The importance of genetic verification for determination of Atlantic salmon in north Pacific waters

Genetic analyses of two unknown but putative Atlantic salmon Salmo salar captured in the Copper River drainage, Alaska, demonstrated the need for validation of morphologically unusual fishes. Mitochondrial DNA sequences (control region and cytochrome b) and data from two nuclear genes [first internal transcribed spacer (ITS-1) sequence and growth hormone (GH1) amplification product] indicated that the fish caught in fresh water on the Martin River was a coho salmon Oncorhynchus kisutch , while the other fish caught in the intertidal zone of the Copper River delta near Grass Island was an Atlantic salmon. Determination of unusual or cryptic fish based on limited physical characteristics and expected seasonal spawning run timing will add to the controversy over farmed Atlantic salmon and their potential effects on native Pacific species. It is clear that determination of all putative collections of Atlantic salmon found in Pacific waters requires validation. Due to uncertainty of fish identification in the field using plastic morphometric characters, it is recommended that genetic analyses be part of the validation process.     

Reproductive biology of Vinciguerria nimbaria in the equatorial waters of the eastern Atlantic Ocean

Adult Vinciguerria nimbaria in an area of the Atlantic Ocean (0–5°N; 10–20°W), collected from November 1994 to February 1998, exhibited two different patterns in diel behaviour: 'typical' behaviour which consisted of large diel vertical migration and 'atypical', characterized by concentrations of schools that remained in the surface layers during the daytime. The total life span of V. nimbaria was estimated at 6–7 months. Females were mature when they reached 30·6 mm standard length ( L _S), which corresponded to an age of 85 days. Once the females were mature, spawning was continuous in the population as a whole, and V. nimbaria spawned continuously throughout the year. Spawning took place during two restricted times of the day: typical females spawned at dusk and atypical females spawned at dawn. Using the post-ovulatory follicles method, spawning frequency was estimated at 2 days. Batch fecundity was estimated at 1236 oocytes or 1230 oocytes g⁻¹ of total body mass, and egg size was 650 µm whatever the period of the year. The lifetime fecundity of V. nimbaria was estimated at 9000 eggs (109 000 eggs if mortality rate was not taken into account), and the maximum stock egg production of a theoretical cohort occurred at 37 mm L _S. Young adults thus contributed the most to the reproductive output for the survival of the population.     

Distribution of Anisakis species larvae from fishes of the Japanese waters

Human anisakiasis is caused by the consumption of raw, marinated or undercooked fish and squid infected with nematodes of the genus Anisakis Dujardin, 1845. In view of food safety, this study was carried out to examine the distribution of Anisakis species in marine fishes within Japanese waters. Seven fish species from six localities were collected and examined for Anisakis infection. Morphological and molecular (ITS region and mtDNA cox2 gene) characterization revealed the presence of two, among the three sibling species of Anisakis simplex, viz. A. simplex sensu stricto (s.s.) and A. pegreffii. Distribution data were collated with the results from the previous researches to better understand Anisakis distribution in Japanese waters. Distributions of Anisakis species were found to be locality-specific rather than host-specific, particularly between the two major species, A. simplex s.s. and A. pegreffii. Anisakis simplex s.s. is mainly found in fishes from northern Japan to Pacific sides, whereas A. pegreffii is in fishes from the Sea of Japan to East China Sea sides.     

Distribution and routes of drift migrations in larvae of three species of flatfish Bothus (Bothidae) in open waters of the northern Atlantic

On the basis of large collections, comprehensive data on the distribution of larvae of three species of flatfishes of the genus Bothus (B. ocellatus, B. robinsi, and B. podas) in the northern Atlantic are provided, and the routes of their drift migrations are discussed. Special attention is focused on discussing problems of identification of larvae of the listed species and the specification of evidence on meristic characters of adult flatfishes of these species used for the diagnostics of their larvae. It is shown that larvae of two American species of Bothus carried out from the shelves to the system of western boundary currents are widely distributed in the northern Atlantic drifting in waters of the Northern Subtropical Gyre (NSG). Some of them reach the Azores, and some are drifted along the periphery of the circulation system of the NSG currents towards North America. Unlike larvae of American species, larvae of the eastern Atlantic B. podas perform no transatlantic drift migrations, and the area of their distribution is confined to the waters of the eastern Atlantic. Such differences in the extent of latitudinal passive migrations between B. podas and western Atlantic species are explained according to Torson (1965) by differences in temperature conditions during the drift of larvae of species under comparison that directly affect the decrease (during water temperature increase) or increase (at temperature decrease) of the pelagic phase in their development. The latitudinal drift of larval B. podas from West Africa westwards proceeds due to currents that gradually warm during their motion, which causes a decrease of the dates of their staying in the pelagial. The transatlantic drift of larval American Bothus spp. from North America eastwards is observed in gradually cooling currents, which leads to an increase in the duration and extent of their passive migrations.     

Genetic identification of Anisakis larvae in European hake from Atlantic and Mediterranean waters for stock recognition

The occurrence of seven species of the larval parasitic nematode Anisakis , which can be used as a biological tag for hake Merluccius merluccius stocks throughout their geographical range, is reported. Hake were collected from 14 localities in the Mediterranean Sea and the Atlantic Ocean. Anisakis larvae ( n  = 1950), which were recovered, were identified to species by means of genetic markers (allozymes). Within Anisakis type I, the larvae of A. pegreffii , A. simplex s.s ., A. typica and A. ziphidarum were detected, while within Anisakis type II, A. physeteris , A. brevispiculata and Anisakis sp. were identified. There were significant differences in the relative proportions of the various Anisakis species identified in hake samples from the Mediterranean Sea and Atlantic Ocean, suggesting the existence of different stocks of M. merluccius in European waters.     

Distribution of thermophilic marine sulfate reducers in north sea oil field waters and oil reservoirs

The distribution of thermophilic marine sulfate reducers in produced oil reservoir waters from the Gullfaks oil field in the Norwegian sector of the North Sea was investigated by using enrichment cultures and genus-specific fluorescent antibodies produced against the genera Archaeoglobus, Desulfotomaculum, and Thermodesulforhabdus. The thermophilic marine sulfate reducers in this environment could mainly be classified as species belonging to the genera Archaeoglobus and Thermodesulforhabdus. In addition, some unidentified sulfate reducers were present. Culturable thermophilic Desulfotomaculum strains were not detected. Specific strains of thermophilic sulfate reducers inhabited different parts of the oil reservoir. No correlation between the duration of seawater injection and the numbers of thermophilic sulfate reducers in the produced waters was observed. Neither was there any correlation between the concentration of hydrogen sulfide and the numbers of thermophilic sulfate reducers. The results indicate that thermophilic and hyperthermophilic sulfate reducers are indigenous to North Sea oil field reservoirs and that they belong to a deep subterranean biosphere.     

Marine bioactivity in Irish waters

In 2009, the Marine Biodiscovery Laboratory was set-up at the Marine Institute with funds from the Marine Institute and the Beaufort Marine Biodiscovery Research Programme. The Marine Biodiscovery Laboratory has already processed over 130 marine specimens from coastal zones and from the Deep Sea (≤3,000 m) within the Marine Irish Exclusive Economic Zone. Beaufort Biodiscovery funded taxonomists are involved in species identification and elucidation of evolutionary relationships. The project approach links sampling, systematics, extraction, microbial metagenomics and biomaterials. The Laboratory consists of approximately 56 m² including an extraction and a bioassay suite. The Laboratory samples and assesses marine biological diversity geared towards developing natural products for drug discovery, advanced material applications and bio-medical devices. Samples are tracked from sample log-into right through to extraction and bioassay using a customised Marine Biodiscovery Database. The extraction procedure is described along with the anti-bacterial bioassay selected for routine use. The Marine Biodiscovery Database manages the data generated and links the data collected by the project’s stakeholders to existing biodiversity, genetic and chemical resources. The system uses in-house developed software tools to merge biodiscovery data collected with other MI resources and external databases and for the data mining and visualisation of biogeographical, genetic and chemical information aimed at the identification of potential biodiversity and bioactivity “hotspots”.     

Deep-water life cycle of Anisakis paggiae (Nematoda: Anisakidae) in the Irminger Sea indicates kogiid whale distribution in north Atlantic waters

The study of the beryciform Anoplogaster cornuta from the Irminger Sea (north Atlantic) revealed the presence of the anisakid nematode Anisakis paggiae inside the body cavity, representing a new host and locality record. This deep-sea fish was infected with Anisakis larvae at a prevalence of 57.1% and a mean intensity of 2.2, with no correlation between the fish standard length and the number of accumulated A. paggiae. Kogiid whales (Kogia breviceps, K. sima), the typical final hosts of this parasitic nematode, have not yet been recorded so far in the north. Because A. cornuta does not migrate outside the Irminger Sea, and by using the parasite as an indicator for the presence of the final hosts, A. paggiae must have been introduced through migratory kogiid final hosts. This would extend their range of distribution into the Irminger Sea. The depth range of the meso- and bathypelagic A. cornuta and the frequent occurrence of Anisakis inside this deep-sea fish demonstrate an oceanic deep-water life cycle for A. paggiae in the north Atlantic.     

Distribution analysis of hydrogenases in surface waters of marine and freshwater environments

Background

Surface waters of aquatic environments have been shown to both evolve and consume hydrogen and the ocean is estimated to be the principal natural source. In some marine habitats, H₂ evolution and uptake are clearly due to biological activity, while contributions of abiotic sources must be considered in others. Until now the only known biological process involved in H₂ metabolism in marine environments is nitrogen fixation.

Principal Findings

We analyzed marine and freshwater environments for the presence and distribution of genes of all known hydrogenases, the enzymes involved in biological hydrogen turnover. The total genomes and the available marine metagenome datasets were searched for hydrogenase sequences. Furthermore, we isolated DNA from samples from the North Atlantic, Mediterranean Sea, North Sea, Baltic Sea, and two fresh water lakes and amplified and sequenced part of the gene encoding the bidirectional NAD(P)-linked hydrogenase. In 21% of all marine heterotrophic bacterial genomes from surface waters, one or several hydrogenase genes were found, with the membrane-bound H₂ uptake hydrogenase being the most widespread. A clear bias of hydrogenases to environments with terrestrial influence was found. This is exemplified by the cyanobacterial bidirectional NAD(P)-linked hydrogenase that was found in freshwater and coastal areas but not in the open ocean.

Significance

This study shows that hydrogenases are surprisingly abundant in marine environments. Due to its ecological distribution the primary function of the bidirectional NAD(P)-linked hydrogenase seems to be fermentative hydrogen evolution. Moreover, our data suggests that marine surface waters could be an interesting source of oxygen-resistant uptake hydrogenases. The respective genes occur in coastal as well as open ocean habitats and we presume that they are used as additional energy scavenging devices in otherwise nutrient limited environments. The membrane-bound H₂-evolving hydrogenases might be useful as marker for bacteria living inside of marine snow particles.     

Descriptions of unionicolid larvae from three North American unionid bivalves

Four larval types of unionicolid mite from a lake in New York State are described and figured. Three were found in Lampsilis siliquoidea (Barnes), one of these also being found in Elliptio complanata (Solander). Anodonta grandis (Say) contained the fourth type.     

长江口北支水域浮游动物的研究

依据2003年7月(丰水期)和2004年1月(枯水期)对长江口北支水域环境调查资料,研究了长江口北支水域浮游动物分布变化成国.结果表明,丰水期浮游动物生物量较高,平均为234.38 mg·m^-3,涨、落潮时分别为141.3和327.40mg·m^-3;枯水期为188.81 mg·m^-3,涨、落潮时变化不大,分别为184.69和192.93 mg·m^-3;涨潮时长江口北支西侧水域生物量高于东侧,落潮时则相反;潮汐对种类数的影响不明显;多样性指数(H')值涨潮大于落潮.丰水期涨潮时北岸生物量高于南岸,落潮时相反,而枯水期两岸差别不如丰水期明显.长江口北支浮游动物分布的变化与长江口门外浮游动物数量季节变动和潮流携带有关,与长江径流关系不明显.柯氏力通过潮夕作用,是长江口北支南北两岸生物量差异形成的重要原因.     

Microbial methanol uptake in northeast Atlantic waters

Methanol is the predominant oxygenated volatile organic compound in the troposphere, where it can significantly influence the oxidising capacity of the atmosphere. However, we do not understand which processes control oceanic concentrations, and hence, whether the oceans are a source or a sink to the atmosphere. We report the first methanol loss rates in seawater by demonstrating that ¹⁴C-labelled methanol can be used to determine microbial uptake into particulate biomass, and oxidation to ¹⁴CO₂. We have found that methanol is used predominantly as a microbial energy source, but also demonstrated its use as a carbon source. We report biological methanol oxidation rates between 2.1 and 8.4 nmol l⁻¹ day⁻¹ in surface seawater of the northeast Atlantic. Kinetic experiments predict a V_max of up to 29 nmol l⁻¹ day⁻¹, with a high affinity K_m constant of 9.3 n in more productive coastal waters. We report surface concentrations of methanol in the western English channel of 97±8 n (n=4) between May and June 2010, and for the wider temperate North Atlantic waters of 70±13 n (n=6). The biological turnover time of methanol has been estimated between 7 and 33 days, although kinetic experiments suggest a 7-day turnover in more productive shelf waters. Methanol uptake rates into microbial particles significantly correlated with bacterial and phytoplankton parameters, suggesting that it could be used as a carbon source by some bacteria and possibly some mixotrophic eukaryotes. Our results provide the first methanol loss rates from seawater, which will improve the understanding of the global methanol budget.     

Distribution and ecology of tintinnids in the plankton of Lebanese coastal waters (eastern Mediterranean)

The tintinnids of Jounieh Bay in Lebanon were identified andtheir numerical abundance determined in horizontal and verticalnet samples from February 1979 to December 1980. Large fluctuationsin abundance and composition of the tintinnid fauna occurredduring the period of investigation. Two distinct peaks werenoted, a major one in May–June and a minor one in November–December.The first followed the main phytoplankton peak, suggesting apositive nutritional relationship between the two populations.The most abundant species were Tintinopsis beroidea and Eutintinnuslusus-undae. A few other species showed great abundance duringshorter periods. In all, 121 species were recorded during thisperiod, and of these 12 belong to the genus Tintinnopsis and11 to Eutintinnus.     

Distribution and abundance of European hake Merluccius merluccius (L.), eggs and larvae in the North East Atlantic waters in 1995 and 1998 in relation to hydrographic conditions

Plankton samples from surveys in 1995 and 1998 were analysedin order to study the spatial distribution of hake (Merlucciusmerluccius) eggs and larvae. The cruises covered an extensivearea from the south of the Bay of Biscay to the north-west ofIreland. This spatial distribution has been interpreted in relationto the direction and intensity of the dominant winds. An importantdecrease of eggs (69%) and larvae (27%) was observed from 1995to 1998. Hake showed continuous spawning from February to Julyin the area. The centroids of hake egg distribution indicateda northward displacement of the peak of spawning as the seasonprogresses. Spawning of hake was located close to the 200 mdepth isobath in the southern area (Bay of Biscay) and it spreadover the shelf in the area of the Celtic Sea. Eggs were mostabundant at 20 m depth temperatures between 12 and 12.5°C.The centroids of hake larvae distribution also showed a northwarddisplacement although not as strong as that of hake eggs. Thespatial distribution of hake larvae by size ranges showed importantdifferences between years: in 1995 it suggested inshore transportof larvae, from the spawning areas (close to the 200 m depthisobath) to nursery areas (closer to the coast) while in 1998it suggested offshore transport. This transport does not correspondwith the general wind regimes during those years. Thereforeit is concluded that the transport of the hake larvae to nurseryareas must be controlled by different hydrographic mechanismssuch as geostrophic currents in the Bay of Biscay and tidalcurrents in the northern areas.     

Effects of elevated temperature and carbon dioxide on the growth and survival of larvae and juveniles of three species of northwest Atlantic bivalves

Rising CO(2) concentrations and water temperatures this century are likely to have transformative effects on many coastal marine organisms. Here, we compared the responses of two life history stages (larval, juvenile) of three species of calcifying bivalves (Mercenaria mercenaria, Crassostrea virginica, and Argopecten irradians) to temperatures (24 and 28°C) and CO(2) concentrations (～250, 390, and 750 ppm) representative of past, present, and future summer conditions in temperate estuaries. Results demonstrated that increases in temperature and CO(2) each significantly depressed survival, development, growth, and lipid synthesis of M. mercenaria and A. irradians larvae and that the effects were additive. Juvenile M. mercenaria and A. irradians were negatively impacted by higher temperatures while C. virginica juveniles were not. C. virginica and A. irradians juveniles were negatively affected by higher CO(2) concentrations, while M. mercenaria was not. Larvae were substantially more vulnerable to elevated CO(2) than juvenile stages. These findings suggest that current and future increases in temperature and CO(2) are likely to have negative consequences for coastal bivalve populations.     

Invasive bivalves in fresh waters: impacts from individuals to ecosystems and possible control strategies

Invasive bivalves may cause great ecological, evolutionary, and economic impacts in freshwater ecosystems. Species such as Corbicula fluminea, Dreissena bugensis, Dreissena polymorpha, Limnoperna fortunei, and Sinanodonta woodiana are widely distributed hyper-successful invaders, but several others not yet invasive (or at least not considered as such) may become so in the near future. These species can affect hydrology, biogeochemical cycling, and biotic interactions through several mechanisms, with impacts ranging from individuals to ecosystems. Freshwater invasive bivalves can create no-analog ecosystems, posing serious difficulties for management, but new techniques are becoming available which may enhance options to detect early introductions and mitigate impacts. Although knowledge about the biology of these bivalves has increased considerably in the last two decades, several fundamental gaps still persist; we suggest new research directions that are worth exploring in the near future.     

Light enhanced amino acid uptake by dominant bacterioplankton groups in surface waters of the Atlantic Ocean

(35)S-Methionine and (3)H-leucine bioassay tracer experiments were conducted on two meridional transatlantic cruises to assess whether dominant planktonic microorganisms use visible sunlight to enhance uptake of these organic molecules at ambient concentrations. The two numerically dominant groups of oceanic bacterioplankton were Prochlorococcus cyanobacteria and bacteria with low nucleic acid (LNA) content, comprising 60% SAR11-related cells. The results of flow cytometric sorting of labelled bacterioplankton cells showed that when incubated in the light, Prochlorococcus and LNA bacteria increased their uptake of amino acids on average by 50% and 23%, respectively, compared with those incubated in the dark. Amino acid uptake of Synechococcus cyanobacteria was also enhanced by visible light, but bacteria with high nucleic acid content showed no light stimulation. Additionally, differential uptake of the two amino acids by the Prochlorococcus and LNA cells was observed. The populations of these two types of cells on average completely accounted for the determined 22% light enhancement of amino acid uptake by the total bacterioplankton community, suggesting a plausible way of harnessing light energy for selectively transporting scarce nutrients that could explain the numerical dominance of these groups in situ.