Lipid-specific fluorescent probes in studies of biological membranes

Lipid-specific fluorescent probes are natural lipids carrying an apolar fluorophore in one of the hydrocarbon chains. Since such probes retain the head groups and resemble the molecular shape of native membrane lipids, they largely mimic the behaviour of their natural prototypes in biological membranes. Information provided by the lipid-specific probes is more differentiated and easier to interpret than that obtained from non-lipid probes. The principles of design of lipid-specific probes are formulated and the relative advantages and disadvantages of various fluorophores are discussed. In order to reduce ambiguities caused by perturbation of the probe environment, it is proposed to use, in a comparative manner, two or more lipid-specific probes resembling each other in all aspects except the polar head groups (the 'two probes' concept). Two types of fluorophores, the anthrylvinyl group and the perylenoyl group, were found to be well suited for the synthesis of lipid-specific probes. Use of both types of probes 'in tandem' opens new possibilities for studying lipid-protein and lipid-lipid interactions in biological membranes. The anthrylvinyl- and perylenoyl-labeled lipids were applied in studies of serum lipoproteins and erythrocyte membranes. A new highly sensitive ligand-receptor binding assay and a new approach to biological signal amplifying based on the use of lipid-specific probes are described.     

Partition coefficients of fluorescent probes with phospholipid membranes

A method for determination of membrane partition coefficients of five fluorescent membrane probes, 1,6-diphenyl-1,3,5-hexatriene (DPH), p-((6-phenyl)-1,3,5-hexatrienyl) benzoic acid (DPH carboxylic acid), 3-(p-(6-phenyl)-1,3,5-hexatrienyl)phenylpropionic acid (DPH propionic acid), 1-(4-trimethylammoniumphenyl)-6-phenyl-1,3,5-hexatriene (TMA-DPH) and N-4-(4-didecylaminostyryl)-N-methylpyridinium iodide (4-di-10-ASP), was developed utilizing the fluorescence enhancement of a constant probe concentration by titration with excess phospholipid liposomes. The partition coefficients of DPH, DPH carboxylic acid, DPH propionic acid, TMA-DPH and 4-di-10-ASP into dipalmitoylphosphatidylcholine membranes were determined to be 1.3.10(6), 1.0.10(6), 6.5.10(5), 2.4.10(5) and 2.8.10(6) respectively. Knowledge of the partition coefficients may help select a lipid concentration for membrane studies that necessitate a probe's dominant incorporation into membranes.     

Theoretical studies of phospholipid-glycophorin bilayer membranes using electron spin resonance and fluorescent probes

We have calculated the average value of the order parameter of a spin labelled lipid hydrocarbon chain in a DMPC bilayer containing a concentration c, of glycophorin, for a temperature above the main lipid phase transition temperature. We use the results of differential scanning calorimetry together with the results of other calculations to evaluate the parameters involved. To determine the orientation of the spin label, which is located near the glyceride backbone, we use the rotation isomeric model of hydrocarbon chains and allow for rocking and rotation of the chain. Our results are in good agreement with recent measurements and enable us to say that between about 200 and 1300 lipid molecules can be under the large glycophorin polar group ‘umbrella’ depending upon its conformation. In the case where this polar group adopts a ‘pancake’ conformation with about 1300 lipid molecules under it, we find that about 750–800 of them are perturbed and experience a reduced effective lateral pressure. We have calculated the average order parameter of a diphenylhexatriene (DPH) molecule under the same conditions as above, using the parameters determined there. We have used this calculation to predict the value of r_∞ that should be observed as a function of glycophorin concentration at T = 30°C. The predicted curve displays an unusual shape not observed in other lipid-protein bilayer membranes.     

Studies of light emission, absorption and energy transfer in nerve membranes labelled with fluorescent probes.

Physicochemical properties of fluorescent membrane probes, 2-p-Cl-anilinonaphthalene-6-sulfonate (p-Cl-ANS), 2-p-Br-anilinonaphthalene-6-sulfonate (p-Br-ANS), merocyanine-540, methyl violet, etc., were examined because of the possibility of demonstrating resonance energy-transfer between probes. The emission psectra of p-Cl-ANS and p-Br-ANS and the absorption (or fluorescence excitation) spectra of Eastman Kodak merocyanine-540 (M-540) and other probes were found to be very sensitive to changes in the solvent polarity. The spectra of these probes incorporated in the nerve membrane were determined and compared with the corresponding spectra in various organic solvents and macromolecules. This comparison suggests that the polarity of the binding sites for p-Cl-ANS (and p-Br-ANS) in the membrane is high and that of M-540 is very low. The spectrum of the portion of p-Cl-ANS fluorescence contributing to production of optical responses (i.e., transient changes during action potentials) was determined. Both absorption responses and fluorescence responses were detected from M-540 in the nerve membrane. It was possible to demonstrate resonance transfer of electronic energy from p-Cl-ANS to M-540 incorporated in lysolecithin micelles and in crab nerves. During action potentials, the intensity of M-540 fluorescence excited by energy transfer was found to undergo transient changes. Based on these and other experimental findings, properties of the binding sites for these probes in the nerve membranes are discussed.     

Membrane studies with polarity-dependant and excimer-forming fluorescent probes

1. The interaction of electron-transporting particles from heavy mitochondria of ox heart with several fluorescent probes was examined. 2. 1-Anilinonaphthalene-8-sulphonate and 2-(N-methylanilino)naphthalene-6-sulphonate both show an energy-dependent response. 3. Energy transfer between the electron-transporting particles and the dyes and the kinetics of the dye-particle interaction were studied in order to locate the binding regions in the membrane. 4. The energy-dependent probe responses were shown to be a result of changes in the quantum yield of fluorescence of the bound dyes together with increased binding of the dyes to the energized membrane. 5. Fluorescence lifetime measurements were also used to observe changes on energization. 6. A new type of probe was found in pyrene-3-sulphonate, which may be regarded as a ;volume indicator' for the internal membrane binding region, since it shows a concentration-dependent excimer fluorescence. 7. By comparing the responses of all these dyes when energized particles are uncoupled, a membrane transition with a time-constant of 2-3s is inferred.     

Directly labeled DNA probes using fluorescent nucleotides with different length linkers.

Directly labeled fluorescent DNA probes have been made by nick translation and PCR using dUTP attached to the fluorescent label, Cy3, with different length linkers. With preparation of probes by PCR we find that linker length affects the efficiency of incorporation of Cy3-dUTP, the yield of labeled probe, and the signal intensity of labeled probes hybridized to chromosome target sequences. For nick translation and PCR, both the level of incorporation and the hybridization fluorescence signal increased in parallel when the length of the linker arm is increased. Under optimal conditions, PCR yielded more densely labeled probes, however, the yield of PCR labeled probe decreased with greater linear density of labeling. By using a Cy3-modified dUTP with the longest linker under optimal conditions it was possible to label up to 28% of the possible substitution sites on the target DNA with reasonable yield by PCR and 18% by nick translation. A mechanism involving steric interactions between the polymerase, cyanine-labeled sites on template and extending chains and the modified dUTP substrate is proposed to explain the inverse correlation between the labeling efficiency and the yield of DNA probe synthesis by PCR.     

Advanced functional fluorescent probes for cell plasma membranes

Imaging the plasma membrane (PM) by fluorescence techniques using molecular fluorescent probes enable cell segmentation, studying membrane organization and dynamics, formation, and tracking of vesicles. Rational molecular design brings fluorescent PM probes to a new level, providing PM probes with new functions beyond basic PM staining and imaging. We herein review the latest advances in fluorescent PM probes for chemical and biophysical sensing as well as for super-resolution imaging.     

Rotation of fluorescent probes localized within lipid bilayer membranes

Measurements of the steady state polarization of fluorescence from perylene and 9-vinylanthracene embedded in bilayer membranes were performed as a function of temperature. Similar measurements were made when these probes were dissolved in hydrocarbons as model solvents. The effects of cholesterol and n-alkyl alcohol additions to bilayers and head group variation were also examined. Results were expressed in terms of the average rotation rates of the probes.At 25°C, the calculated rotation rate for perylene in egg phosphatidylcholine vesicles was 275 × 10⁶ sec^?1 as compared to 2400 × 10⁶ sec^?1 for perylene in n-hexadecane. However, the activation energies for probe rotation in both environments was about 7 kcal/mole suggesting similar rotational diffusion mechanisms. Membrane microviscosity evaluations were performed according to a recently published scheme and an assessment of this method of viscosity estimation was given. The presence of an approximately equimolar amount of cholesterol impeded probe rotation (90 × 10⁶ sec^?1 at 25°C) and reduced the activation energy (4.9 kcal/mole) for probe rotation. In contrast, addition of n-alkyl alcohols to the vesicle suspension acted to increase probe rotation rates, an indication of fluidization of the membranes. This is in accord with spin label and cation permeability data for similar membranes.It was concluded that this method of probing can adequately report changes in membrane dynamic structure when these changes occur uniformly over the membrane surface. The interpretation is less clear when structural changes occur only in patches or domains of the membrane thereby producing a non-uniform surface distribution of probes.     

Single molecule linear analysis of DNA in nano-channel labeled with sequence specific fluorescent probes

An array of nano-channels was fabricated from silicon based semiconductor materials to stretch long, native dsDNA. Here we present a labeling scheme in which it is possible to identify the location of specific sequences along the stretched DNA molecules. The scheme proceeds by first using the strand displacement activity of the Vent (exo-) polymerase to generate single strand flaps on nicked dsDNA. These single strand flaps are hybridized with sequence specific fluorophore-labeled probes. Subsequent imaging of the DNA molecules inside a nano-channel array device allows for quantitative identification of the location of probes. The highly efficient DNA hybridization on the ss-DNA flaps is an excellent method to identify the sequence motifs of dsDNA as it gives us unique ability to control the length of the probe sequence and thus the frequency of hybridization sites on the DNA. We have also shown that this technique can be extended to a multi color labeling scheme by using different dye labeled probes or by combining with a DNA- polymerase-mediated incorporation of fluorophore-labeled nucleotides on nicking sites. Thus this labeling chemistry in conjunction with the nano-channel platform can be a powerful tool to solve complex structural variations in DNA which is of importance for both research and clinical diagnostics of genetic diseases.     

Imaging organelle membranes in live cells at the nanoscale with lipid-based fluorescent probes

Understanding how organelles interact, exchange materials, assemble, disassemble, and evolve as a function of space, time, and environment is an exciting area at the very forefront of chemical and cell biology. Here, we bring attention to recent progress in the design and application of lipid-based tools to visualize and interrogate organelles in live cells, especially at super resolution. We highlight strategies that rely on modification of natural lipids or lipid-like small molecules ex cellula, where organelle specificity is provided by the structure of the chemically modified lipid, or in cellula using cellular machinery, where an enzyme labels the lipid in situ. We also describe recent improvements to the chemistry upon which lipid probes rely, many of which have already begun to broaden the scope of biological questions that can be addressed by imaging organelle membranes at the nanoscale.     

Determination of fluorescent probes localization in membranes by nonradiative energy transfer

One of the new methods of studying the structure and dimensions of biological membranes is based on the F?rster's nonradiative energy transfer between special molecules, the so-called 'membrane fluorescent probes'. Further development of the approach is presented in this article. It consists of the combined use of the time-resolved and steady-state fluorescence data with subsequent computer simulation of the energy transfer in membranes. Anthracene as an energy donor, and 4-p-(dimethylamino)styryl-N-dodecylpyridinium (DSP-12) or 4-dimethylaminochalcone (DMC) as energy acceptors were bound with artificial phospholipid membrane vesicles ('liposomes'). The synchrotron radiation was used as an impulse source for the excitation light. The steady-state fluorescence data permit the area of possible probe localization in membranes to be distinguished, while the kinetic data allow them to be narrowed significantly. There is a good agreement between the obtained localization and our present-day knowledge of lipid bilayer structure. The accuracy of the method is ca. several Angstr?ms.     

Temperature dependence of the fluorescence of pyrene labeled crab nerve membranes

Summary A method, using albumin-pyrene complexes, has been developed for labeling, in a controlled manner, crab leg nerves whose excitability was preserved.The excimer-to-monomer fluorescence intensity ratio of pyrene, embedded in nerve membrane lipids and in their crude lipid extracts, is a fluidity parameter which displayed the following features with temperatures. a—a temperature-dependent increase of fluidity b—three breaks (6°, 19° and 37°C) in the physiological medium c—In Ca ⁺⁺-depleted sea water, the 37° characteristic temperature vanished.These breaks may reflect some lateral phase separations of the lipid components of nerve membranes. The calcium dependent temperature break may involve a segregation of acidic phospholipids while the other two breaks (6° and 19°C) may be due to neutral lipids phase separation. The relationship of these findings to nerve function is discussed.     

Two-color fluorescent probes for imaging the dipole potential of cell plasma membranes

The dipole potential (Ψ_d) constitutes a large and functionally important part of the electrostatic potential of cell plasma membranes. However, its direct measurement is not possible. Herein, new 3-hydroxyflavone fluorescent probes were developed that respond strongly to Ψ_d changes by a variation of the intensity ratio of their two well-separated fluorescence bands. Using fluorescence spectroscopy with cell suspensions and confocal microscopy with adherent cells, we showed, for the first time, two-color fluorescence ratiometric measurement and visualization of Ψ_d in cell plasma membranes. Using this new tool, a heterogeneous distribution of this potential within the membrane was evidenced.