Ionic wave propagation along actin filaments

We investigate the conditions enabling actin filaments to act as electrical transmission lines for ion flows along their lengths. We propose a model in which each actin monomer is an electric element with a capacitive, inductive, and resistive property due to the molecular structure of the actin filament and viscosity of the solution. Based on Kirchhoff's laws taken in the continuum limit, a nonlinear partial differential equation is derived for the propagation of ionic waves. We solve this equation in two different regimes. In the first, the maximum propagation velocity wave is found in terms of Jacobi elliptic functions. In the general case, we analyze the equation in terms of Fisher-Kolmogoroff modes with both localized and extended wave characteristics. We propose a new signaling mechanism in the cell, especially in neurons.     

Identification process based on shear wave propagation within a phantom using finite element modelling and magnetic resonance elastography

Magnetic resonance elastography (MRE), based on shear wave propagation generated by a specific driver, is a non-invasive exam performed in clinical practice to improve the liver diagnosis. The purpose was to develop a finite element (FE) identification method for the mechanical characterisation of phantom mimicking soft tissues investigated with MRE technique. Thus, a 3D FE phantom model, composed of the realistic MRE liver boundary conditions, was developed to simulate the shear wave propagation with the software ABAQUS. The assumptions of homogeneity and elasticity were applied to the FE phantom model. Different ranges of mesh size, density and Poisson's ratio were tested in order to develop the most representative FE phantom model. The simulated wave displacement was visualised with a dynamic implicit analysis. Subsequently, an identification process was performed with a cost function and an optimisation loop provided the optimal elastic properties of the phantom. The present identification process was validated on a phantom model, and the perspective will be to apply this method on abdominal tissues for the set-up of new clinical MRE protocols that could be applied for the follow-up of the effects of treatments.     

Determination of viscoelastic moduli of arteries

A model for the arterial wall, motivated by wave propagation findings, is developed. The wall is taken to be a viscoelastic, orthotropic, prestressed shell which is materially characterized at any prestress level by ten incremental moduli. By using the momentum equations and the wave propagation characteristics for three axisymmetric modes, the ten moduli are found in terms of the three wave speeds, the three attenuation coefficients and the prestresses.     

Differential effects of pre-tension on shear wave propagation in elastic media with different boundary conditions as measured by magnetic resonance elastography and finite element modeling

Magnetic resonance elastography (MRE) can non-invasively determine material stiffness based on the propagating shear wavelength. Shear wave propagation in a finite homogenous isotropic material can be affected by multiple factors. In this study we examined the effects of pre-tension and frequency on MRE shear measurements of gel phantoms with different boundary conditions, frequencies, and geometries. Results from MRE measurements were compared to wave motion theory in elastic solids and qualitatively to a finite element (FE) model. Results indicated that boundary conditions, geometry and pre-tension are important factors to be considered when performing MRE tests on a finite material, and that FE modeling can help explore how the shear wave propagation is affected under various boundary conditions and axial stresses, among other potential factors.     

A finite element model for analyzing shear wave propagation observed in magnetic resonance elastography

Magnetic resonance elastography (MRE) is a novel non-invasive approach to determine material stiffness by using a conventional magnetic resonance imaging (MRI) system incorporated with an oscillating motion-sensitizing gradient to detect nodal displacements produced by a shear excitation wave. The effects of material properties, excitation frequency, boundary conditions, and applied tension on shear wavelength measurement must be examined before MRE can become a useful diagnostic tool. We propose finite element (FE) modeling as a robust method to systematically study the effects of these parameters. An axisymmetric FE model was generated with ABAQUS to simulate agarose gel phantoms. The effects of material stiffness, density, and excitation frequency on propagating shear wavelength were examined individually. The effect of the boundary conditions on shear wavelength was also demonstrated. Results of shear wavelength from MRE measurement were compared with the results of FE model, which showed good agreement between the methods.     

On Propagation of Excitation Waves in Moving Media: The FitzHugh-Nagumo Model

Background

Existence of flows and convection is an essential and integral feature of many excitable media with wave propagation modes, such as blood coagulation or bioreactors.

Methods/Results

Here, propagation of two-dimensional waves is studied in parabolic channel flow of excitable medium of the FitzHugh-Nagumo type. Even if the stream velocity is hundreds of times higher that the wave velocity in motionless medium (), steady propagation of an excitation wave is eventually established. At high stream velocities, the wave does not span the channel from wall to wall, forming isolated excited regions, which we called “restrictons”. They are especially easy to observe when the model parameters are close to critical ones, at which waves disappear in still medium. In the subcritical region of parameters, a sufficiently fast stream can result in the survival of excitation moving, as a rule, in the form of “restrictons”. For downstream excitation waves, the axial portion of the channel is the most important one in determining their behavior. For upstream waves, the most important region of the channel is the near-wall boundary layers. The roles of transversal diffusion, and of approximate similarity with respect to stream velocity are discussed.

Conclusions

These findings clarify mechanisms of wave propagation and survival in flow.     

Nonlinear elastic analysis of blood vessels

Based on the theory of Green and Adkins [9], a strain energy function is proposed to describe the nonlinear mechanical behavior of arteries. The arterial tissue is assumed to be a nonlinear elastic, incompressible material with local triclinicity and transverse isotropy. Although the arterial tissue shows viscous phenomena, experimental results have indicated that viscosity is only a second-order effect as compared to the nonlinear elasticity of the tissue. The advantage of the formulation presented herein is that it is relatively simple and results in an accurate stress-strain relation that can be used readily for the study of wave propagations in the blood vessels. For nonlinear finite strain elasticity of the order two, ten elastic constants are needed to describe the material nonlinearity of the arterial tissue. Based on the orthogonal, transverse isotropies and the incompressibility conditions, ten constraint equations may be established and the elastic constants can be uniquely determined by correlating with the experimental results. An example of calculating these elastic constants is made by using the experimental data of Patel, et al. [14-17] for the intercoastal arteries in living dogs. The predicted mechanical behavior of canine arteries is quite satisfactory as compared to the experimental data except when the longitudinal and the circumferential stretches exceed 1.60. However, such a strain magnitude may not be expected in in-vivo arteries because of the constraints of peripheral connecting tissues. Otherwise, the strain energy function including higher order strain terms should be used.(ABSTRACT TRUNCATED AT 250 WORDS)     

The speed of sound through trabecular bone predicted by Biot theory

Cancellous bone is a highly porous material filled with fluid. The mechanical properties of cancellous bone determine whether the bone is normal or osteoporotic. Wave propagation can be used to measure the elastic constants of cancellous bone. Recently, poroelasticity theory has been used to predict the elastic constants of cancellous bone from the wave velocities. In this study, it is shown that the fast wave, predicted by the Biot theory, corresponds to the wave penetrating the trabeculae, while the slow wave is determined by the interaction between the trabeculae and the fluid. The trabecular shape does not affect the wave velocity significantly when using the variable, which is determined by the microstructure, and the slow wave velocity decreases after the porosity reaches 80%.     

Finite element implementation of a new model of slight compressibility for transversely isotropic materials

Modelling transversely isotropic materials in finite strain problems is a complex task in biomechanics, and is usually addressed by using finite element (FE) simulations. The standard method developed to account for the quasi-incompressible nature of soft tissues is to decompose the strain energy function (SEF) into volumetric and deviatoric parts. However, this decomposition is only valid for fully incompressible materials, and its use for slightly compressible materials yields an unphysical response during the simulation of hydrostatic tension/compression of a transversely isotropic material. This paper presents the FE implementation as subroutines of a new volumetric model solving this deficiency in two FE codes: Abaqus and FEBio. This model also has the specificity of restoring the compatibility with small strain theory. The stress and elasticity tensors are first derived for a general SEF. This is followed by a successful convergence check using a particular SEF and a suite of single-element tests showing that this new model does not only correct the hydrostatic deficiency but may also affect stresses during shear tests (Poynting effect) and lateral stretches during uniaxial tests (Poisson's effect). These FE subroutines have numerous applications including the modelling of tendons, ligaments, heart tissue, etc. The biomechanics community should be aware of specificities of the standard model, and the new model should be used when accurate FE results are desired in the case of compressible materials.     

Wave Propagation through a Viscous Fluid Contained in a Tethered, Initially Stressed, Orthotropic Elastic Tube

To give a realistic representation of the pulse propagation in arteries a theoretical analysis of the wave propagation through a viscous incompressible fluid contained in an initially stressed elastic tube is considered. The tube is assumed to be orthotropic and its longitudinal motion is constrained by a uniformly distributed additional mass, a dashpot and a spring. The fluid is assumed to be Newtonian. The analysis is restricted to propagation of small amplitude harmonic waves whose wavelength is large compared to the radius of the vessel. Elimination of arbitrary constants from the general solutions of the equations of motion of the fluid and the wall gives a frequency equation to determine the velocity of propagation. Two roots of this equation give the velocity of propagation of two distinct outgoing waves. One of the waves propagates slower than the other. The propagation properties of s lower waves are very slightly affected by the degree of anisotropy of the wall. The velocity of propagation of faster waves decreases as the ratio of the longitudinal modulus of elasticity to the circumferential modulus decreases; transmission of these waves is very little affected. The influence of the tethering on the propagation velocity of slower waves is negligibly small; transmission of these waves is seriously affected. In tethered tubes faster waves are completely attenuated.     

Physical invariant strain energy function for passive myocardium

Principal axis formulations are regularly used in isotropic elasticity, but they are not often used in dealing with anisotropic problems. In this paper, based on a principal axis technique, we develop a physical invariant orthotropic constitutive equation for incompressible solids, where it contains only a one variable (general) function. The corresponding strain energy function depends on six invariants that have immediate physical interpretation. These invariants are useful in facilitating an experiment to obtain a specific constitutive equation for a particular type of materials. The explicit appearance of the classical ground-state constants in the constitutive equation simplifies the calculation for their admissible values. A specific constitutive model is proposed for passive myocardium, and the model fits reasonably well with existing simple shear and biaxial experimental data. It is also able to predict a set of data from a simple shear experiment.     

Near field effect on elasticity measurement for cartilage-bone structure using Lamb wave method

Background

Cartilage elasticity changes with cartilage degeneration. Hence, cartilage elasticity detection might be an alternative to traditional imaging methods for the early diagnosis of osteoarthritis. Based on the wave propagation measurement, Shear wave elastography (SWE) become an emerging non-invasive elasticity detection method. The wave propagation model, which is affected by tissue shapes, is crucial for elasticity estimating in SWE. However, wave propagation model for cartilage was unclear.

Methods

This study aimed to establish a wave propagation model for the cartilage-bone structure. We fabricated a cartilage-bone structure, and studied the elasticity measurement and wave propagation by experimental and numerical Lamb wave method (LWM).

Results

Results indicated the wave propagation model satisfied the lamb wave theory for two-layered structure. Moreover, a near field region, which affects wave speed measurements and whose occurrence can be prevented if the wave frequency is larger than one critical frequency, was observed.

Conclusion

Our findings would provide a theoretical foundation for further application of LWM in elasticity measurement of cartilage in vivo. It can help the application of LWM to the diagnosis of osteoarthritis.

     

Wave Propagation through a Newtonian Fluid Contained within a Thick-Walled,Viscoelastic Tube

The propagation of harmonic pressure waves through a Newtonian fluid contained within a thick-walled, viscoelastic tube is considered as a model of arterial blood flow. The fluid is assumed to be homogeneous and Newtonian, and its motion to be laminar and axisymmetric. The wall is assumed to be isotropic, incompressible, linear, and viscoelastic. It is also assumed that the motion is such that the convective acceleration is negligible. The motion of the fluid is described by the linearized form of the Navier-Stokes equations and the motion of the wall by classical elasticity theory. The frequency dependence of the wall mechanical properties are represented by a three parameter, relaxation-type model. Using boundary conditions describing the continuity of stress and velocity components in the fluid and the wall, explicit solutions for the system of equations of the model have been obtained. The longitudinal fluid impedance has been expressed in terms of frequency and the system parameters. The frequency equation has been solved and the propagation constant also expressed in terms of frequency and system parameters. The results indicate that the fluid impedance is smaller than predicted by the rigid tube model or by Womersley''s constrained elastic tube model. Also, the velocity of propagation is generally slower and the transmission per wavelength less than predicted by Womersley''s elastic tube model. The propagation constant is very sensitive to changes in the degree of wall viscoelasticity.     

A patient-specific finite element methodology to predict damage accumulation in vertebral bodies under axial compression, sagittal flexion and combined loads

Due to the inherent limitations of DXA, assessment of the biomechanical properties of vertebral bodies relies increasingly on CT-based finite element (FE) models, but these often use simplistic material behaviour and/or single loading cases. In this study, we applied a novel constitutive law for bone elasticity, plasticity and damage to FE models created from coarsened pQCT images of human vertebrae, and compared vertebral stiffness, strength and damage accumulation for axial compression, anterior flexion and a combination of these two cases. FE axial stiffness and strength correlated with experiments and were linearly related to flexion properties. In all loading modes, damage localised preferentially in the trabecular compartment. Damage for the combined loading was higher than cumulated damage produced by individual compression and flexion. In conclusion, this FE method predicts stiffness and strength of vertebral bodies from CT images with clinical resolution and provides insight into damage accumulation in various loading modes.     

Determination of elastomeric foam parameters for simulations of complex loading

BACKGROUND: Finite element (FE) analysis has shown promise for the evaluation of elastomeric foam personal protection devices. Although appropriate representation of foam materials is necessary in order to obtain realistic simulation results, material definitions used in the literature vary widely and often fail to account for the multi-mode loading experienced by these devices. This study aims to provide a library of elastomeric foam material parameters that can be used in FE simulations of complex loading scenarios. METHOD OF APPROACH: Twelve foam materials used in footwear were tested in uni-axial compression, simple shear and volumetric compression. For each material, parameters for a common compressible hyperelastic material model used in FE analysis were determined using: (a) compression; (b) compression and shear data; and (c) data from all three tests. RESULTS: Material parameters and Drucker stability limits for the best fits are provided with their associated errors. The material model was able to reproduce deformation modes for which data was provided during parameter determination but was unable to predict behavior in other deformation modes. CONCLUSIONS: Simulation results were found to be highly dependent on the extent of the test data used to determine the parameters in the material definition. This finding calls into question the many published results of simulations of complex loading that use foam material parameters obtained from a single mode of testing. The library of foam parameters developed here presents associated errors in three deformation modes that should provide for a more informed selection of material parameters.     

One-dimensional model for propagation of a pressure wave in a model of the human arterial network: comparison of theoretical and experimental results

Pulse wave evaluation is an effective method for arteriosclerosis screening. In a previous study, we verified that pulse waveforms change markedly due to arterial stiffness. However, a pulse wave consists of two components, the incident wave and multireflected waves. Clarification of the complicated propagation of these waves is necessary to gain an understanding of the nature of pulse waves in vivo. In this study, we built a one-dimensional theoretical model of a pressure wave propagating in a flexible tube. To evaluate the applicability of the model, we compared theoretical estimations with measured data obtained from basic tube models and a simple arterial model. We constructed different viscoelastic tube set-ups: two straight tubes; one tube connected to two tubes of different elasticity; a single bifurcation tube; and a simple arterial network with four bifurcations. Soft polyurethane tubes were used and the configuration was based on a realistic human arterial network. The tensile modulus of the material was similar to the elasticity of arteries. A pulsatile flow with ejection time 0.3 s was applied using a controlled pump. Inner pressure waves and flow velocity were then measured using a pressure sensor and an ultrasonic diagnostic system. We formulated a 1D model derived from the Navier-Stokes equations and a continuity equation to characterize pressure propagation in flexible tubes. The theoretical model includes nonlinearity and attenuation terms due to the tube wall, and flow viscosity derived from a steady Hagen-Poiseuille profile. Under the same configuration as for experiments, the governing equations were computed using the MacCormack scheme. The theoretical pressure waves for each case showed a good fit to the experimental waves. The square sum of residuals (difference between theoretical and experimental wave-forms) for each case was <10.0%. A possible explanation for the increase in the square sum of residuals is the approximation error for flow viscosity. However, the comparatively small values prove the validity of the approach and indicate the usefulness of the model for understanding pressure propagation in the human arterial network.     

Validation of density–elasticity relationships for finite element modeling of human pelvic bone by modal analysis

In total hip arthroplasty and particularly in revision surgery, computer assisted pre-operative prediction of the best possible anchorage strategy for implant fixation would be a great help to the surgeon. Computer simulation relies on validated numerical models. In the current study, three density–elasticity relationships (No. 1–3) from the literature for inhomogeneous material parameter assignment from CT data in automated finite element (FE) modeling of long bones were evaluated for their suitability for FE modeling of human pelvic bone. Numerical modal analysis was conducted on 10 FE models of hemipelvic bone specimens and compared to the gold standard provided by experimental modal analysis results from a previous in-vitro study on the same specimens. Overall, calculated resonance frequencies came out lower than measured values. Magnitude of mean relative deviation of numerical resonance frequencies with regard to measured values is lowest for the density–elasticity relationship No. 3 (−15.9%) and considerably higher for both density–elasticity relationships No. 1 (−41.1%) and No. 2 (−45.0%). Mean MAC values over all specimens amount to 77.8% (No. 1), 78.5% (No. 2), and 83.0% (No. 3). MAC results show, that mode shapes are only slightly influenced by material distribution. Calculated resonance frequencies are generally lower than measured values, which indicates, that numerical models lack stiffness. Even when using the best suited (No. 3) out of three investigated density–elasticity relationships, in FE modeling of pelvic bone a considerable underestimation of model stiffness has to be taken into account.     

Determination of elastomeric foam parameters for simulations of complex loading

Background: Finite element (FE) analysis has shown promise for the evaluation of elastomeric foam personal protection devices. Although appropriate representation of foam materials is necessary in order to obtain realistic simulation results, material definitions used in the literature vary widely and often fail to account for the multi-mode loading experienced by these devices. This study aims to provide a library of elastomeric foam material parameters that can be used in FE simulations of complex loading scenarios.

Method of Approach: Twelve foam materials used in footwear were tested in uni-axial compression, simple shear and volumetric compression. For each material, parameters for a common compressible hyperelastic material model used in FE analysis were determined using: (a) compression; (b) compression and shear data; and (c) data from all three tests.

Results: Material parameters and Drucker stability limits for the best fits are provided with their associated errors. The material model was able to reproduce deformation modes for which data was provided during parameter determination but was unable to predict behavior in other deformation modes.

Conclusions: Simulation results were found to be highly dependent on the extent of the test data used to determine the parameters in the material definition. This finding calls into question the many published results of simulations of complex loading that use foam material parameters obtained from a single mode of testing. The library of foam parameters developed here presents associated errors in three deformation modes that should provide for a more informed selection of material parameters.     

On the velocity of propagation of pressure waves in an incompressible viscous fluid enclosed in a tube with an elastomeric wall

Rashevsky's treatment of the flow of an incompressible viscous fluid in an elastic distensible tube is applied to the same problem, except that the wall of the tube is assumed to be elastomeric. As a result the velocity of propagation is obtained in terms of the elastomeric constants of the wall, the thickness and density of the wall, the viscosity of the fluid, and the radius of the tube.     

The influence of vessel wall elasticity and peripheral resistance on the carotid artery flow wave form: a CFD model compared to in vivo ultrasound measurements

The Doppler flow wave form and its derived measures such as the pulsatility index provide clinically important tools for the investigation of arterial disease. The typical shape of Doppler flow wave forms is physiologically known to be largely determined by both peripheral resistance and elastic properties of the arterial wall. In the present study we systematically investigate the influence of both vessel wall elasticity and peripheral resistance on the flow wave form obtained from a CFD-simulation of blood flow in the carotid bifurcation. Numerical results are compared to in vivo ultrasound measurements. The in vivo measurement provides a realistic geometry, local elasticities and an input flow wave form for the numerical experiment. Numerical and experimental results are compared at three different sites in the carotid branches. Peripheral resistance has a profoundly decreasing effect on velocities in the external carotid artery. If elasticity is taken into account, the computed peak systolic velocities are considerably lower and a more realistic smoothing of the flow wave form is found. Together, the results indicate that only if both vessel wall elasticity and positive peripheral resistance are taken into account, experimentally obtained Doppler flow wave forms can be reproduced numerically.