Pattern and process in the distribution of North American freshwater fish

Published species lists were analysed to determine the contributions of dispersal, habitat preference, river channel size, body size, and glacial history to large‐scale patterns in freshwater fish species richness in North America, north of central Mexico. Total species richness declines to the north and west but the pattern for endemics differs from that of widespread species. Mississippi Basin regions are more species rich than more isolated, coastal, regions. Richness declines more rapidly with increasing latitude in riverine specialist than in habitat generalist species. Levels of endemism are greatest in species found in small‐ to medium‐sized river channels. The strong Rapoport effect, more marked in migratory than resident species, is correlated with habitat preference, channel size, and glacial history. Body size increases with latitude, largely as a result of a trend from small resident to large migrant species. In unglaciated regions, ancestral species survived in large habitats because these are longer‐lived, more extensive, less isolated and more stable than headwaters, permitting larger populations and lower extinction levels. Reduced levels of gene flow in small, peripheral, channels isolated by larger downstream habitats have resulted in the production of many, small range, small‐bodied species. The latitudinal richness gradient is a consequence of speciation and extinction events in unglaciated faunas and an increasing domination of faunas by generalist, large bodied, large channel, recolonizing species in more northern regions. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 100 , 46–61.     

Conservation status of the North American fish fauna in fresh water

The status of the North American fish fauna includes 292 species of fishes in the categories of endangered, vulnerable, rare, indeterminate, and extinct. This constitutes 28% of the known fauna. The status of fishes and their habitats continues to decline, especially in the arid regions of western U.S.A. and northern Mexico. The Endangered Species Act is the most powerful tool currently available to protect rare fishes. While many fishes probably have been saved from extinction by this Act, surprisingly few have improved enough to be removed from under its protection.     

Between-year variation in community structure and biomass–size distributions of benthic lake fish communities

The benthic fish communities of 26 Swedish lakes were monitored annually with multi-mesh gillnets in a standardized way in the years 1994–1997. No major environmental changes (e.g. in nutrient level or acidity) occurred within the lakes during the 4 years of study. In most of the lakes, the between-year variation of biomass (per unit of effort) was close to the sampling precision, and biomass was usually less variable than abundance. Median values of lakespecific indices of variance compensation indicated no general covariance of biomass between species, but a tendency for positive covariance between size classes. This indicates that the benthic fish communities of small to intermediate-sized Swedish lakes most often show low between-year variation in total biomass of fish older than 0+, and that their biomass–size distributions are not, in general, shaped by periodic strong year-classes of keystone species. In a few individual lakes, density compensation was indicated as complementary proportions of a pair of species or size classes that made major contributions to the total biomass.     

Determinants of fine‐scale homogenization and differentiation of native freshwater fish faunas in a Mediterranean Basin: implications for conservation

Aim Increasing threats to freshwater biodiversity are rapidly changing the distinctiveness of regional species pools and local assemblages. Biotic homogenization/differentiation processes are threatening the integrity and persistence of native biodiversity patterns at a range of spatial scales and pose a challenge for effective conservation planning. Here, we evaluate the extent and determinants of fine‐scale alteration in native freshwater fish assemblages among stream reaches throughout a large river basin and consider the implications of these changes for the long‐term conservation of native fishes. Location Guadiana River basin (South‐Western Iberian Peninsula). Methods We quantified the magnitude of change in compositional similarity between observed and reference assemblages and its potential effect on natural patterns of compositional distinctiveness. Reference assemblages were defined as the native species expected to occur naturally (in absence of anthropogenic alterations) and were reconstructed using a multivariate adaptive regression splines predictive model. We also evaluated the role of habitat degradation and introduced species as determinants of biotic homogenization/differentiation. Results We found a significant trend towards homogenization for native fish assemblages. Changes in native fish distributions led to the loss of distinctiveness patterns along natural environmental gradients. Introduced species were the most important factor explaining the homogenization process. Homogenization of native assemblages was stronger in areas close to reservoirs and in lowland reaches where introduced species were more abundant. Main conclusions The implementation of efficient conservation for the maintenance of native fish diversity is seriously threatened by the homogenization processes. The identification of priority areas for conservation is hindered by the fact that the most diverse communities are vanishing, which would require the selection of broader areas to adequately protect all the species. Given the principal role that introduced species play in the homogenization process and their relation with reservoirs, special attention must be paid to mitigating or preventing these threats.     

Discovery of cryptic species among North American pine‐feeding Chionaspis scale insects (Hemiptera: Diaspididae)

Cryptic species are present in many animal groups and they may be best detected through large sample sizes collected over broad geographic ranges. Fine‐scale local adaptation has been hypothesized to occur in armoured scale insects (Hemiptera: Diaspididae) and a consequence of this process may be multiple cryptic species. We estimate species diversity of pine‐feeding Chionaspis scale insects across North America by inferring species boundaries using genealogical concordance across allele genealogies of two nuclear loci and one mitochondrial locus. Our ingroup sample includes 366 individual insects from 320 localities and 51 host species within the Pinaceae. We also conducted a morphological survey of all insect specimens and assigned them as either one of the two currently recognized pine‐feeding species, Ch. heterophyllae, Ch. Pinifoliae, or with undescribed morphology. Using maximum likelihood allele genealogies in a majority‐rule consensus to assess congruence, we conservatively detect ten species in this group. Most of these species are robust to alternative methods of genealogical inference (Bayesian inference, maximum parsimony) and a few are robust to the use of strict consensus to assess congruence. Species show both narrow and more widespread ranges where almost half of the individuals sampled belong to a single very widespread polyphagous species. © 2011 The Linnean Society of London, Biological Journal of the Linnean Society, 2011, 104 , 47–62.     

Body size and premolar evolution in the early‐middle eocene euprimates of Wyoming

The earliest euprimates to arrive in North America were larger‐bodied notharctids and smaller‐bodied omomyids. Through the Eocene, notharctids generally continued to increase in body size, whereas omomyids generally radiated within small‐ and increasingly mid‐sized niches in the middle Eocene. This study examines the influence of changing body size and diet on the evolution of the lower fourth premolar in Eocene euprimates. The P₄ displays considerable morphological variability in these taxa. Despite the fact that most studies of primate dental morphology have focused on the molars, P₄ can also provide important paleoecological insights. We analyzed the P₄ from 177 euprimate specimens, representing 35 species (11 notharctids and 24 omomyids), in three time bins of approximately equal duration: early Wasatchian, late Wasatchian, and Bridgerian. Two‐dimensional surface landmarks were collected from lingual photographs, capturing important variation in cusp position and tooth shape. Disparity metrics were calculated and compared for the three time bins. In the early Eocene, notharctids have a more molarized P₄ than omomyids. During the Bridgerian, expanding body size range of omomyids was accompanied by a significant increase in P₄ disparity and convergent evolution of the semimolariform condition in the largest omomyines. P₄ morphology relates to diet in early euprimates, although patterns vary between families. Am J Phys Anthropol 153:15–28, 2014. © 2013 Wiley Periodicals, Inc.     

Increasing habitat complexity on seawalls: Investigating large‐ and small‐scale effects on fish assemblages

The construction of artificial structures in the marine environment is increasing globally. Eco‐engineering aims to mitigate the negative ecological impacts of built infrastructure through designing structures to be multifunctional, benefiting both humans and nature. To date, the focus of eco‐engineering has largely been on benefits for benthic invertebrates and algae. Here, the potential effect of eco‐engineered habitats designed for benthic species on fish was investigated. Eco‐engineered habitats (“flowerpots”) were added to an intertidal seawall in Sydney Harbour, Australia. Responses of fish assemblages to the added habitats were quantified at two spatial scales; large (among seawalls) and small (within a seawall). Data were collected during high tide using cameras attached to the seawall to observe pelagic and benthic fish. At the larger spatial scale, herbivores, planktivores, and invertebrate predators were generally more abundant at the seawall with the added flowerpots, although results were temporally variable. At the smaller spatial scale, certain benthic species were more abundant around flowerpots than at the adjacent control areas of seawall, although there was no general pattern of differences in species density and trophic group abundance of pelagic fish between areas of the seawall with or without added habitats. Although we did not find consistent, statistically significant findings throughout our study, the field of research to improve fish habitat within human‐use constraints is promising and important, although it is in its early stages (it is experimental and requires a lot of trial and error). To advance this field, it is important to document when effects were detected, and when they were not, so that others can refine the designs or scale of habitat enhancements or their study approaches (e.g., sampling protocols).     

Fine‐scale habitat preferences influence within‐river population connectivity: a case‐study using two sympatric New Zealand Galaxias fish species

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Identifying climatic niche shifts using coarse‐grained occurrence data: a test with non‐native freshwater fish

Aim We tested whether coarse‐grained occurrence data can be used to detect climatic niche shifts between native and non‐native ranges for a set of widely introduced freshwater fishes. Location World‐wide. Methods We used a global database of freshwater fish occurrences at the river basin scale to identify native and non‐native ranges for 18 of the most widely introduced fish species. We also examined climatic conditions within each river basin using fine‐grained climate data. We combined this information to test whether climatic niche shifts have occurred between native and non‐native ranges. We defined climatic niche shifts as instances where the ranges of a climatic variable within native and non‐native basins exhibit zero overlap. Results We detected at least one climatic niche shift for each of the 18 studied species. However, we did not detect common patterns in the thermal preference or biogeographic origin of the non‐native fish, hence suggesting a species‐specific response. Main conclusions Coarse‐grained occurrence data can be used to detect climatic niche shifts. They also enable the identification of the species experiencing niche shifts, although the mechanisms responsible for these shifts (e.g. local adaptation, dispersal limitation or physiological constraints) have yet to be determined. Furthermore, the coarse‐grained approach, which highlights regions where climatic niche shifts have occurred, can be used to select specific river basins for more detailed, fine‐grained studies.     

Habitat preferences and habitat restoration options for small‐bodied and juvenile fish species in the northern Murray–Darling Basin

Degradation of instream habitats in the northern Murray–Darling Basin has occurred through numerous stressors, including siltation, clearing of bankside vegetation, intrusion of livestock and impacts of pest species. A better understanding of habitat preferences of native fish species could help guide future instream habitat restoration actions. The habitat choices of seven native fish species, juvenile Murray Cod (Maccullochella peelii), juvenile Golden Perch (Macquaria ambigua ambigua), juvenile Silver Perch (Bidyanus bidyanus), adult Murray–Darling Rainbowfish (Melanotaenia fluviatilis), adult Olive Perchlet (Ambassis agassizii), adult Un‐specked Hardyhead (Craterocephalus stercusmuscarum fulvus) and adult carp gudgeons (Hypseleotris spp.) were tested in preference troughs to help inform potential habitat restoration actions in the Condamine catchment. Each species was given a choice between pair combinations of open sandy habitat, submerged macrophytes, emergent plants and rocky rubble. Habitat preferences varied between species. Murray Cod, Golden Perch, carp gudgeons and Olive Perchlets preferred structure over open sandy habitat, whilst juvenile Silver Perch, Un‐specked Hardyhead and Murray–Darling Rainbowfish did not avoid open sandy habitats. Juvenile Murray Cod preferred rocky rubble habitat over all other habitat choices. Use of complex rock piles to provide nursery habitat for Murray Cod populations is a potential restoration option. Introduction of rock could also benefit Golden Perch and carp gudgeons. Use of emergent plants, submerged macrophytes and rocky rubble for habitat restoration all appear to have merit for one or more species of small‐bodied fishes or juvenile stages of larger sized fishes. Rocky rubble or floating attached macrophytes could be viable restoration options in areas too turbid to establish submerged macrophytes. These habitat interventions would complement existing actions such as re‐snagging and provision of fish passage to assist with sustainable management of native fish populations.     

When species become generalists: on‐going large‐scale changes in bird habitat specialization

Aim Species specialization is often considered as a stable species characteristic over the short term. However, this assumption has hardly been tested, even though it may impair our ability to track the impoverishment of biodiversity induced by the rapid replacement of specialists by generalists. We tested whether species specialization in birds varied over a short period of time, and assessed whether variations in species specialization influence community‐level metrics of biotic homogenization. Location France. Methods We studied the variations in specialization to habitat closure of 94 bird species over the period 2002–08, accounting for species variations in mean density, habitat preference and migratory status. We then quantified the temporal changes in a community specialization index, which measures functional homogenization. Results Specialization decreased over time for 35 species (37%), while 46 (49%) showed non‐significant negative trends and 13 (14%) had null or non‐significant positive trends. The more a species was specialized at the beginning of the study, the more it generalized. We additionally found that changes in the specialization level were density dependent: 34 species (36%) became more generalist in years of higher densities while only one became more specialized. At the community level, accounting for this inter‐annual variability in species specialization accentuated the trend in the functional homogenization of bird communities. Main conclusions Habitat specialization is a labile ecological trait, which may change in the short term following habitat degradation, density dependence and source–sink dynamics. Accounting for short‐term temporal variations in observed habitat specialization of species can increase our understanding of the effects of global changes on species strategies and community dynamics.     

Projected impacts of climate change on spatio‐temporal patterns of freshwater fish beta diversity: a deconstructing approach

Aim To assess the potential impacts of future climate change on spatio‐temporal patterns of freshwater fish beta diversity. Location Adour–Garonne River Basin (France). Methods We first applied an ensemble modelling approach to project annually the future distribution of 18 fish species for the 2010–2100 period on 50 sites. We then explored the spatial and temporal patterns of beta diversity by distinguishing between its two additive components, namely species turnover and nestedness. Results Taxonomic homogenization of fish assemblages was projected to increase linearly over the 21st century, especially in the downstream parts of the river gradient. This homogenization process was almost entirely caused by a decrease in spatial species turnover. When considering the temporal dimension of beta diversity, our results reveal an overall pattern of decreasing beta diversity along the upstream–downstream river gradient. In contrast, when considering the turnover and nestedness components of temporal beta diversity we found significant U‐shaped and hump‐shaped relationships, respectively. Main conclusions Future climate change is projected to modify the taxonomic composition of freshwater fish assemblages by increasing their overall similarity over the Adour–Garonne River Basin. Our findings suggest that the distinction between the nestedness and turnover components of beta diversity is not only crucial for understanding the processes shaping spatial beta‐diversity patterns but also for identifying localities where the rates of species replacement are projected to be greatest. Specifically we recommend that future conservation studies should not only consider the spatial component of beta diversity but also its dynamic caused by climate warming.     

Habitat‐related patterns in phenotypic variation in a New Zealand freshwater generalist fish,and comparisons with a closely related specialist

1. Within‐species phenotypic variation is hugely variable and may play a role in determining the range of habitats a species can exploit. Our study addressed two main questions: 1. does phenotypic variation allow some species (i.e. habitat‐generalists) to use heterogeneous habitats and 2. are habitat‐generalists more variable than species occupying relatively homogeneous environments (i.e. habitat‐specialists)? 2. We examined the morphology of the common bully (Gobiomorphus cotidianus), a habitat‐generalist eleotrid fish found in lakes and rivers throughout New Zealand. We also compared the level of morphological variability in common bullies with that in the closely related redfin bully (Gobiomorphus huttoni), a habitat‐specialist of moderate‐ and fast‐flowing rivers. 3. Common and redfin bullies were collected from the South Island of New Zealand. A series of body and fin measurements were made, and cephalic dorsal head pores of the mechanosensory lateral‐line system were counted. The pores and associated canal neuromasts are important for prey detection and predator avoidance in other species, particularly, in turbulent conditions where the effectiveness of superficial neuromasts may be compromised. 4. The common bully had more dorsal head pores in fish from rivers than in those from lakes. This pattern was apparent only in adults, suggesting that selective pressures associated with adult habitat, be it rivers or lakes, are responsible. 5. As expected, there was greater phenotypic variability in the generalist common bully than in the specialist redfin bully, particularly with regard to the sensory pores, suggesting their importance for survival in turbulence. 6. We identified habitat‐related patterns in phenotypic variability in a generalist species and demonstrated a link between phenotypic variability and habitat breadth. Variation in the common bully may explain its ability to occupy a range of habitats.     

Mixed‐source reintroductions lead to outbreeding depression in second‐generation descendents of a native North American fish

Reintroductions are commonly employed to preserve intraspecific biodiversity in fragmented landscapes. However, reintroduced populations are frequently smaller and more geographically isolated than native populations. Mixing genetically, divergent sources are often proposed to attenuate potentially low genetic diversity in reintroduced populations that may result from small effective population sizes. However, a possible negative tradeoff for mixing sources is outbreeding depression in hybrid offspring. We examined the consequences of mixed‐source reintroductions on several fitness surrogates at nine slimy sculpin (Cottus cognatus) reintroduction sites in south‐east Minnesota. We inferred the relative fitness of each crosstype in the reintroduced populations by comparing their growth rate, length, weight, body condition and persistence in reintroduced populations. Pure strain descendents from a single source population persisted in a greater proportion than expected in the reintroduced populations, whereas all other crosstypes occurred in a lesser proportion. Length, weight and growth rate were lower for second‐generation intra‐population hybrid descendents than for pure strain and first‐generation hybrids. In the predominant pure strain, young‐of the‐year size was significantly greater than any other crosstype. Our results suggested that differences in fitness surrogates among crosstypes were consistent with disrupted co‐adapted gene complexes associated with beneficial adaptations in these reintroduced populations. Future reintroductions may be improved by evaluating the potential for local adaptation in source populations or by avoiding the use of mixed sources by default when information on local adaptations or other genetic characteristics is lacking.