Global diversity of shrimps (Crustacea: Decapoda: Caridea) in freshwater

Freshwater caridean shrimps account for approximately a quarter of all described Caridea, numerically dominated by the Atyidae and Palaemonidae. With the exception of Antarctica, freshwater shrimp are present in all biogeographical regions. However, the Oriental region harbours the majority of species, whilst the Nearctic and western Palaearctic are very species-poor. Many species are important components of subsistence fisheries, whilst the Giant River Prawn forms the basis of an extensive aquaculture industry. A total of 13 species are threatened or endangered, with one species formally extinct. Guest editors: E. V. Balian, C. Lévêque, H. Segers and K. Martens Freshwater Animal Diversity Assessment     

Global diversity of crabs (Aeglidae: Anomura: Decapoda) in freshwater

The freshwater anomuran crabs of the family Aeglidae are all restricted to southern South America occurring in Chile, Brazil, Bolivia, Uruguay, Paraguay, and Argentina. The family consists of a single genus, Aegla, containing 63 currently described species. There are another 5–10 known yet undescribed species to complement this diversity. The aeglids occur in freshwater lakes, streams, rivers, and in caves with freshwater. The origin of the family appears to be from marine ancestors from the Pacific invading streams in Chile about 75 mya radiating both in Chile and again on the eastern side of the Andes, particularly in Brazil. Of the 63 species, 23 or 36.5% are considered under threat and are in need of conservation action. Guest editors: E. V. Balian, C. Lévêque, H. Segers & K. Martens Freshwater Animal Diversity Assessment     

Geometric morphometric analysis of the freshwater prawn Macrobrachium borellii (Decapoda: Palaemonidae) at a microgeographical scale in a floodplain system

Morphometric studies are useful for delineating the shapes of various populations and species over geographical ranges and as evidence of regional differences in crustaceans. Hydrological fluctuations in a floodplain system modulate the dispersal and presence of decapods among habitats and constitute an important macrofactor that regulate other environmental variables and which could explain the richness, distribution and abundance of organisms that live in these systems. Morphological variations among populations of the freshwater prawn Macrobrachium borellii in a floodplain system at a microgeographical scale were studied using geometric morphometrics. Carapace structure was represented using 16 digitised landmarks. Allometry and sexual dimorphism was tested. Variation in shape was explored via Principal Component Analysis. Canonical Variate Analyses was applied to compare the differences in shape between species’ populations. The correlations and covariations among shapes and hydrometric level, current velocity, geographical location and hydrologic distances were analysed. The average carapace shape was different between sexes in all sites. Populations that were near each other in terms of hydrological distance had similar shapes, but all of the populations differed in shape from the farthest population. The environmental variables were not good predictors of the carapace shape. Instead, the shape was strongly related to the hydrologic distance and geographical location. The swimming characteristics of these prawns and their passive movements, together with the dynamics of a floodplain system, explain the low morphological variation between populations in this study. The dynamic characteristics of the system influence the dispersal of the prawns and allow populations to remain connected.     

The freshwater palaemonid prawns (Crustacea: Decapoda: Caridea) of Myanmar

The taxonomy of the palaemonid freshwater prawns of Myanmar is reviewed and 19 species are recorded. These belong to three genera, with 17 species of Macrobrachium, one species of Palaemonetes and one species of Leptocarpus. The identities of Palaemon spinipes birmanicus Schenkel, 1902, and Palaemon naso Kemp, 1918, are clarified with both recognised as distinct taxa. The taxonomy of several poorly known species of Macrobrachium,viz. M. villosimanus (Tiwari, 1949), M. peguense (Tiwari, 1952), M. hendersoni (De Man, 1906) and M. platyrostrum (Tiwari, 1952) is revised and discussed. Five species are reported from Myanmar for the first time, viz. Macrobrachium lamarrei (H. Milne-Edwards, 1837), M. dayanum (Henderson, 1893), M. lanchesteri (De Man, 1911), M. nipponense (De Haan, 1894), and Palaemonetes sinensis (Sollaud, 1911). One new species, Macrobrachium lanatum, which is closely allied to M. scabriculum (Heller, 1862) and M. dolichodactylus (Hilgendorf, 1879), is described and figured.     

Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus

Background

Elucidating the process of speciation requires an in-depth understanding of the evolutionary history of the species in question. Studies that rely upon a limited number of genetic loci do not always reveal actual evolutionary history, and often confuse inferences related to phylogeny and speciation. Whole-genome data, however, can overcome this issue by providing a nearly unbiased window into the patterns and processes of speciation. In order to reveal the complexity of the speciation process, we sequenced and analyzed the genomes of 10 wild pigs, representing morphologically or geographically well-defined species and subspecies of the genus Sus from insular and mainland Southeast Asia, and one African common warthog.

Results

Our data highlight the importance of past cyclical climatic fluctuations in facilitating the dispersal and isolation of populations, thus leading to the diversification of suids in one of the most species-rich regions of the world. Moreover, admixture analyses revealed extensive, intra- and inter-specific gene-flow that explains previous conflicting results obtained from a limited number of loci. We show that these multiple episodes of gene-flow resulted from both natural and human-mediated dispersal.

Conclusions

Our results demonstrate the importance of past climatic fluctuations and human mediated translocations in driving and complicating the process of speciation in island Southeast Asia. This case study demonstrates that genomics is a powerful tool to decipher the evolutionary history of a genus, and reveals the complexity of the process of speciation.     

Amplification of multiple copies of mitochondrial Cytochrome b gene fragments in the Australian freshwater crayfish,Cherax destructor Clark (Parastacidae: Decapoda)

Non-coding copies of fragments of the mitochondrial genome translocated to the nucleus or pseudogenes are being found with increasing frequency in a diversity of organisms. As part of a study to evaluate the utility of a range of mitochondrial gene regions for population genetic and systematic studies of the Australian freshwater crayfish, Cherax destructor (the yabby), we report the first detection of Cytochrome b (Cyt b) pseudogenes in crustaceans. We amplified and sequenced fragments of the mitochondrial Cyt b gene from 14 individuals of C. destructor using polymerase chain reaction (PCR) with primers designed from conserved regions of Penaeus monodon and Drosophila melanogaster mitochondrial genomes. The phylogenetic tree produced from the amplified fragments using these primers showed a very different topology to the trees obtained from sequences from three other mitochondrial genes, suggesting one or more nuclear pseudogenes have been amplified. Supporting this conclusion, two highly divergent sequences were isolated from each of two single individuals, and a 2 base pair (bp) deletion in one sequence was observed. There was no evidence to support inadvertent amplification of parasite DNA or contamination of samples from other sources. These results add to other recent observations of pseudogenes suggesting the frequent transfer of mitochondrial DNA (mtDNA) genes to the nucleus and reinforces the necessity of great care in interpreting PCR-generated Cyt b sequences used in population or evolutionary studies in freshwater crayfish and crustaceans more generally.     

Growth and reproduction in the freshwater crab, Potamon fluviatile (Decapoda, Brachyura)

SUMMARY. 1. The patterns of relative and absolute growth and the reproductive biology of the freshwater crab Potamon fluviatile were studied in a natural population inhabiting a hill stream close to Florence, Italy, over an annual cycle. Periodical inspections of a stretch of the stream were made and morphological and anatomical analysis carried out.
2. As in other decapods, the females are smaller than the males (they can however occasionally reach larger dimensions). This may be determined by a lengthening of the moulting interval in the females, by their higher energetic cost of reproduction (since reproduction occurs simultaneously with moulting, at least in this habitat) and/or by a higher mortality rate resulting from the risks associated with carrying eggs and vagility.
3. The analysis of relative growth in secondary sexual characters (abdomen width and major chela length) with respect to carapace length, shows that the pre-puberty and puberty ecdysis occur at 15 and 35 mm carapace length respectively, which was also confirmed by the gonad weight, vas deferens in males, and the onset of vitellogencsis in females.
4. A delay between anatomical and functional (i.e. the ability to copulate successfully) maturity was observed in the males. Being larger may be an advantage in intra-sexual competition for mating, but larger males, being more vagile, are also more likely to meet receptive females. The females may mate before their puberty moult and store sperms in their seminal receptacles for when they attain full maturity; this could be adaptive since opportunities of encountering males are few and far between in their adult phase, characterized by their vagile and amphibious habits.     

Multiple invasions into freshwater by pufferfishes (teleostei: tetraodontidae): a mitogenomic perspective

Pufferfishes of the Family Tetraodontidae are the most speciose group in the Order Tetraodontiformes and mainly inhabit coastal waters along continents. Although no members of other tetraodontiform families have fully discarded their marine lives, approximately 30 tetraodontid species spend their entire lives in freshwaters in disjunct tropical regions of South America, Central Africa, and Southeast Asia. To investigate the interrelationships of tetraodontid pufferfishes and thereby elucidate the evolutionary origins of their freshwater habitats, we performed phylogenetic analysis based on whole mitochondrial genome sequences from 50 tetraodontid species and closely related species (including 31 newly determined sequences). The resulting phylogenies reveal that the family is composed of four major lineages and that freshwater species from the different continents are independently nested in two of the four lineages. A monophyletic origin of the use of freshwater habitats was statistically rejected, and ancestral habitat reconstruction on the resulting tree demonstrates that tetraodontids independently entered freshwater habitats in different continents at least three times. Relaxed molecular-clock Bayesian divergence time estimation suggests that the timing of these invasions differs between continents, occurring at 0-10 million years ago (MA) in South America, 17-38 MA in Central Africa, and 48-78 MA in Southeast Asia. These timings are congruent with geological events that could facilitate adaptation to freshwater habitats in each continent.     

Phylogenetic relationships of the southern African freshwater crab fauna (Decapoda: Potamonautidae: Potamonautes) derived from multiple data sets reveal biogeographic patterning

The phylogenetic relationships among the southern African freshwater crab species were examined using partial sequence data from three mitochondrial genes (12S rRNA, 16S rRNA, and mtDNA COI) 26 morphological characters and 14 allozyme loci. The aims of the present study were firstly to determine whether freshwater crab species that live in the same geographic region share a close phylogenetic relationship. Secondly, to investigate whether hybridizing species are genetically closely related and thirdly, to test for the validity of subgenera based on the genetic data sets. Phylogenetic analysis based on sequence data revealed largely congruent tree topologies and some associations had consistently high bootstrap support, and these data did not support Bott's subgeneric divisions. The morphological data were less informative for phylogenetic reconstruction while the allozyme data generally supported patterns recovered by the sequence data. A combined analysis of all the data recovered two monophyletic clades, one comprised of small-bodied mountain stream species and the other clade consisting of large-bodied riverine species. The combined analyses reflected clear biogeographic patterning for these river crabs. In addition, there was a clear correlation between genetic distance values and the ability of sympatric species to hybridize.     

The importance of time scale and multiple refugia: incipient speciation and admixture of lineages in the butterfly Erebia triaria (Nymphalidae)

Evidence of four different Quaternary glacial stages has been found in NW Iberia. The different magnitude of these episodes probably conditioned the distribution of currently montane species. We examined if the population history of NW Iberian Erebia triaria butterflies reflected such an influence of different glacial stages. We also investigated whether these populations were post-glacially colonised from a single refugial area or several sources. For this, we performed phylogenetic analyses and coalescence simulations on mitochondrial DNA sequences of individuals from five NW Iberian locations. We analysed three additional populations as reference, i.e., Central Spain, the Pyrenees, and the Alps. One of the NW Iberian populations, a subspecies endemic to a particular mountain range (Xistral), showed a high level of genetic divergence from all other populations, regardless of their geographic distance. Isolation after an ancient glacial stage, and followed by allopatric differentiation, may account for such high differentiation. The genetic pattern shown by the rest of the NW Iberian population samples consisted of two lineages, likely reflecting that the ancestors of these populations sought for refuge in at least two different areas during a subsequent glacial stage. We showed evidence of both temporal and spatial divisions in the phylogeography of these butterflies. The congruence of this pattern with the geological history suggests that the Iberian Peninsula hosted several refugial areas that differed in area and location depending on the glacial stage.     

Evolution of physiological tolerance and performance during freshwater invasions

Invasive species that penetrate habitat boundaries are likelyto experience strong selection and rapid evolution. This studydocuments evolutionary shifts in tolerance and performance followingthe invasion of fresh water by the predominantly estuarine andsalt marsh copepod Eurytemora affinis. Common-garden experimentswere performed on freshwater-invading (Lake Michigan) and ancestralsaline (St. Lawrence marsh) populations to measure shifts inadult survival (at 0, 5, and 25 PSU), and survival during developmentand development time (both using full-sib clutches split across0, 5, 15, and 25 PSU). Results showed clear evidence of heritableshifts in tolerance and performance associated with freshwaterinvasions. The freshwater population exhibited a gain in low-salinitytolerance and a reduction in high-salinity tolerance relativeto the saline population, suggesting tradeoffs. These tradeoffswere supported by negative genetic correlations between survivalat fresh (0 PSU) versus higher salinities. Mortality in responseto salinity occurred primarily before metamorphosis, suggestingthat selection in response to salinity had acted primarily onthe early life-history stages. The freshwater population exhibitedcurious patterns of life-history evolution across salinities,relative to the saline population, of retarded development tometamorphosis but accelerated development from metamorphosisto adulthood. This pattern might reflect tradeoffs between developmentrate and survival in fresh water at the early life-history stages,but some other selective force acting on later life-historystages. Significant effects of clutch (genotype) and clutch-by-salinityinteraction (G x E) on survival and development time in bothpopulations indicated ample genetic variation as substrate fornatural selection. Variation for high-salinity tolerance waspresent in the freshwater population despite negative geneticcorrelations between high- and low-salinity tolerance. Resultsimplicate the importance of natural selection and document theevolution of reaction norms during freshwater invasions.     

Trace metals in marine,brackish and freshwater prawns (Crustacea,Decapoda) from northeast Algeria

The concentrations of the trace metals Zn, Cu, Fe, Cd and Pb were measured in four caridean decapods; Atyaephyra desmaresti, Palaemonetes varians, Parapenaeus longirostris and Aristeus antennatus, from freshwater , estuarine and marine habitats in northeast Algeria variably affected by anthropogenic metal contamination. The two coastal species (P. longirostris and A. antennatus) are a food source for the local population. Accumulated metal concentrations varied interspecifically, and intraspecifically between sites and between seasons, except in the case of Aristeus antennatus. The fresh and brackish water species (Atyaephyra desmaresti and Palaemonetes varians) accumulated more Cd and Pb than their marine counterparts. Results are discussed with respect to anthropogenic inputs and the environmental conditions of the regions studied.     

On the marine sister groups of the freshwater crabs (Crustacea: Decapoda: Brachyura)

Freshwater crab sister group relationships with marine eubrachyuran families were investigated. A morphology-based cladistic analysis was conducted on representatives of the freshwater crab families Deckeniidae, Gecarcinucidae, Parathelphusidae, Potamidae, Potamonautidae, Pseudothelphusidae, and Trichodactylidae using a disparate assemblage of marine heterotreme and thoracotreme brachyurans as possible sister groups. The monophyly of the freshwater crabs sensu lato is falsified. The family Trichodactylidae and the marine portunid subfamily Carcininae form basal groups within the superfamily Portunoidea. The monophyly of the Pseudothelphusidae and the Paleotropical freshwater crab families is supported, and this clade is the sister group of the Thoracotremata (Gecarcinidae, Grapsidae s.l., and Ocypodoidea). The origin, groundplan, and diversification of freshwater crabs are discussed in the context of previously published scenarios of their evolution.     

Early embryonic development of the freshwater shrimp Caridina multidentata (Crustacea,Decapoda, Atyidae)

Decapod crustaceans show a great diversity of developmental modes at all levels. In particular, early cleavage varies from total via mixed to superficial modes and from determinate cleavage with a stereotyped pattern to indeterminate cleavage. However, the ground pattern of early decapod development is not clear. To address this problem, we studied the early embryonic development of the caridean shrimp Caridina multidentata with a combination of confocal laser scanning microscopy, scanning electron microscopy, 4D microscopy and 3-D reconstruction software. Despite a yolk-rich egg, the cleavage is holoblastic and shows a distinct pattern of blastomere arrangement, characterized by two interlocking cell bands. This resembles the conditions in dendrobranchiate shrimps, which most likely are the sister group to Pleocyemata to which C. multidentata belongs. Hence, our results offer the possibility to assume total cleavage with blastomeres arranged in two interlocking cell bands as ancestral cleavage mode for Decapoda.     

Aggressive interactions between three species of freshwater crayfish of the genus Cherax (Decapoda: Parastacidae)

The freshwater crayfish, Cherax destructor Clark, native to southeastern Australia, was first introduced to farm dams in southwestern Western Australia in 1932. The geographic range of the crayfish in Western Australia has increased substantially since then, and in recent years it has become established in natural waterways where it co-occurs with species of freshwater crayfish endemic to southwestern Australia, Cherax cainii and Cherax quinquecarinatus. The potential for competitive exclusion of these endemic species by C. destructor was investigated through laboratory experiments measuring aggressive behaviour. Body mass and species were found to be important factors governing aggressive dominance between C. cainii and C. destructor, with C. cainii winning significantly more interactions only when they were larger in body mass than their opponent. In trials between C. quinquecarinatus and C. destructor of similar body mass, there was no difference between the number of interactions 'won' by the two species. The implications for natural populations are discussed.     

The scale of divergence: A phylogenetic appraisal of intercontinental allopatric speciation in a passively dispersed freshwater zooplankton genus

Molecular studies have enlightened our understanding of freshwater zooplankton biogeography, yet questions remain regarding the scale and commonality of geographic speciation. Here, we present a mtDNA-based phylogenetic hypothesis for 92 Daphnia species from all seven continents, with a focus on North and South America, Europe, and Australia, and use it to explore the frequency, scale, and geographical orientation of allopatric divergence events. Allopatric speciation can conservatively account for at least 42% of cladogenetic events among the species included in our study; most of these involve intercontinental splits. Closely related species pairs are concentrated in the circumarctic region and between northern and southern continents, aligned with bird migration routes, suggesting recent dispersal. By contrast, deeper phylogenetic patterns are consistent with vicariance scenarios linked to continental fragmentation. The possible reasons for the puzzling persistence of these ancient patterns in light of the eroding force of dispersal are considered. Our results demonstrate the high frequency and complex pattern of allopatric speciation in this ancient, passively dispersed genus.     

Accelerating rates of freshwater invasions in the catchment of the River Thames

We identify a total of 96 freshwater non-indigenous species established in the River Thames catchment, England; of which 55 % were introduced intentionally. Our analysis shows that 53 % of the species became established in the last 50 years and invasion rates have significantly increased since 1800. Analysis of shipping activity and population size in the catchment area revealed a positive correlation with non-indigenous species discovery, suggesting that globalisation has facilitated many species invasions. Our calculated modern (post 1961) invasion rates reveal that one non-indigenous species is discovered every 50 weeks, despite legislation aiming to prevent introductions, making the Thames catchment among the most highly invaded freshwater systems in the world. Although sympatric invaders are expected to interact and alter one another’s impact, most studies focus on individual conspicuous invaders. Our results indicate that it is essential to comprehend multiple invasions in future work.     

Macro-invertebrate predators of freshwater pulmonate snails in Africa,with particular reference to Appasus grassei (Heteroptera) and Procambarus clarkii (Decapoda)

A range of African and alien macro-invertebrates has been reported preying on freshwater pulmonate snails, including those that serve as intermediate hosts for bloodflukes of the genus Schistosoma. Predation by five molluscivorous taxa is reviewed here: indigenous leeches (Glossiphoniidae), marsh fly larvae (Sciomyzidae), waterbugs (Belostomatidae), crabs (Potamonautidae) and invasive crayfish (Astacidae). Common features are a lack of prey specificity but clear prey-size specificity. Attention is drawn to the ability of invasive snail species (Physidae and Lymnaeidae) to avoid predation by several of these taxa. Evidence suggests that only the alien invasive crayfish Procambarus clarkii has potential as a snail biocontrol agent, but that its use should not be encouraged.     

Structural changes in the spermatophore of the freshwater 'red claw' crayfish Cherax quadricarinatus (Von Martens, 1898) (Decapoda, Parastacidae)

López Greco, L.S. and Lo Nostro, F.L. 2007. Structural changes in the spermatophore of the freshwater ‘red claw’ crayfish Cherax quadricarinatus (Von Martens, 1898) (Decapoda, Parastacidae). —Acta Zoologica (Stockholm) 88 : 000–000 The structure of the spermatophore was studied in Cherax quadricarinatus. Pieces of the distal vas deferens and transferred spermatophore from the females were fixed, cut and stained. Within the distal vas deferens, the primary layer and the secondary layer of the spermatophore were distinguishable. In the latter, two components were detected: cytoplasmic droplets and a homogeneous matrix. During the first 10 minutes post‐extrusion the cytoplasmic droplets drastically changed from looking like ‘empty droplets’; at this time the spermatophore changed from a liquid stage to a sticky one. One hour after extrusion the spermatophore began to harden and within the first 24–48 h post‐mating it was a solid and intense white structure tightly attached to the female; after 72 h it acquired a softer aspect, completely dehiscing between 96 and 120 h post‐mating. Histologically, the primary layer maintained its integrity surrounding the spermatozoa while the secondary layer lost the cytoplasmic droplets. The spermatophore began to hydrate between 24 and 48 h and by 72–96 h many sections of the sperm cord began to coalesce. From 48 h post‐mating some fissures appeared within the matrix that enlarged between 72 and 120 h. We propose that both manipulation by the female and hydration are the mechanisms involved in the release of the spermatozoa from the spermatophore.