanism for the generation of high-frequency oscillations. Certain classes of interneurons exhibit subthreshold oscillations, but the effect of this intrinsic neuronal property on the population rhythm is not completely understood. We study the influence of intrinsic damped subthreshold oscillations in the emergence of collective high-frequency oscillations, and elucidate the dynamical mechanisms that underlie this phenomenon. We simulate neuronal networks composed of either Integrate-and-Fire (IF) or Generalized Integrate-and-Fire (GIF) neurons. The IF model displays purely passive subthreshold dynamics, while the GIF model exhibits subthreshold damped oscillations. Individual neurons receive inhibitory synaptic currents mediated by spiking activity in their neighbors as well as noisy synaptic bombardment, and fire irregularly at a lower rate than population frequency. We identify three factors that affect the influence of single-neuron properties on synchronization mediated by inhibition: i) the firing rate response to the noisy background input, ii) the membrane potential distribution, and iii) the shape of Inhibitory Post-Synaptic Potentials (IPSPs). For hyperpolarizing inhibition, the GIF IPSP profile (factor iii)) exhibits post-inhibitory rebound, which induces a coherent spike-mediated depolarization across cells that greatly facilitates synchronous oscillations. This effect dominates the network dynamics, hence GIF networks display stronger oscillations than IF networks. However, the restorative current in the GIF neuron lowers firing rates and narrows the membrane potential distribution (factors i) and ii), respectively), which tend to decrease synchrony. If inhibition is shunting instead of hyperpolarizing, post-inhibitory rebound is not elicited and factors i) and ii) dominate, yielding lower synchrony in GIF networks than in IF networks.     

Multiple Regenerative Strategies of Short-Lived Species: An Effect on Geographical Distribution, Preference of Human-Made Habitats and Invasive Status

It is expected that plant species with multiple regenerative strategies have a wider ecological amplitude and geographical distribution. However there is still an anxious question why species with multiple regenerative strategies are not more frequent. In the presented work we asked whether short-lived plants with a potential bud bank i) have a wider geographical distribution, ii) occur more frequently in human-made habitats and iii) more frequently possess invasive status in comparison with the short-lived species without this additional regenerative strategy. Results show that short-lived plants with a potential bud bank are i) more widely geographically distributed, ii) under-represented in natural habitats and weakly over-represented in habitats disturbed by human activities and iii) contrary to expectation, less numerous among neophytes than species without a potential bud bank. This suggests that short-lived root-sprouters are more habitat-specialized when compared with such plants without adventitious bud-bank formation, but are more widely geographically distributed. A higher frequency of multiple regeneration strategies seems to be restricted by costs of having this ability in habitats or situations without a disturbance regime.     

Habitat split as a driver of disease in amphibians

Anthropogenic habitat disturbance is fundamentally altering patterns of disease transmission and immunity across the vertebrate tree of life. Most studies linking anthropogenic habitat change and disease focus on habitat loss and fragmentation, but these processes often lead to a third process that is equally important: habitat split. Defined as spatial separation between the multiple classes of natural habitat that many vertebrate species require to complete their life cycles, habitat split has been linked to population declines in vertebrates, e.g. amphibians breeding in lowland aquatic habitats and overwintering in fragments of upland terrestrial vegetation. Here, we link habitat split to enhanced disease risk in amphibians (i) by reviewing the biotic and abiotic forces shaping elements of immunity and (ii) through a spatially oriented field study focused on tropical frogs. We propose a framework to investigate mechanisms by which habitat split influences disease risk in amphibians, focusing on three broad host factors linked to immunity: (i) composition of symbiotic microbial communities, (ii) immunogenetic variation, and (iii) stress hormone levels. Our review highlights the potential for habitat split to contribute to host-associated microbiome dysbiosis, reductions in immunogenetic repertoire, and chronic stress, that often facilitate pathogenic infections and disease in amphibians and other classes of vertebrates. We highlight that targeted habitat-restoration strategies aiming to connect multiple classes of natural habitats (e.g. terrestrial–freshwater, terrestrial–marine, marine–freshwater) could enhance priming of the vertebrate immune system through repeated low-load exposure to enzootic pathogens and reduced stress-induced immunosuppression.     

Chimpanzee population structure in Cameroon and Nigeria is associated with habitat variation that may be lost under climate change

Background

The Nigeria-Cameroon chimpanzee (Pan troglodytes ellioti) is found in the Gulf of Guinea biodiversity hotspot located in western equatorial Africa. This subspecies is threatened by habitat fragmentation due to logging and agricultural development, hunting for the bushmeat trade, and possibly climate change. Although P. t. ellioti appears to be geographically separated from the neighboring central chimpanzee (P. t. troglodytes) by the Sanaga River, recent population genetics studies of chimpanzees from across this region suggest that additional factors may also be important in their separation. The main aims of this study were: 1) to model the distribution of suitable habitat for P. t. ellioti across Cameroon and Nigeria, and P. t. troglodytes in southern Cameroon, 2) to determine which environmental factors best predict their optimal habitats, and 3) to compare modeled niches and test for their levels of divergence from one another. A final aim of this study was to examine the ways that climate change might impact suitable chimpanzee habitat across the region under various scenarios.

Results

Ecological niche models (ENMs) were created using the software package Maxent for the three populations of chimpanzees that have been inferred to exist in Cameroon and eastern Nigeria: (i) P. t. troglodytes in southern Cameroon, (ii) P. t. ellioti in northwestern Cameroon, and (iii) P. t. ellioti in central Cameroon. ENMs for each population were compared using the niche comparison test in ENMtools, which revealed complete niche divergence with very little geographic overlap of suitable habitat between populations.

Conclusions

These findings suggest that a positive relationship may exist between environmental variation and the partitioning of genetic variation found in chimpanzees across this region. ENMs for each population were also projected under three different climate change scenarios for years 2020, 2050, and 2080. Suitable habitat of P. t. ellioti in northwest Cameroon / eastern Nigeria is expected to remain largely unchanged through 2080 in all considered scenarios. In contrast, P. t. ellioti in central Cameroon, which represents half of the population of this subspecies, is expected to experience drastic reductions in its ecotone habitat over the coming century.

Electronic supplementary material

The online version of this article (doi:10.1186/s12862-014-0275-z) contains supplementary material, which is available to authorized users.     

Demographic and genetic connectivity: the role and consequences of reproduction,dispersal and recruitment in seagrasses

Accurate estimation of connectivity among populations is fundamental for determining the drivers of population resilience, genetic diversity, adaptation and speciation. However the separation and quantification of contemporary versus historical connectivity remains a major challenge. This review focuses on marine angiosperms, seagrasses, that are fundamental to the health and productivity of temperate and tropical coastal marine environments globally. Our objective is to understand better the role of sexual reproduction and recruitment in influencing demographic and genetic connectivity among seagrass populations through an integrated multidisciplinary assessment of our present ecological, genetic, and demographic understanding, with hydrodynamic modelling of transport. We investigate (i) the demographic consequences of sexual reproduction, dispersal and recruitment in seagrasses, (ii) contemporary transport of seagrass pollen, fruits and seed, and vegetative fragments with a focus on hydrodynamic and particle transport models, and (iii) contemporary genetic connectivity among seagrass meadows as inferred through the application of genetic markers. New approaches are reviewed, followed by a summary outlining future directions for research: integrating seascape genetic approaches; incorporating hydrodynamic modelling for dispersal of pollen, seeds and vegetative fragments; integrating studies across broader geographic ranges; and incorporating non‐equilibrium modelling. These approaches will lead to a more integrated understanding of the role of contemporary dispersal and recruitment in the persistence and evolution of seagrasses.     

Can We Distinguish Plant Species that are Rare and Endangered from Other Plants Using Their Biological Traits?

Understanding the factors responsible for species rarity is crucial for effective species conservation. One possible approach to obtaining information about causes of species rarity is to compare rare and common species. We analyzed the biological and ecological traits of critically endangered (CR) plant species of the Czech Republic. We compared the vegetative, generative and ecological traits of CR species with: i) common closely related species (a form of phylogenetic correction), ii) common closely related species sharing the same habitat (i.e., excluding pairs not sharing the same habitat, because many differences in species traits can be caused by adaptation to a specific habitat type) and iii) all plants of the Czech Republic. Information about species traits was mainly obtained from literature and databases. Comparison with common closely related species showed that CR species are smaller, flower for shorter periods, and have higher proportions of self-compatibility and higher terminal velocities. CR species also differ in their mode of dispersion, and their ecology and distribution. Comparison with species from the same habitat gave similar results. Comparison with the whole flora produced slightly different results, with additional differences in pollination mode and seed mass. The results of all three types of comparison suggest that critically endangered species of the Czech Republic are small, competitively inferior species, with some differences in the generative part of their life cycle, and occur mainly in open, unproductive habitats.     

New insights into the chemical biodiversity of Minthostachys mollis in Argentina

Variations in the chemical composition of the essential oils of Minthostachys mollis Griseb. (Lamiaceae) collected in their natural habitat in Argentina were determined using GC-FID-MS analysis. Seventy five samples collected out of 40 wild plant populations in the Central and Northwestern Argentina during four years sampling, were analyzed. Principal Component Analysis was made on the chemical data showing that samples from Córdoba and San Luis belonged to the typical menthone – pulegone chemotype in accordance with previous reports; meanwhile samples from Tucumán, Salta and Catamarca showed the presence of different compositions, some previously unreported, mainly those detected in Tucumán province. In addition, cluster analysis was applied using Euclidean distance to measure the dissimilarity in the relative composition of samples from Tucumán, Salta and Catamarca, using Ward's method as the agglomeration technique. Five groups were retained with less than 10% of information loss: i) dihydrocarvone-carvone, ii) pulegone with absence of menthone, iii) carvacryl acetate-carvacrol, iv) limonene and v) linalool.It is worth mentioning that the compositions of the different chemotypes remained constant throughout the four years of collection and despite the highly diverse pattern of compositions revealed in this search, the typical chemotype was not found present northwards Córdoba and San Luis provinces. This is the first report of a deep study on natural populations of peperina throughout the whole distribution area in Argentina with consecutive sampling repetitions of the same populations during several years.     

Symposium on mammalian radiation genetics,July 7–9th, 1970 summary and synthesis

Papers given at the Symposium on Mammalian Radiation Genetics are summarized and discussed under three headings: (i) those helping to bridge the gap between what we know about genetic damage in the mouse and what we need to know in man; (ii) analytical studies on mice; (iii) assessment of genetic hazards from various sources.     

Neophyte Invasion in Moldavia (Eastern Romania) in Different Habitat Types

The actual state of neophyte invasion in Moldavia (Eastern Romania) is described in this paper on the basis of 11,055 phytosociological relevés. We analyzed the i) proportion of relevés with neophytes, ii) mean proportion of neophytes per relevés, and iii) mean coverage of neophytes per relevé for 36 EUNIS habitat types to identify general plant invasion patterns. The level of invasion differed considerably between habitats. The invasion of neophytes especially affected habitats strongly determined or influenced by man, such as anthropogenic woodlands, ruderal habitats, arable lands or trampled areas. Most natural habitats are either slightly invaded or entirely free of neophytes. Only riverine willow stands and wet tall-herb stands are relatively highly invaded. However, the absence of neophytes in some natural habitats less represented in the phytosociological dataset could be of artifactual nature. No significant relationship between the number of neophytes and non-neophytes was found in the analysis across different habitats. When the analyses were made within-habitats, both negative and positive relationships were found, which confirm that the relationship between alien and native species richness depends on the habitats. A total number of 105 neophyte species were recorded in the phytosociological relevés used in this study. Among these, 13 species that are currently considered invasive in Moldavia occur in at least 10 types of habitats.     

Reading and Visual Search: A Developmental Study in Normal Children

Studies dealing with developmental aspects of binocular eye movement behaviour during reading are scarce. In this study we have explored binocular strategies during reading and during visual search tasks in a large population of normal young readers. Binocular eye movements were recorded using an infrared video-oculography system in sixty-nine children (aged 6 to 15) and in a group of 10 adults (aged 24 to 39). The main findings are (i) in both tasks the number of progressive saccades (to the right) and regressive saccades (to the left) decreases with age; (ii) the amplitude of progressive saccades increases with age in the reading task only; (iii) in both tasks, the duration of fixations as well as the total duration of the task decreases with age; (iv) in both tasks, the amplitude of disconjugacy recorded during and after the saccades decreases with age; (v) children are significantly more accurate in reading than in visual search after 10 years of age. Data reported here confirms and expands previous studies on children''s reading. The new finding is that younger children show poorer coordination than adults, both while reading and while performing a visual search task. Both reading skills and binocular saccades coordination improve with age and children reach a similar level to adults after the age of 10. This finding is most likely related to the fact that learning mechanisms responsible for saccade yoking develop during childhood until adolescence.     

Palaeobiogeographic and metric analysis of the Mesozoic fern Weichselia

Eighty-three publications have been examined to recover information on the palaeogeography, the chronostratigraphy and the presence of the fossil fern genus Weichselia Stiehler in different depositional environments. This fossil fern foliage was reported in 72 localities worldwide. Its fossil record ranges from the Bathonian to the Cenomanian, predominating from the Berriasian to the Barremian, but still common during the Aptian to Cenomanian. Weichselia mostly occurred in continental depositional environments in Europe, whereas it has been mostly related to marginal marine depositional environments in Africa, North America, and India. Three species have been described: W. reticulata, W. peruviana, and W. negevensis. We analyse the measurements on specimens collected from sixteen localities as well as published data from twelve others. Our results suggest that: (i) the climate changes during the Aptian might have affected the pinnule size of Weichselia, as the Aptian-Cenomanian pinnules are larger than those from the Berriasian-Barremian; (ii) some differences might be explained by the metric variation of the frond parts; (iii) there are no clear differences in size between remains collected from different depositional environments; (iv) there is no sufficient evidence to determine how many species of Weichselia have existed.     

Population models for threshold-based control of Tetranychus urticae in small-scale Kenyan tomato fields and for evaluating weather and host plant species effects

The spatial distribution of motile life stages of the two-spotted spider mite Tetranychus urticae Koch in Kenyan small-scale tomato fields was described by Taylor’s power law and an enumerative sampling plan was designed for research purposes. The exponential increase of T. urticae populations during three growing seasons permits the development and use of a simple exponential model for the design of a threshold-based chemical control system. For this purpose, a critical threshold of 440 motile mites per sample unit at the end of the growing season (12 weeks after transplanting) was translated into a proportion of 0.83 infested units in sample 3, i.e. five weeks after transplanting. A sequential binomial sampling plan with respect to the proportion of 0.83, five weeks after transplanting, was designed. The exponential model was extended to account for the influence of weather and host plant species. Model development and parameter estimation were based on three data sets (Kenyan tomato fields, Italian and Californian strawberry fields). The model satisfactorily predicted a positive influence on growth rates by (i) changing the host plant from tomato to strawberry, and (ii) temperature, while a negative effect resulted from (iii) rainfall; both (ii) and (iii) are controlled by temperature–rainfall interactions. In contrast, the estimated parameter values did not satisfactorily describe the expected responses at specific temperature and rainfall values. Nevertheless, the model allowed the rating of host plant species in the field. A fourth data set from Swiss apple orchards was used to test the model, and population build-up on the apple host plant appeared to be higher than on tomatoes but lower than on strawberry.     

Religious Pro-Sociality? Experimental Evidence from a Sample of 766 Spaniards

This study explores the relationship between several personal religion-related variables and social behaviour, using three paradigmatic economic games: the dictator (DG), ultimatum (UG), and trust (TG) games. A large carefully designed sample of the urban adult population in Granada (Spain) is employed (N = 766). From participants'' decisions in these games we obtain measures of altruism, bargaining behaviour and sense of fairness/equality, trust, and positive reciprocity. Three dimensions of religiosity are examined: (i) religious denomination; (ii) intensity of religiosity, measured by active participation at church services; and (iii) conversion out into a different denomination than the one raised in. The major results are: (i) individuals with “no religion” made decisions closer to rational selfish behaviour in the DG and the UG compared to those who affiliate with a “standard” religious denomination; (ii) among Catholics, intensity of religiosity is the key variable that affects social behaviour insofar as religiously-active individuals are generally more pro-social than non-active ones; and (iii) the religion raised in seems to have no effect on pro-sociality, beyond the effect of the current measures of religiosity. Importantly, behaviour in the TG is not predicted by any of the religion-related variables we analyse. While the results partially support the notion of religious pro-sociality, on the other hand, they also highlight the importance of closely examining the multidimensional nature of both religiosity and pro-social behaviour.     

Determination of monosaturated fatty acid double-bond position and geometry for microbial monocultures and complex consortia by capillary GC-MS of their dimethyl disulphide adducts

Monounsaturated fatty acid double-bond position and geometry have been determined for microbial monocultures and complex microbial consortia by capillary GC-MS of their dimethyl disulphide (DMDS) adducts. The technique has permitted (i) chromatographic separation and positive identification of adducts derived fromcis/trans isomers, (ii) characterization of long-chain monounsaturated components (up to 26:1), and (iii) the identification of a wide range of monounsaturated components derived from methanotrophic soil material. The methanotrophic soil sample contained a high relative proportion of the novel phospholipid ester-linked fatty acid 18:1Δ 10c. The DMDS procedure offers a simple and rapid approach that can be routinely applied to microbial fatty acids derived from environmental samples and monocultures.     

A comprehensive insight into the lipid composition of Myxococcus xanthus by UPLC-ESI-MS

Analysis of whole cell lipid extracts of bacteria by means of ultra-performance (UP)LC-MS allows a comprehensive determination of the lipid molecular species present in the respective organism. The data allow conclusions on its metabolic potential as well as the creation of lipid profiles, which visualize the organism’s response to changes in internal and external conditions. Herein, we describe: i) a fast reversed phase UPLC-ESI-MS method suitable for detection and determination of individual lipids from whole cell lipid extracts of all polarities ranging from monoacylglycerophosphoethanolamines to TGs; ii) the first overview of a wide range of lipid molecular species in vegetative Myxococcus xanthus DK1622 cells; iii) changes in their relative composition in selected mutants impaired in the biosynthesis of α-hydroxylated FAs, sphingolipids, and ether lipids; and iv) the first report of ceramide phosphoinositols in M. xanthus, a lipid species previously found only in eukaryotes.     

Genetic divergence analysis of the Common Barn Owl Tyto alba (Scopoli, 1769) and the Short-eared Owl Asio flammeus (Pontoppidan, 1763) from southern Chile using COI sequence

In this paper new mitochondrial COI sequences of Common Barn Owl Tyto alba (Scopoli, 1769) and Short-eared Owl Asio flammeus (Pontoppidan, 1763) from southern Chile are reported and compared with sequences from other parts of the World. The intraspecific genetic divergence (mean p-distance) was 4.6 to 5.5% for the Common Barn Owl in comparison with specimens from northern Europe and Australasia and 3.1% for the Short-eared Owl with respect to samples from north America, northern Europe and northern Asia. Phylogenetic analyses revealed three distinctive groups for the Common Barn Owl: (i) South America (Chile and Argentina) plus Central and North America, (ii) northern Europe and (iii) Australasia, and two distinctive groups for the Short-eared Owl: (i) South America (Chile and Argentina) and (ii) north America plus northern Europe and northern Asia. The level of genetic divergence observed in both species exceeds the upper limit of intraspecific comparisons reported previously for Strigiformes. Therefore, this suggests that further research is needed to assess the taxonomic status, particularly for the Chilean populations that, to date, have been identified as belonging to these species through traditional taxonomy.     

Appendix: A model of plaque formation

Equations describing plaque formation in soft agar have been based on certain simplifying assumptions, for which data are presented. The derived equations permit one to calculate (i) average plaque size as a function of the initial density of indicator cells (D_o), (ii) the number of cells lysed per plaque as a function of D_o, and (iii) the cumulative number of cells lysed at various stages of plaque development. The calculated values agree well with those determined experimentally.