Ecospace utilization in early Phanerozoic deep-marine environments: deep bioturbation in the Blakely Sandstone (Middle Ordovician), Arkansas, USA

Ichnofabric analysis of alternating light and dark-coloured mudstone layers in the Blakely Sandstone (Middle Ordovician) at Crystal Springs Landing, Lake Ouachita (west of Hot Springs, western Arkansas, USA) reveals two equilibrium palaeoichnocoenoses. The first was emplaced under variable, but low, oxygen levels during deposition of the dark-coloured layers; small diameter transition layer burrows overprint a mixed layer ichnofabric. The transition layer infauna was tiered with abundant Chondrites representing the deeper of two shallow tiers. Light-coloured layers accumulated during prolonged intervals in which the sediments were oxygenated to a greater extent and depth. Preservation of a mixed layer ichnofabric within them is the result of limited, but deep (up to at least 400 mm), reworking subsequently in the transition layer by an equilibrium community. These transition layer trace fossils are not tiered. If representative of oxygenated sediment columns in Ordovician deep-marine environments, an extensive volume of infaunal ecospace was colonized (in this case by deposit feeders); its more efficient use subsequently, including vertical partitioning of the infaunal community into specific environmental niches (tiering), could have accommodated increases in diversity and community complexity. Changes over time in the maximum depth to which sediments were bioturbated, alone, would therefore be a poor measure of the extent of ecospace utilization.     

Current known range of the Platte River caddisfly, Ironoquia plattensis, and genetic variability among populations from three Nebraska Rivers

The Platte River caddisfly (Ironoquia plattensis Alexander and Whiles 2000) was recently described from a warm-water slough along the Platte River in central Nebraska and was considered abundant at the type locality. Surveys of 48 sites in 1999 and 2004 found eight additional sites with this species on the Platte River. The caddisfly was not found at the type locality in 2004 and one additional site in 2007, presumably because of drought conditions. Because of its apparent rarity and decline, the Platte River caddisfly is a Tier I species in Nebraska. For this project, surveys for the caddisfly were conducted at 113 new and original sites primarily along the Platte, Loup, and Elkhorn Rivers between 2009 and 2011. These surveys identified 30 new sites with the caddisfly. Larval densities were quantified at a subset of inhabited sites, and there was a large variation of densities observed. Seven sites on other Nebraska drainages were found to support morphologically similar caddisflies, presumably the Platte River caddisfly. Because of the discovery of populations outside the Platte River drainage, amplified fragment length polymorphism (AFLP) was used to determine the amount of genetic variability and breeding among sites on the Platte, Loup, and Elkhorn Rivers. Analysis of molecular variance (AMOVA) suggested moderate gene flow among the three river systems and that there was more genetic variation within populations than between populations. Differentiation, but not total divergence, was exhibited by the northernmost population from the Elkhorn River. Because it may be considered an indicator species and is vulnerable to ongoing habitat loss and degradation, all Platte River caddisfly populations should be conserved.     

The effect of bioturbation by polychaetes (Opheliidae) on benthic foraminiferal assemblages and test preservation

Biological activity such as burrowing can alter benthic foraminiferal shell preservation and may also modify benthic foraminiferal assemblages by vertical mixing, inducing sediment homogenization. Here, we analyse benthic foraminiferal assemblages and taphonomy of upper Miocene marine deposits from Conil de la Frontera (Cádiz, south‐western Spain). The deposits consist of marls displaying a pervasive alternation of intensively bioturbated beds dominated by Macaronichnus segregatis traces (ichnofabric index 4–5) and non‐bioturbated beds. Benthic foraminiferal assemblages are dominated by Cibicidoides mundulus and Cibicides refulgens, indicating that the marls were deposited on an oligotrophic, well‐oxygenated upper slope. The impact of burrowing on the preservation of benthic foraminiferal tests was tested using Q‐mode cluster analysis, which found two well‐differentiated groups of samples, one including the non‐bioturbated beds and the other encompassing the bioturbated ones. Fragmentation and recrystallization account for the differentiation of these groups, both being higher in the bioturbated sediments. Aggressive chemical digestion by the Macaronichnus trace‐makers, assumed to be a polychaete worm of the family Opheliidae, etched the microfossil shells, making them more vulnerable to fragmentation. Intense bioturbation favoured the circulation of pore fluids, encouraging recrystallization. Pervasive burrowing resulted in significant vertical reworking of microfossils. As a consequence, benthic foraminiferal assemblages in the bioturbated beds were homogenized in the mixed layer; that is, the uppermost layer of the substrate totally burrowed. The alternation of bioturbated and non‐bioturbated beds reflects episodic transfer of food particles down slope from shallower parts of the shelf as well as from the continent due to storms under otherwise homogeneous oligotrophic marine conditions.     

<Emphasis Type="Italic">Rosselia socialis</Emphasis> in the Upper Marine Molasse of southwestern Germany

Sediments of the Miocene Upper Marine Molasse in southern Germany (southwestern Bavaria) represent a shallow marine, siliciclastic, and tide-influenced depositional environment. Three sections cutting through these sediments contain a distinct horizon of trace fossils. Preserved in a fine-grained quartz-sandstone are numerous more or less vertical burrows that are usually funnel-shaped, closely spaced, and locally branching. The burrows belong to the ichnospecies Rosselia socialis. The sequence-stratigraphic relevance of the Rosselia-horizons is discussed, and a hypothesis is put forward on the correlation of selected sections of the Upper Marine Molasse based on these layers.     

Detrital layers marking flood events in recent sediments of Lago Maggiore (N. Italy) and their comparison with instrumental data

1. A succession of 20 detrital layers was detected in five short cores from the Pallanza Basin in the western part of Lago Maggiore (Italy) by combining thin‐section analyses and high‐resolution micro‐X‐ray fluorescence (μ‐XRF) scanning techniques. The detrital layers range in thickness from 0.6 to 17.4 mm and appear most distinct in the upper 20–25 cm of each core, where eutrophication since the early 1960s resulted in the deposition of a dark, organic sediment matrix. 2. The age‐depth model of previously dated cores was transferred by precise intra‐basin correlation of distinct marker layers, thus providing a reliable chronology for the 20 detrital layers covering the time period 1965–2006. 3. All detrital layers are related to regional floods as recorded by short‐term lake level rises and peaks in discharge of the River Toce, the main tributary to the Pallanza Basin. 4. Detailed intra‐basin correlation of detrital layers allows us to distinguish river run‐off events from local erosion, as well as evaluate the relation between detrital layer thickness and flood amplitude. Massive clay accumulation on top of the thickest detrital layers might have affected lake ecology by attenuating light and influencing metabolic activity. 5. In the clastic‐dominated sediments deposited before 1965, detrital layers are less clearly discernible because of the predominantly clastic pelagic sediment matrix. The combination of thin‐section and μ‐XRF techniques, however, shows the potential to establish even longer flood layer time series from Lago Maggiore sediments.     

Meandering worms: mechanics of undulatory burrowing in muds

Recent work has shown that muddy sediments are elastic solids through which animals extend burrows by fracture, whereas non-cohesive granular sands fluidize around some burrowers. These different mechanical responses are reflected in the morphologies and behaviours of their respective inhabitants. However, Armandia brevis, a mud-burrowing opheliid polychaete, lacks an expansible anterior consistent with fracturing mud, and instead uses undulatory movements similar to those of sandfish lizards that fluidize desert sands. Here, we show that A. brevis neither fractures nor fluidizes sediments, but instead uses a third mechanism, plastically rearranging sediment grains to create a burrow. The curvature of the undulating body fits meander geometry used to describe rivers, and changes in curvature driven by muscle contraction are similar for swimming and burrowing worms, indicating that the same gait is used in both sediments and water. Large calculated friction forces for undulatory burrowers suggest that sediment mechanics affect undulatory and peristaltic burrowers differently; undulatory burrowing may be more effective for small worms that live in sediments not compacted or cohesive enough to extend burrows by fracture.     

Distribution of Bdellovibrio bacteriovorus in sewage works, river water, and sediments.

Bdellovibrio was found in all liquid phases of the sewage works examined. The predator was also found in all the river sediments and sewage-polluted river waters examined but could not be found in some unpolluted river waters. Bdellovibrio was able to multiply on the high numbers of bacteria present in the aerobic percolating filter film but could not survive in anaerobic sludge. Similarly, the predator was present in the aerobic surface layers of river sediments but not in the anaerobic bottom layers. The major source of Bdellovibrio in the polluted rivers examined were sewage works effluents, and numbers in both river water and sediment were correlated with river water quality. It was unlikely that Bdellovibrio was important in reducing numbers of other bacteria in either sewage or river sediment.     

Distribution of Bdellovibrio bacteriovorus in sewage works, river water, and sediments.

Bdellovibrio was found in all liquid phases of the sewage works examined. The predator was also found in all the river sediments and sewage-polluted river waters examined but could not be found in some unpolluted river waters. Bdellovibrio was able to multiply on the high numbers of bacteria present in the aerobic percolating filter film but could not survive in anaerobic sludge. Similarly, the predator was present in the aerobic surface layers of river sediments but not in the anaerobic bottom layers. The major source of Bdellovibrio in the polluted rivers examined were sewage works effluents, and numbers in both river water and sediment were correlated with river water quality. It was unlikely that Bdellovibrio was important in reducing numbers of other bacteria in either sewage or river sediment.     

Juvenile growth of a macrohabitat generalist tied to hydrological character of large‐river system

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Living foraminifera and total populations in salt marsh peat cores: Kelsey Marsh (Clinton, CT) and the Great Marshes (Barnstable, MA)

Common species of intertidal agglutinated benthic foraminifera in salt marshes in Massachusetts and Connecticut live predominantly at the marsh surface and in the topmost sediment (0–2.5 cm), but a considerable part of the fauna lives at depths of 2.5–15 cm. Few specimens are alive at depths of 15–25 cm, with rare individuals alive between 25–50 cm in the sediments. Specimens living between the sediment surface and 25 cm deep occur in all marsh settings, whereas specimens living deeper than 25 cm are restricted to cores from the lower and middle marsh, and have an irregular distribution-with-depth. Lower and middle marsh areas are bioturbated by metazoa, suggesting that living specimens reach these depths at least in part by bioturbation. High-marsh sediments in New England consist of very dense mats of Spartina patents or Distichlis spicata roots and are not bioturbated by metazoa. In this marsh region bioturbation by plant roots and vertical fluid motion may play a role in moving the foraminifera into the sediment. The depth-distribution of living specimens varies with species: living specimens of Trochammina inflata consistently occur at the deepest levels. This suggests that species have differential rates of survival in the sediment, possibly because of differential adaptation to severe dysoxia to anoxia, or because of differing food preferences. There is no simple correlation between depth-in-core and faunal diversity, absolute abundance, and species composition of the assemblages. It is therefore possible to derive a signal of faunal changes and thus the environmental changes that may have caused them from the complex faunal signal of fossil assemblages.     

Burrow utilization by yellowedge grouper,Epinephelus flavolimbatus,in the northwestern Gulf of Mexico

Synopsis Submersible dives were made on a site in the Gulf of Mexico 160 km southeast of Galveston, Texas in September 1984. Both yellowedge, Epinephelus flavolimbatus, and snowy grouper, E. niveatus, were observed utilizing shelter around rock ridge habitats. The yellowedge grouper also sought shelter within three types of burrows cut into soft sediment. Many of these burrows were significant excavations consisting of large trenches 7–8 m long, 2–3 m wide, and 1–1.5 m deep. Burrows were found in depths from 265 to 290 m. Tilefish, Lopholatilus chamaeleonticeps, also occur at this site, usually inhabiting the characteristic vertical burrows already described for this species. In four daytime submersible transects covering a linear distance of over 13000 m, we observed a total of 66 yellowedge groupers. Twenty-five were in burrows, 39 among rocks, and two over open bottom. It is suggested that this species may have an advantage over congeners that utilize only rocky habitat for cover. It may also compete for shelter with tilefish at depths where the two species overlap.Contribution No. 696, Harbor Branch Foundation, Inc. and Contribution No. 733, The University of Texas Marine Science Institute.     

Stock characteristics of shovelnose sturgeon in the lower Platte River, Nebraska

The objectives of this research were to evaluate the condition, size structure, and growth of shovelnose sturgeon (Scaphirhynchus platorynchus) in the lower Platte River, Nebraska. A total of 1338 shovelnose sturgeon was collected using drifted gill and trammel nets (n = 954), trot lines (n = 340), and benthic trawls (n = 44) in the spring, summer, and autumn from four reaches: (i) Two Rivers State Park, (ii) confluence of Platte and Elkhorn rivers (iii) Louisville, Nebraska, and (iv) confluence of Platte and Missouri rivers during the spring, summer, and autumn of 2000 through 2004. Structural and condition indices were compared among reaches and years. Incremental relative stock densities (RSD) for shovelnose sturgeon sampled throughout the entire lower Platte River were: stock‐quality (1), quality‐preferred (12), preferred‐memorable (82), and memorable‐trophy (5). Proportional stock values were >99 for all years. A significance was detected in RSD categories among reaches and years with larger length‐categories observed in the upstream reaches. Mean relative weight (W_r) for all shovelnose sturgeon was 86.5, indicating a fit population. Mean W_r showed no significant differences among years, but significance was detected among reaches and RSD categories. Shovelnose sturgeon in the lower Platte River appear to be in good condition and exhibit different length‐frequency distributions longitudinally.     

Use of Shields stress to reconstruct and forecast changes in river metabolism

1. Discharge patterns of streams and rivers may be substantially affected by changes in water management, land use, or climate. Such hydrological alterations are likely to influence biotic processes, including overall ecosystem metabolism (photosynthesis and respiration). One regulator of aquatic ecosystem metabolism directly tied to hydrology is movement of bed sediments. 2. We propose that ecosystem metabolism can be reconstructed or predicted for any suite of hydrological conditions through the use of quantitative relationships between discharge, bed movement and metabolism. We tested this concept on a plains reach of the South Platte River in Colorado. 3. Movement of bed sediments was predicted from river discharge and the Shields stress, a ratio of velocity‐induced stress to sediment grain size. Quantitative relationships were established empirically between metabolic response to bed movement and recovery from bed movement, thus linking metabolism to hydrology. 4. The linkage of metabolism to hydrology allowed us to reconstruct daily photosynthesis and respiration over the 70‐year period for which discharge is known at our study site on the South Platte River. The reconstruction shows major ecological change caused by hydrological manipulation: the river has lost two‐thirds of its photosynthetic potential, and the ratio of photosynthesis to respiration is now much lower than it was prior to 1960. 5. The same approach could be used to anticipate ecological responses to proposed hydrological manipulations, to quantify benefits of hydrological restoration, or to illustrate potential effects of change in climate or land use on flowing‐water ecosystems.     

Habitat and sediment preferences ofAxarus festivus larvae

During fall draw-down of a reservoir in northeast Kansas it was observed that larvae ofAxarus festivus were restricted to highly weathered Pennsylvanian Shale outcrops and surrounding coarse sediments with high-clay content derived from erosion of the shale outcroppings. Larvae constructed burrows into the outcrops and eroded coarse sediments, which they used to filter feed by setting up currents through the burrows. Burrows were widely distributed over the outcrops, with average densities ranging from 372–2,351 burrows m^–2. However, closer inspection revealed that burrows were more common at apices of individual shale strata, where weathering of the outcrop was most advanced. Here burrows were more uniformly distributed and densities ranged to 4,166 burrows m^–2. 73% of burrows contained larvae. Burrows were generally U-shaped, and averaged 1.8 mm in diameter and 42 mm in total length. Laboratory experiments revealed that 4th instar larvae removed from burrows could construct new burrows in weathered shale, but preferentially used old empty burrows if available. When given choices among alternative sediment combinations of sandvs. finely-ground shale, sandvs. coarsely-ground shale, and finely-ground shalevs. coarsely-ground shale, larvae exhibited statistically significant preferences for the finely-ground shales (P<0.001), coarsely-ground shales (P<0.001), and coarsely-ground shales (P<0.01), respectively. It is concluded that larvae (1) actively select shale or high-clay content sediments, (2) can differentiate among sediments with differing physical properties and (3) exhibit behavioral choices for sediment types that guide them toward shale outcrops.     

Distribution and bioavailability of heavy metals in different particle-size fractions of sediments in Taihu Lake,China

Abstract

Taihu Lake is one of the most important water sources in the economically developed central-eastern part of China, and metal pollution is a major concern for the lake. The distribution and bioavailability of Cd, Cr, Cu, Pb, Sb and Zn were analysed in undifferentiated bottom sediments and in various particle-size fractions of the sediment from different parts of the lake. The average concentration of total metals in undifferentiated sediments ranged from 0.86 mg kg^-1 (Cd) to 95.45 mg kg^-1 (Zn) for the entire lake, with the highest concentrations in Zhushan Bay. The concentration of heavy metals was higher in extremely fine sands (0.064–0.125 mm) and fine sands (0.125–0.25 mm) than in other fractions. Sequential extractions showed that Cu, Zn and Cd were the most bioavailable accounting for 55.6%, 38.7% and 30.0% of their total concentration, respectively. However, the bioavailable proportion of many metals was not significantly different between grain grades except for Cu and Zn, which were higher in silts (<0.064 mm) than in other grades. Compared with the background values of local soils, the concentration of Zn, Cd, Cu, Pb and Sb was higher, indicating enrichment in the sediment. From ecological safety concerns, Zn, Cd and Cu should be examined closely because of their higher bioavailabilty in the sediment.     

美国威斯康星州的Lower Fox River和Lower Green Bay水域的污染沉积物对鱼类影响的研究

LowerFoxRiver和LowerGreenBy水域的沉积物造成了该地区的轻度污染。经测定和分析,沉积物中含有较高的PCBs和较低含量的PCDFs及PCDDs,在鱼样品中呈现有PCBs和农药。组织病理学检查,鱼体内寄生虫感染发生率较高,部分肝组织坏死,出现肉芽瘤状物,胰腺纤维化,但没有发现鱼体上有肿瘤。     

Effects of the burrowing mud shrimp,Upogebia yokoyai,on carbon flow and microbial activity on a tidal flat

Mud shrimps, Upogebia spp., are major constituents of macrobenthic communities in tidal flats in Japan. The impact of Upogebia yokoyai on carbon flow on tidal flats was examined by comparing CO₂ emission rates from plots with and without burrows in the Kurose River estuary, Japan. In situ CO₂ emission rates from plots with burrows were significantly higher than from those without. Laboratory measurements using sediment core samples that excluded respiration of macrobenthic organisms showed similar trends. Although there were no significant differences in grain size distribution, water content, or ignition loss between the sediment cores with and without burrows, oxidation–reduction potential was significantly higher in sediment cores with burrows. Analysis of phospholipid fatty acids (PLFA) indicated that microbial biomass and community structure did not differ significantly between cores with and without burrows. However, microbial respiration activity, as indicated by CO₂ emission rates per total PLFA content, was significantly higher in sediment cores with burrows than in those without. Our results indicate that burrows of U. yokoyai change the physicochemical conditions and increase microbial activity in the sediment, significantly affecting carbon flow in the tidal flat.     

Bioturbation: impact on the marine nitrogen cycle

Sediments play a key role in the marine nitrogen cycle and can act either as a source or a sink of biologically available (fixed) nitrogen. This cycling is driven by a number of microbial remineralization reactions, many of which occur across the oxic/anoxic interface near the sediment surface. The presence and activity of large burrowing macrofauna (bioturbators) in the sediment can significantly affect these microbial processes by altering the physicochemical properties of the sediment. For example, the building and irrigation of burrows by bioturbators introduces fresh oxygenated water into deeper sediment layers and allows the exchange of solutes between the sediment and water column. Burrows can effectively extend the oxic/anoxic interface into deeper sediment layers, thus providing a unique environment for nitrogen-cycling microbial communities. Recent studies have shown that the abundance and diversity of micro-organisms can be far greater in burrow wall sediment than in the surrounding surface or subsurface sediment; meanwhile, bioturbated sediment supports higher rates of coupled nitrification-denitrification reactions and increased fluxes of ammonium to the water column. In the present paper we discuss the potential for bioturbation to significantly affect marine nitrogen cycling, as well as the molecular techniques used to study microbial nitrogen cycling communities and directions for future study.     

Molecular Detection of Campylobacter spp. and Fecal Indicator Bacteria during the Northern Migration of Sandhill Cranes (Grus canadensis) at the Central Platte River

The risk to human health of the annual sandhill crane (Grus canadensis) migration through Nebraska, which is thought to be a major source of fecal pollution of the central Platte River, is unknown. To better understand potential risks, the presence of Campylobacter species and three fecal indicator bacterial groups (Enterococcus spp., Escherichia coli, and Bacteroidetes) was assayed by PCR from crane excreta and water samples collected during their stopover at the Platte River, Nebraska, in 2010. Genus-specific PCR assays and sequence analyses identified Campylobacter jejuni as the predominant Campylobacter species in sandhill crane excreta. Campylobacter spp. were detected in 48% of crane excreta, 24% of water samples, and 11% of sediment samples. The estimated densities of Enterococcus spp. were highest in excreta samples (mean, 4.6 × 10⁸ cell equivalents [CE]/g), while water samples contained higher levels of Bacteroidetes (mean, 5.1 × 10⁵ CE/100 ml). Enterococcus spp., E. coli, and Campylobacter spp. were significantly increased in river water and sediments during the crane migration period, with Enterococcus sp. densities (∼3.3 × 10⁵ CE/g) 2 to 4 orders of magnitude higher than those of Bacteroidetes (4.9 × 10³ CE/g), E. coli (2.2 × 10³ CE/g), and Campylobacter spp. (37 CE/g). Sequencing data for the 16S rRNA gene and Campylobacter species-specific PCR assays indicated that C. jejuni was the major Campylobacter species present in water, sediments, and crane excreta. Overall, migration appeared to result in a significant, but temporary, change in water quality in spring, when there may be a C. jejuni health hazard associated with water and crops visited by the migrating birds.     

ECHINOID AND CRUSTACEAN BURROWS AND THEIR DIAGENETIC SIGNIFICANCE IN THE MAASTRICHTIAN-DANIAN OF STEVNS KLINT, DENMARK

The increase in species and specimens of fossils in the uppermost part of the Maastrichtian White Chalk is interpreted as a result of reduced depth. The absence of bryozoans, brachiopods, and regular echinoids in the Cerithium Limestone indicates sedimentation in tidal pools. After sedimentation of the Cerithium Limestone, burrowing activity followed. A burrow of Brissopneustes danicus similar to burrows of the recent Echinocardium cordatum is described. Callianassa and its burrows are found in the Upper Danian calcarenite but not in the Lower Danian or Maastrichtian of Denmark. The dominant type of burrows along the Maastrichtian-Danian boundary has presumably been formed by the crustacean Ctenocheles.
The early post-Maastrichtian burrowing activity was succeeded by (1) induration of the bottom sediment and a slight abrasion (2) dissolution of aragonite shells and siliceous sponges, (3) offshore sedimentation and filling of the burrows with Lower Danian chalk mud, bryozoan fragments and other fossil remains, and (4) settling in the deeper part of the soft chalk sediment and precipitation of flint in or around burrows near the surface of the sediment.