NtRING1, putative RING-finger E3 ligase protein,is a positive regulator of the early stages of elicitin-induced HR in tobacco

Key message

NtRING1 is a RING-finger protein with a putative E3 ligase activity. NtRING1 regulates HR establishment against different pathogens. Loss-/gain-of-function of NtRING1 altered early stages of HR phenotype establishment.

Abstract

Plant defence responses against pathogens often involve the restriction of pathogens by inducing a hypersensitive response (HR). cDNA clones DD11-39, DD38-11 and DD34-26 were previously obtained from a differential screen aimed at characterising tobacco genes with an elicitin-induced HR-specific pattern of expression. Our precedent observations suggested that DD11-39, DD38-11 and DD34-26 might play roles in the HR establishment. Only for DD11-39 a full-length cDNA sequence was obtained and the corresponding protein encoded for a type-HC RING-finger/putative E3 ligase protein which we termed NtRING1. The expression of NtRING1 was upregulated upon HR induction by elicitin, Ralstonia solanacearum, or tobacco mosaic virus (TMV) in tobacco. Silencing of NtRING1 remarkably delayed the establishment of elicitin-induced HR in tobacco as well as the expression of different early induction genes in tissues undergoing HR. Accordingly, transient overexpression of NtRING1 accelerated the HR launching upon elicitin treatment. Taking together, our data suggests that NtRING1 plays a functional role in the early establishment of HR.

     

Small-scale diel vertical migration of zooplankton in the High Arctic

Diel vertical migration (DVM) of zooplankton is considered less prominent at high latitudes where diel changes in irradiance are minimal during periods of midnight sun and polar night, leaving zooplankton without a temporal refuge and thus eliminating a key advantage of DVM. One of the shortcomings of previous DVM studies of zooplankton based on net sampling is that the depth resolution often has been too coarse to detect vertical migrations over short distances. We investigated DVM of zooplankton during August 2010 in drifting sea ice northeast of Svalbard (~81.5°N, ~30.5°E). Classical DVM behaviour (midnight rising, midday sinking) was observed between 20 and 80 m in young copepodite stages (CI–III) of Calanus finmarchicus and Calanus glacialis. The copepods Microcalanus spp., Pseudocalanus spp., Oithona atlantica, Oithona similis and Triconia borealis, alongside Eukrohnia hamata, Limacina helicina, and Fritillaria spp., all displayed signs of DVM. We conclude that zooplankton exhibit DVM in ice-covered waters over rather short distances to optimise food intake in the presence of predators.     

Morphological and molecular evidence on the existence of a single estuarine and rocky intertidal acanthocephalan species of <Emphasis Type="Italic">Profilicollis</Emphasis> Meyer, 1931 (Acanthocephala: Polymorphidae) along the Atlantic and Pacific coasts of southern South America

Profilicollis chasmagnathi Holcman-Spector, Mañé-Garzón & Dei-Cas, 1977 (Acanthocephala: Polymorphidae) has been reported to parasitise different grapsid species as intermediate hosts along the South Atlantic shores, i.e. Cyrtograpsus angulatus (Dana) and Neohelice granulata (Dana) in Uruguay and Cyrtograpsus altimanus (Rathbun) in Argentina. Larvae of a similar acanthocephalan described as Profilicollis antarcticus Zdzitowiecki, 1985 were recorded in the crab Hemigrapsus crenulatus (Milne-Edwards) from an estuarine habitat on the Southeast Pacific shore in Chile. Earlier studies have questioned the specific assignation of the Chilean estuarine populations of Profilicollis Meyer, 1931. The aim of this study was to re-examine the identification of these acanthocephalans by means of morphological and molecular analyses of cystacanths of Profilicollis spp. gathered from C. angulatus, N. granulata, C. altimanus and H. crenulatus. Our analyses showed that a single species of Profilicollis, P. chasmagnathi, parasitises these four crab species. The assessment of specimens from the South Shetlands Islands, the type-locality of P. antarcticus, is needed before formally proposing that P. antarcticus is a junior subjective synonym of P. chasmagnathi.     

<Emphasis Type="Italic">Diaphanosoma mongolianum</Emphasis> Ueno, 1938 (Cladocera: Sididae) in Lakes of Yaroslavl Oblast (Russia)

Findings of the cladoceran Diaphanosoma mongolianum have been recorded in lakes Pleshcheevo (since 2004) and Nero (since 2007) in Yaroslavl oblast at the northern boundary of its range. Similar species D. brachyurum, previously described in both lakes, is found in insignificant numbers. In 2004–2015, the seasonal abundance, spatial distribution, and diel vertical migration of D. mongolianum were studied in deep mesotrophic Lake Pleshcheevo. The species was found in the plankton from early June until October, with the maximum abundance in July–August. The late appearance of males and gamogenetic females (September) is characteristic of its population. D. mongolianum was the most abundant in the epilimnion of the pelagic zone, where it performed diel vertical migrations, concentrating in the surface layer (0–2 m) at night and at a depth of 2–6 m during the day.     

Susceptibility of shore fly <Emphasis Type="Italic">Scatella stagnalis</Emphasis> to five entomopathogenic nematode strains in bioassays

The shore fly, Scatella stagnalis (Fallén) (Diptera: Ephydridae) is an important insect pest of greenhouse crops. We evaluated two different Spanish isolates of entomopathogenic nematodes, Steinernema feltiae (Filipjev) (Rhabditida: Steinernematidae) and Steinernema arenarium (Artyukhovsky) (Rhabditida: Steinernematidae), and two commercially available strains, Steinernema feltiae (Nemaplus^®) and Heterorhabditis bacteriophora (Poinar) (Rhabditida: Heterorhabditidae) (Nematop^®) against shore flies. In tests conducted in 24-well plate filter paper applied at 5, 11, 22, 44 and 88 nematodes per larva, all nematodes produced significant shore fly larval mortality. The lowest concentration tested was enough to obtain high larval mortality (65.2–87.0%). The nematodes Steinernema feltiae and Steinernema arenarium, which parasitized the shore fly larvae faster, also penetrated in higher number in the shore fly larva (4.6–8.8% penetration rate). In bioassays conducted in algae, Steinernema feltiae, applied at 50 nematodes/cm², caused highest (100%) and Steinernema arenarium lowest shore fly mortality (94%). Our results suggest that entomopathogenic nematodes appear feasible for controlling shore flies but further tests are needed to determine their efficacy in the field.     

Genome-wide identification and evolution of <Emphasis Type="Italic">TC1</Emphasis>/<Emphasis Type="Italic">Mariner</Emphasis> in the silkworm (<Emphasis Type="Italic">Bombyx mori</Emphasis>) genome

TC1/Mariner transposons belong to class II transposable elements (TEs) that use DNA-mediated “cut and paste” mechanism to transpose, and they have been identified in almost all organisms. Although silkworm (Bombyx mori) has a large amount of TC1/Mariner elements, the genome wide information of this superfamily in the silkworm is unknown. In this study, we have identified 2670 TC1/Mariner (Bmmar) elements in the silkworm genome. All the TEs were classified into 22 families by means of fgclust, a tool of repetitive sequence classification, seven of which was first reported in this study. Phylogenetic and structure analyses based on the catalytic domain (DDxD/E) of transposase sequences indicated that all members of TC1/Mariner were grouped into five subgroups: Mariner, Tc1, maT, DD40D and DD41D/E. Of these five subgroups, maT rather than Mariner possessed most members of TC1/Mariner (51.23%) in the silkworm genome. In particular, phylogenetic analysis and structure analysis revealed that Bmmar15 (DD40D) formed a new basal subgroup of TC1/Mariner element in insects, which was referred to as bmori. Furthermore, we concluded that DD40D appeared to intermediate between mariner and Tc1. Finally, we estimated the insertion time for each copy of TC1/Mariner in the silkworm and found that most of members were dramatically amplified during a period from 0 to 1 mya. Moreover, the detailed functional data analysis showed that Bmmar1, Bmmar6 and Bmmar9 had EST evidence and intact transposases. These implied that TC1/Mariner might have potential transpositional activity. In conclusion, this study provides some new insights into the landscape, origin and evolution of TC1/Mariner in the insect genomes.     

Increase in density of genetically diverse invasive Asian shore crab (<Emphasis Type="Italic">Hemigrapsus sanguineus</Emphasis>) populations in the Gulf of Maine

Hemigrapsus sanguineus, the Asian shore crab, has rapidly replaced Carcinus maenas, the green crab, as the most abundant crab on rocky shores in the northwest Atlantic since its introduction to the United States (USA) in 1988. The northern edge of this progressing invasion is the Gulf of Maine, where Asian shore crabs are only abundant in the south. We compared H. sanguineus population densities to those from published 2005 surveys and quantified genetic variation using the cytochrome c oxidase subunit I gene. We found that the range of H. sanguineus had extended northward since 2005, that population density had increased substantially (at least 10-fold at all sites), and that Asian shore crabs had become the dominant intertidal crab species in New Hampshire and southern Maine. Despite the significant increase in population density of H. sanguineus, populations only increased by a factor of 14 in Maine compared to 70 in southern New England, possibly due to cooler temperatures in the Gulf of Maine. Genetically, populations were predominantly composed of a single haplotype of Japanese, Korean, or Taiwanese origin, although an additional seven haplotypes were found. Six of these haplotypes were of Asian origin, while two are newly described. Large increases in population sizes of genetically diverse individuals in Maine will likely have a large ecological impact, causing a reduction in populations of mussels, barnacles, snails, and other crabs, similar to what has occurred at southern sites with large populations of this invasive crab species.     

Effects of Colistin and Bacteriocins Combinations on the In Vitro Growth of <Emphasis Type="Italic">Escherichia coli</Emphasis> Strains from Swine Origin

Escherichia coli strains from swine origin, either susceptible or resistant to colistin, were grown under planktonic and biofilm cultures. After which, they were treated with antibacterial agents including nisin and enterocin DD14 bacteriocins, colistin and their combinations. Importantly, the combination of colistin, enterocin DD14 and nisin eradicated the planktonic and biofilm cultures of E. coli CIP54127 and the E. coli strains with colistin-resistance phenotype such as E. coli 184 (mcr-1 ⁺) and E. coli 289 (mcr-1 ^?), suggesting therefore that bacteriocins from lactic acid bacteria could be used as agents with antibiotic augmentation capability.     

Aerial and underwater metabolism of <Emphasis Type="Italic">Patella vulgata</Emphasis> L.: comparison of three intertidal levels

Intertidal molluscs are known to possess specific respiratory organs that permit aerial breathing during emersion. Patella vulgata is a widely distributed intertidal species found from low-water spring tide to high-water neap tidal level. In order to determine metabolic adaptations to habitat, carbon fluxes associated with respiration and calcification of P. vulgata living at high-shore, middle-shore and low-shore levels were compared. Seasonal aerial respiration was measured using an infrared gas analyser; seasonal underwater respiration and calcification were calculated from dissolved inorganic carbon and total alkalinity. P. vulgata showed net CaCO₃ deposition at all seasons, although the high-shore level limpet annual calcification rate was relatively low due to longer air exposure. Both aerial and underwater respiration rates were highly correlated with seasonal temperature variations and followed the vertical shore gradient, with stronger fluxes for low-shore tidal level limpets and lower fluxes for high-shore level limpets that must limit energy expenditure. P. vulgata appears to be well adapted to aerial exposure, with average hourly respiration fluxes stronger in air than in water. This study demonstrates that P. vulgata calcification and respiration are reduced in upper shore levels and are important factors determining the upper distribution limit of the species.     

Responses of Tree Transpiration and Growth to Seasonal Rainfall Redistribution in a Subtropical Evergreen Broad-Leaved Forest

Precipitation changes such as more frequent drought and altered precipitation seasonality may impose substantial impacts on the structure and functioning of forest ecosystems. A better understanding of tree responses to precipitation changes can provide fundamental information for the conservation and management of forests under future climate regimes. We conducted a 2-year seasonal rainfall redistribution experiment to assess the responses of tree transpiration and growth to manipulated precipitation changes in a subtropical evergreen broad-leaved forest. Three precipitation treatments were administered including a drier dry season and wetter wet season treatment (DD), an extended dry season and wetter wet season treatment (ED), and an ambient control treatment, with the total amount of annual rainfall being kept the same among the three treatments. Our results showed that the DD and ED treatments reduced daily transpiration of Schima superba by 8–16 and 13–25%, respectively. The ED treatment also reduced the DBH increment of larger S. superba individuals. In contrast, neither treatment showed obvious effects on the transpiration and DBH increment of another dominant species Michelia macclurei. However, the transpiration of both species showed clear inter-annual differences between the 2 years with contrasting annual rainfall (2094 vs 1582 mm). S. superba had a lower transpiration-to-precipitation ratio (T/P) compared to M. macclurei and showed decreased sensitivities to total solar radiation and vapor pressure deficit under the DD and ED treatments. These results indicate the deep-rooted S. superba may be suppressed with a lower ability to obtain water and assimilate carbon compared to the shallow-rooted M. macclurei under the precipitation seasonality changes, which could potentially cause shifts in species dominance within the forest community.     

Comparative phylogeography of meroplanktonic species, <Emphasis Type="Italic">Aurelia</Emphasis> spp. and <Emphasis Type="Italic">Rhizostoma pulmo</Emphasis> (Cnidaria: Scyphozoa) in European Seas

Mass occurrences of scypozoan medusae have become increasingly common in recent decades in European seas, including species in the genera Aurelia and Rhizostoma. We inferred the phylogeographic patterns of metagenetic scyphozoa Aurelia spp. and Rhizostoma pulmo from mitochondrial COI and nuclear ITS regions. No genetic structure was detected in R. pulmo over the Mediterranean Sea. By contrast, the phylogeographic analyses confirmed the separation of Aurelia spp. to several proposed cryptic species. Our results do not support the null hypothesis that both genera have concordant phylogeographic patterns. The resolvable parsimony network of haplotypes was retrieved for Aurelia aurita, Aurelia sp. 5, and Aurelia sp. 8 without connectivity between them and no genetic structure were found within those groups. Even though evidence of hybridization was found between A. aurita and Aurelia sp. 5, that did not break down the phylogenetic separation among them. The lowest haplotype and nucleotide diversity were found in samples of Aurelia sp. 8 and R. pulmo from the northern Adriatic, which acts as a sink area due to strong genetic drift. These new findings will facilitate linking the phenotype of the organism and its ability to survive in a particular environment—which shapes phylogeographic patterns.     

Differential expression of two <Emphasis Type="Italic">CONSTANS-LIKE1</Emphasis> genes in potato

Although the CONSTANS gene and its CONSTANS-LIKE1 (COL1) orthologs are known to control the photoperiod-dependent floral transition in many plant species, the role of these genes in Solanum development has not been sufficiently elucidated. Previously we characterized two forms of CONSTANS-LIKE1 genes, sCOL1 and lCOL1, in potato (Solanum tuberosum ssp. tuberosum). To prove that these genes were functional, we followed their expression in potato cv. Early Rose with the real-time PCR technique. Both sCOL1 and lCOL1 displayed characteristic day-night patterns of expression under long-day and short-day conditions. The profiles and amplitudes of expression dramatically differed in two genes, with the maximum sCOL1 expression exceeding that of lCOL1 by an order of magnitude.     

Grazing effects of the periwinkle <Emphasis Type="Italic">Echinolittorina</Emphasis><Emphasis Type="Italic">peruviana</Emphasis> at a central Peruvian high rocky intertidal

Echinolittorina peruviana is the most common gastropod in the high intertidal zone of Peru, representing more than 80% of the individuals present at that zone. Experimental removal of snails was used to evaluate their effects on (a) abundance of epilithic biofilm, (b) barnacle recruitment, and (c) abundance of macroalgae under “normal” conditions of the El Niño Southern Oscillation (ENSO). Experiments were carried out from October 2005 to April 2007 at two intertidal levels of a semi-protected rocky shore of central Peru. Results demonstrated that E. peruviana is able to control biofilm abundance and barnacle recruitment at both heights investigated, with marked effects in the lower zone. Erect macroalgae (Ulva spp. and Gelidium spp.) were less affected by grazing; but negative effects were observed on macroalgal crusts. Season and physical stress seem to play a more important role in the abundance of macroalgae in the high intertidal. Our results are similar to those reported elsewhere for high shore littorinids and represent baseline data to understand how the role of intertidal consumers will vary under the cold (La Niña) and warm (El Niño) phases of ENSO on these shores.     

Occurrence of two types of larvae of the Asian seaperch (<Emphasis Type="Italic">Lateolabrax</Emphasis>) in the estuaries of northern Vietnam

Lateolabrax sp. larvae were collected in the Tien Yen and Kalong estuaries of northern Vietnam, the southernmost locality for this genus distribution. Vietnamese Lateolabrax sp. larvae could be distinguished from those of L. japonicus by pigmentation patterns. Their morphological, meristic and pigmentation characters were closer to those of Chinese Lateolabrax than L. japonicus, so Vietnamese Lateolabrax is likely situated as a population of the Chinese one. Morphometric and pigmentation characters of larvae from the two estuaries differed, suggesting that Lateolabrax of northern Vietnam are diversified and consist of at least two different breeding stocks.     

First volumetric record of fungal spores in the atmosphere of Montevideo City,Uruguay: a 2-year survey

In Uruguay, aeromycological studies are restricted to a gravimetric analysis performed from December 1942 to March 1944 in Montevideo where spores of Pucciniaceae, Alternaria and Helminthosporium were the only specimens identified. Daily monitoring of airborne fungal spores was carried out for the first time in Montevideo, from April 2012 to March 2014, using a Rotorod sampler in order to evaluate the seasonal variation and influence of meteorological parameters. A total of 548,309.68 spores/m³ were recorded which belong to anamorphs of Higher Fungi (69.18 %), Phyla Ascomycota (12.62 %), Basidiomycota (8.01 %), Oomycota (0.37 %) and Myxomycota (0.06 %). Airborne spores occurred in Montevideo throughout the whole year. However, a seasonal pattern was revealed, with the highest concentrations recorded in autumn and summer. The most abundant spore types were Cladosporium (53.22 %), Alternaria (6.62 %), Didymella Group (5.86 %), Leptosphaeria Group (4.37 %) and Coprinus (4.3 %). Temperature appeared to be the most influential meteorological factor correlating significantly and positively with total spore, Cladosporium, Alternaria and Didymella Group abundance. Relative humidity influenced positively total spore, Cladosporium and Didymella Group concentrations while a weak negative association was obtained for Alternaria. Wind speed correlated negatively with total spore, Cladosporium, Alternaria and Didymella Group. Precipitation showed a negative influence on Alternaria, while positive correlations were observed for Didymella Group. For the first time, fungal spores considered allergenic were recorded in Montevideo atmosphere and the risk of exposure would have been high from December to June. However, long-term sampling is needed to define seasonal prevalence patterns and the influence of meteorological conditions on spore abundance.     

Disentangling the stream community impacts of <Emphasis Type="Italic">Didymosphenia geminata</Emphasis>: How are higher trophic levels affected?

Human activities frequently result in either intentional or unintentional introductions of species to new locations, and freshwater environments worldwide are particularly vulnerable to species invasions. An introduced freshwater diatom, Didymosphenia geminata, was first discovered in New Zealand in 2004 but there was limited research available to predict the drivers of D. geminata biomass and how biomass variability might influence higher trophic levels (e.g. invertebrates and fish). We examined the effect of D. geminata biomass on benthic invertebrates, invertebrate drift and fish communities in 20 rivers in New Zealand with variable hydrology, physical habitat and water chemistry. Variation in D. geminata biomass was best explained by a model that showed D. geminata biomass increased with time since the last flow event exceeding three times the median annual discharge and decreasing concentration of dissolved reactive phosphorus. Analyses of biotic responses showed that high D. geminata biomass did not affect either invertebrate or fish diversity but altered the structure of benthic communities, changed the composition of drifting invertebrate communities and reduced fish biomass by 90 %, particularly trout. A partial least squares path model was used to disentangle both direct and indirect effects of D. geminata on fish communities and showed D. geminata had a significant negative direct effect on fish communities. This is the first study to show how the potential effects of the introduced diatom D. geminata can impact fish communities and has shown that D. geminata impacts fish both directly and indirectly through changes in their invertebrate prey community.     

Multi-substrate biodegradation interaction of 1, 4-dioxane and BTEX mixtures by <Emphasis Type="Italic">Acinetobacter baumannii</Emphasis> DD1

This study evaluated substrate interactions during the aerobic biodegradation of 1, 4-dioxane and BTEX mixtures by a pure culture, Acinetobacter baumannii DD1, which is capable of utilizing 1, 4-dioxane for growth. A. baumannii DD1 could utilize BTEX as a sole carbon source, but could not utilize m-xylene and p-xylene. In binary mixtures, there was a lag of about 14 h before the degradation of BTE, and 1, 4-dioxane only started to be utilized when BTE was completely degraded by 1, 4-dioxane-grown DD1. Furthermore, the biodegradation rate of 1, 4-dioxane decreased from 73.33 to 40.74 mg/(h g dry weight) after the biodegradation of benzene. 1, 4-dioxane could not be degraded after the biodegradation of o-xylene in 80 h. DD1 could also not degrade m-xylene and p-xylene coexisting with 1, 4-dioxane. The ability of DD1 to degrade BTEX occurred in the following order: benzene > ethylbenzene > toluene > o-xylene > m-xylene = p-xylene. The biodegradation of 1, 4-dioxane was not activated in the mixture with o-xylene, primarily because of the accumulation of the specific toxic intermediate, 2, 3-dimethylphenol. The lag in BTE degradation was presumably because of the induction of enzymes necessary for BTE degradation. Additionally, SDS-PAGE analysis demonstrated that there were different proteins during the degradation of benzene and 1, 4-dioxane.     

Immature stages of <Emphasis Type="Italic">Molipteryx fuliginosa</Emphasis> (Uhler) (Heteroptera,Coreidae) in the South of the Russian Far East

The morphology of the egg and the I-V-instar nymphs of Molipteryx fuliginosa (Uhler) was studied based on the observations made under near-natural conditions in Primorskii Territory since the emergence of over-wintered adults till the appearance of adults of the new generation, including egg production, maturation and molt at each nymphal instar. The egg and the nymphal instars are described and the distinguishing characters of Molipteryx fuliginosa and Coreus marginatus (Linnaeus) are given.     

Spontaneous steppe restoration on abandoned cropland in Kazakhstan: grazing affects successional pathways

After the collapse of the Soviet Union in 1991, 12 million ha of cropland were abandoned in the steppe zone of Kazakhstan. At the same time livestock numbers crashed, leaving large areas of steppe without any grazing. We aimed to investigate, to which degree spontaneous succession on former cropland leads to the restoration of native steppe vegetation, and how this process is influenced by changing grazing patterns. We recorded biomass and vegetation characteristics as well as local soil and landscape variables in 151 quadrats of 100 m², covering 89 plots on former cropland abandoned in the early 1990s and 62 reference plots of near-natural steppe grassland that was never ploughed. About half of the plots of each category were located in a remote region where grazing has been absent for ca. 20 years, whereas the other half was located in a region with moderate livestock grazing. While there were no differences in the diversity, structure and plant life form composition of currently grazed and un-grazed near-natural steppe grasslands, corresponding successional plots on abandoned arable land exhibited significant differences. Grazed plots on former fields showed higher species richness and a higher cover of dwarf shrubs (mostly Artemisia spec.), ruderals and perennial herbs. At the same time, immigration of typical steppe species was much more successful. Contrary, in the absence of any grazing we found species-poor swards dominated by Stipa lessingiana and Leymus ramosus exhibiting an increasing frequency of wildfires due to litter accumulation. After 15–20 years, secondary steppe grasslands still differed substantially from their near-natural references. Our results suggest that grazing is mandatory to fully restore the original near-natural steppe vegetation and the underlying processes of pyric herbivory.