High Meiofaunal and Nematodes Diversity around Mesophotic Coral Oases in the Mediterranean Sea

Although the mesophotic zone of the Mediterranean Sea has been poorly investigated, there is an increasing awareness about its ecological importance for its biodiversity, as fish nursery and for the recruitment of shallow water species. Along with coastal rocky cliffs, isolated coralligenous concretions emerging from muddy bottoms are typical structures of the Mediterranean Sea mesophotic zone. Coralligenous concretions at mesophotic depths in the South Tyrrhenian Sea were investigated to assess the role of these coralligenous oases in relation to the biodiversity of surrounding soft sediments. We show here that the complex structures of the coralligenous concretions at ca. 110 m depth influence the trophic conditions, the biodiversity and assemblage composition in the surrounding sediments even at considerable distances. Coral concretions not only represent deep oases of coral biodiversity but they also promote a higher biodiversity of the fauna inhabiting the surrounding soft sediments. Using the biodiversity of nematodes as a proxy of the total benthic biodiversity, a high turnover biodiversity within a 200 m distance from the coralligenous concretions was observed. Such turnover is even more evident when only rare taxa are considered and seems related to specific trophic conditions, which are influenced by the presence of the coralligenous structures. The presence of a high topographic complexity and the trophic enrichment make these habitats highly biodiverse, nowadays endangered by human activities (such as exploitation of commercial species such as Corallium rubrum, or trawling fisheries, which directly causes habitat destruction or indirectly causes modification in the sedimentation and re-suspension rates). We stress that the protection of the coralligenous sea concretions is a priority for future conservation policies at the scale of large marine ecosystems and that a complete census of these mesophotic oases of biodiversity should be a priority for future investigations in the Mediterranean Sea.     

Projected impacts of climate warming on the functional and phylogenetic components of coastal Mediterranean fish biodiversity

Climate warming affects biodiversity distribution across all ecosystems. However, beyond changes in species richness, impacts on other biodiversity components are still overlooked, particularly in the marine realm. Here we forecasted the potential effect of climate warming on the phylogenetic and functional components of coastal Mediterranean fish biodiversity. To do so, we used species distribution models to project the potential distribution of 230 coastal fish species by the end of the 21st century based on the IPCC A2 scenario implemented with the Mediterranean climatic model NEMOMED8. From these projections, we assessed the changes in phylogenetic (PD) and functional diversity (FD) of fish assemblages at multiple spatial scales using a dated molecular phylogeny and an extensive functional trait database. At the scale of the entire Mediterranean Sea, the projected extinctions of 40 coastal fish species would lead to a concomitant erosion of PD and FD (13.6 and 3%, respectively). However, a null model revealed that species loss at this scale would not lead to a disproportionate erosion of PD and FD. Similar results were found when considering fish assemblages at the grid cell scale. Indeed, at this scale, the projected changes in species richness would lead to unexpected losses of PD and FD for localized and small areas only. A disproportionate erosion of PD under climate warming was only forecasted when analysing fish assemblages at an intermediate spatial scale, namely the Mediterranean marine ecoregions. Overall, our results emphasize the importance of considering multiple spatial scales when assessing potential impacts of climate warming on the multiple components marine biodiversity.     

Exploring the convergence of natural flows for the generation of natural capital stocks in marine ecosystems

Marine ecosystems are open, complex, adaptive, and hierarchical systems highly integrated through the exchange of matter and energy flows. This flows exchange allows marine ecosystems to operate at different scales acting as dissipative structures, building natural capital stocks capable of generating several ecosystem services vital for human well-being. Humans derive a wide range of goods and services from marine ecosystems while, at the same time, generate several impacts causing biodiversity loss and seriously affecting their capacity to provide benefits to humans. Effective management strategies are crucial to conserve healthy and diverse marine and coastal ecosystems, maintain the valuable functions and services they provide, and allow for sustainable human activities. In recent years, Marine Protected Areas (MPAs) have been increasingly acknowledged worldwide as important tools to conserve biodiversity and achieve human well-being and sustainable development goals. Assessing the value of natural capital and ecosystem services is crucial to raise awareness on their importance, support conservation strategies, and ensure the sustainable management of marine ecosystems. This study aimed at calculating biomass and emergy-based indicators to assess the value of natural capital stocks in a Mediterranean MPA. The assessment was performed through a biophysical and trophodynamic environmental accounting model fed with field biomass data collected through ad hoc sampling campaigns performed in the MPA. Four main macro-habitats were investigated: sciaphilic hard bottom (coralligenous bioconstructions), photophilic hard bottom, soft bottom, and Posidonia oceanica seagrass beds. The biomass density of the main autotrophic and heterotrophic taxonomic groups identified in the four macro-habitats of the MPA was evaluated. Based on this biomass matrix, the emergy value of natural capital stocks was assessed. The Posidonia oceanica seagrass beds habitat showed the highest biophysical value (2.32·10¹⁹ sej) at MPA scale, while coralligenous bioconstructions resulted the habitat with the highest biophysical value per unit area (2.72·10¹² sej m⁻²). In addition, to complement the biophysical assessment with an economic perspective, the emergy-based indicators were converted into monetary units. The total value of natural capital of the whole MPA resulted in about 46 M€. The results of this study can support local managers and policy makers in the development of management strategies to ensure nature conservation and sustainable human activities. They can be also used as a benchmark for the assessment of natural capital value at larger scales in support of a proper consideration and inclusion of nature value into processes of policy making.     

Assemblage-level responses of Neotropical bats to forest loss and fragmentation

Habitat loss and fragmentation are the most important causes of biological diversity loss, changing the properties of the remaining environment. The Neotropical Region is one of the most affected areas due to the conversion of natural habitats into agricultural activities and deforestation. In this region, bats represent almost 50% of all mammal species, reaching the highest taxonomic and functional diversity. Bats are valuable indicators of biodiversity and ecosystem health, but their response to habitat loss and fragmentation was poorly studied in Argentina. The aim of this study was to analyze the response of bat assemblages to habitat alteration in Northwestern Argentina. The specimens were collected in eight different localities, four well-preserved and four disturbed sites of the Yungas Forests. To describe the structure of bat assemblages, rank-abundance curves, species richness and Shannon (H’) and Simpson (D’) diversity indexes were calculated. To test the assemblage variations among sites, PCA and NPMANOVA analysis were performed. After 96 sampling nights, a total of 565 bats from 23 species were captured. A great variation in the assemblage structure was registered, regardless the disturbance level of the sites. These variations were not significantly different according to statistical analysis. The results support the hypothesis that areas with moderate fragmentation can sustain a high diversity of bat species. Moreover, these results showed that consistent responses to landscape composition at the assemblage level are harder to identify in fragmented Neotropical Forests. The responses of bats to habitat alteration tend to be highly species-specific.     

A preliminary investigation of temporal patterns in semiarid ant communities: Variation with habitat type

Abstract This study reports on preliminary findings of habitat‐contingent temporal variability in ant assemblages in Purnululu National Park in northern Australia's semiarid tropics, by sampling at the end of the dry season (October 2004) and the end of the wet season (April 2005). Six grids of 15 pitfall traps were established in each of the spinifex, sandplain and gorge habitats. Community composition was dominated by behaviourally dominant ants (Iridomyrmex spp.) and climate specialists (Melophorus and Meranoplus spp.). Ant activity was higher in the wet season sampling period, with greater species richness and abundance. Interestingly, temporal variation in ant assemblage richness, abundance and composition varied markedly with habitat type. While there were large differences between sampling periods for the spinifex and sandplain habitat, this was not the case in the gorges. These temporal changes in ant assemblages are postulated to be linked with major environmental differences between the two sampling periods, driven by seasonal climatic conditions. It is likely that these changes influenced the ant assemblages through species differences in physiological tolerance levels, ecological requirements and competitive ability. This study demonstrates the need, in highly seasonal environments, to consider the temporal context of studies in relation to habitat type, particularly when undertaking biodiversity surveys and monitoring.     

How many replicates to accurately estimate fish biodiversity using environmental DNA on coral reefs?

Quantifying fish species diversity in rich tropical marine environments remains challenging. Environmental DNA (eDNA) metabarcoding is a promising tool to face this challenge through the filtering, amplification, and sequencing of DNA traces from water samples. However, because eDNA concentration is low in marine environments, the reliability of eDNA to detect species diversity can be limited. Using an eDNA metabarcoding approach to identify fish Molecular Taxonomic Units (MOTUs) with a single 12S marker, we aimed to assess how the number of sampling replicates and filtered water volume affect biodiversity estimates. We used a paired sampling design of 30 L per replicate on 68 reef transects from 8 sites in 3 tropical regions. We quantified local and regional sampling variability by comparing MOTU richness, compositional turnover, and compositional nestedness. We found strong turnover of MOTUs between replicated pairs of samples undertaken in the same location, time, and conditions. Paired samples contained non‐overlapping assemblages rather than subsets of one another. As a result, non‐saturated localized diversity accumulation curves suggest that even 6 replicates (180 L) in the same location can underestimate local diversity (for an area <1 km). However, sampling regional diversity using ~25 replicates in variable locations (often covering 10 s of km) often saturated biodiversity accumulation curves. Our results demonstrate variability of diversity estimates possibly arising from heterogeneous distribution of eDNA in seawater, highly skewed frequencies of eDNA traces per MOTU, in addition to variability in eDNA processing. This high compositional variability has consequences for using eDNA to monitor temporal and spatial biodiversity changes in local assemblages. Avoiding false‐negative detections in future biomonitoring efforts requires increasing replicates or sampled water volume to better inform management of marine biodiversity using eDNA.     

Putting bryophyte communities in the map: A case study on prioritizing monitoring of human pressure in riverscapes

Freshwater ecosystems support biological communities with high species richness and conservation interest. However, these ecosystems are highly altered by human intervention and threatened worldwide, making them a priority in conservation planning and biodiversity monitoring. Bryophytes, including several conservation-interest taxa, are recognized indicators of ecological status in freshwaters. We aimed to develop a framework for designing monitoring networks to detect trends in aquatic and semi-aquatic bryophyte communities, prioritizing high-conservation interest communities in different contexts of human pressure (specifically, resulting from the intersection of two criteria: (i) protection status and (ii) presence of a potential impact area).The framework consists of three steps: (1) Spatial modelling of biodiversity; (2) Spatial conservation prioritization; and (3) Model-assisted monitoring network design. Community-level modelling was used to model the distribution of the main bryophyte assemblages in the study area. A conservation prioritization software was utilized to identify areas with high conservation value. The monitoring network was designed using stratified random sampling and unequal-probability sampling techniques to target high conservation value sites distributed across different contexts of human pressure.We have identified four distinct community types, each characterized both by a small group of common and dominant species, and by small group of rarer, conservation-interest species. This typification of four species assemblages occurring in the study area, also highlighted those with potentially higher conservation-interest. The most valuable areas for the conservation of aquatic and semi-aquatic bryophyte communities coincide with specific environmental zones: mountainous areas in Lusitania, large watercourses in the Mediterranean North and some locations in the Mediterranean Mountains. Finally, we obtained a potential monitoring network consisting of 64 monitoring points, unequally distributed across different contexts of human pressure, privileging locations with higher conservation value.The framework presented here illustrates the potential of combining biodiversity modelling, spatial conservation prioritization and monitoring design in the development of monitoring networks. Namely, this framework allowed us to counter data deficiencies, to identify high priority areas to monitor and to design a monitoring network considering different scenarios of human pressure at a regional scale.This framework can also be valuable for conservation efforts as an approach to monitoring conservation-interest biodiversity features in anthropogenically modified riverscapes, which present different degrees of human pressure and the cumulative effects of these different impact elements. Moreover, this approach allows for the comprehensive monitoring of biodiversity values important for management at the national and regional levels. In addition, this framework is one of the first efforts in the development of monitoring networks that target aquatic and semi-aquatic bryophyte communities, a long-neglected plant group of high ecological and conservation importance in freshwater ecosystems.     

Taxonomic distinctness and species richness as measures of functional structure in bird assemblages

Most traditional "biodiversity" indices have an uncertain ecological interpretation, unfavourable sampling properties, and excessive data requirements. A new index of taxonomic distinctness (the average evolutionary distance between species in an assemblage) has many advantages over traditional measures, but its ecological interpretation remains unclear. We used published behavioural species data in conjunction with bird atlas data to quantify simple functional metrics (the fraction of species engaged in non-competitive interactions, and the average between-species disparity in habitat preferences) for breeding-bird assemblages in Europe and North America. We then analysed correlations of functional metrics with taxonomic distinctness and species richness, respectively. All functional metrics had weak, positive correlations with species richness. In contrast, correlations between functional metrics and taxonomic distinctness ranged from slightly negative to strongly positive, depending on the relative habitat heterogeneity, and on the resource involved in the between-species interaction. Strong positive correlations between taxonomic distinctness and the fraction of interactive species occurred for resources with few producer species per consumer species, and we suggest that taxonomic distinctness is consistently correlated with conservation worth. With its favourable sampling properties and data requirements, this taxonomic distinctness measure is a promising tool for biodiversity research and for environmental monitoring and management.     

Predator Assemblage Structure and Temporal Variability of Species Richness and Abundance in Forests of High Tree Diversity

Predators significantly affect ecosystem functions, but our understanding of to what extent findings can be transferred from experiments and low‐diversity systems to highly diverse, natural ecosystems is limited. With a particular threat of biodiversity loss at higher trophic levels, however, knowledge of spatial and temporal patterns in predator assemblages and their interrelations with lower trophic levels is essential for assessing effects of trophic interactions and advancing biodiversity conservation in these ecosystems. We analyzed spatial and temporal variability of spider assemblages in tree species‐rich subtropical forests in China, across 27 study plots varying in woody plant diversity and stand age. Despite effects of woody plant richness on spider assemblage structure, neither habitat specificity nor temporal variability of spider richness and abundance were influenced. Rather, variability increased with forest age, probably related to successional changes in spider assemblages. Our results indicate that woody plant richness and theory predicting increasing predator diversity with increasing plant diversity do not necessarily play a major role for spatial and temporal dynamics of predator assemblages in such plant species‐rich forests. Diversity effects on biotic or abiotic habitat conditions might be less pronounced across our gradient from medium to high plant diversity than in previously studied less diverse systems, and bottom‐up effects might level out at high plant diversity. Instead, our study highlights the importance of overall (diversity‐independent) environmental heterogeneity in shaping spider assemblages and, as indicated by a high species turnover between plots, as a crucial factor for biodiversity conservation at a regional scale in these subtropical forests.     

Objective selection of surrogate families to describe reef fish assemblages in a subtropical marine park

Effective representation of biodiversity in a marine park can be limited by lack of sampling at a suitable scale due to various methodological, logistical and taxonomic constraints. Surrogates that describe key components of biodiversity can benefit management planning and assist evaluation of zoning arrangements by improving efficiency and effectiveness of sampling. Reef fish are considered an important component of biodiversity in the Solitary Islands Marine Park (SIMP), New South Wales, Australia. Fish assemblages were surveyed using 30-min timed counts at 68 sites spread across the extent of shallow reef in the SIMP. The overall assemblage was compared with various subsets of taxa using the RELATE procedure in PRIMER to determine useful surrogates. Two families, Labridae and Pomacentridae, showed a high concordance with overall patterns and the highest correlation in estimating species richness by site. These families were the two most speciose (43, 32 species, respectively) comprising 30% of the species richness out of 66 families and 254 species. Surveying a subset of species that includes these two families has utility for marine park management in the SIMP, including evaluating the influence of ‘no take’ zones on assemblage patterns and systematic planning for biodiversity representation.     

Response diversity in Mediterranean coralligenous assemblages facing climate change: Insights from a multispecific thermotolerance experiment

Climate change threatens coastal benthic communities on a global scale. However, the potential effects of ongoing warming on mesophotic temperate reefs at the community level remain poorly understood. Investigating how different members of these communities will respond to the future expected environmental conditions is, therefore, key to anticipating their future trajectories and developing specific management and conservation strategies. Here, we examined the responses of some of the main components of the highly diverse Mediterranean coralligenous assemblages to thermal stress. We performed thermotolerance experiments with different temperature treatments (from 26 to 29°C) with 10 species from different phyla (three anthozoans, six sponges and one ascidian) and different structural roles. Overall, we observed species‐specific contrasting responses to warming regardless of phyla or growth form. Moreover, the responses ranged from highly resistant species to sensitive species and were mostly in agreement with previous field observations from mass mortality events (MMEs) linked to Mediterranean marine heat waves. Our results unravel the diversity of responses to warming in coralligenous outcrops and suggest the presence of potential winners and losers in the face of climate change. Finally, this study highlights the importance of accounting for species‐specific vulnerabilities and response diversity when forecasting the future trajectories of temperate benthic communities in a warming ocean.     

Do changes in seaweed biodiversity influence associated invertebrate epifauna?

Most investigations of biogenic habitat provision consider the promotion of local biodiversity by single species, yet habitat-forming species are often themselves components of diverse assemblages. Increased prevalence of anthropogenic changes to assemblages of habitat-forming species prompts questions about the importance of facilitator biodiversity to associated organisms. We used observational and short-term (30 days) manipulative studies of an intertidal seaweed system to test for the implications of changes in four components of biodiversity (seaweed species richness, functional group richness, species composition, and functional group composition) on associated small mobile invertebrate epifauna. We found that invertebrate epifauna richness and abundance were not influenced by changes in seaweed biodiversity. Invertebrate assemblage structure was in most cases not influenced by changes in seaweed biodiversity; only when algal assemblages were composed of monocultures of species with ‘foliose’ morphologies did we observe a difference in invertebrate assemblage structure. Correlations between algal functional composition and invertebrate assemblage structure were observed, but there was no correlation between algal species composition and invertebrate assemblage structure. These results suggest that changes in seaweed biodiversity are likely to have implications for invertebrate epifauna only under specific scenarios of algal change.     

Functional redundancy patterns reveal non-random assembly rules in a species-rich marine assemblage

The relationship between species and the functional diversity of assemblages is fundamental in ecology because it contains key information on functional redundancy, and functionally redundant ecosystems are thought to be more resilient, resistant and stable. However, this relationship is poorly understood and undocumented for species-rich coastal marine ecosystems. Here, we used underwater visual censuses to examine the patterns of functional redundancy for one of the most diverse vertebrate assemblages, the coral reef fishes of New Caledonia, South Pacific. First, we found that the relationship between functional and species diversity displayed a non-asymptotic power-shaped curve, implying that rare functions and species mainly occur in highly diverse assemblages. Second, we showed that the distribution of species amongst possible functions was significantly different from a random distribution up to a threshold of ～90 species/transect. Redundancy patterns for each function further revealed that some functions displayed fast rates of increase in redundancy at low species diversity, whereas others were only becoming redundant past a certain threshold. This suggested non-random assembly rules and the existence of some primordial functions that would need to be fulfilled in priority so that coral reef fish assemblages can gain a basic ecological structure. Last, we found little effect of habitat on the shape of the functional-species diversity relationship and on the redundancy of functions, although habitat is known to largely determine assemblage characteristics such as species composition, biomass, and abundance. Our study shows that low functional redundancy is characteristic of this highly diverse fish assemblage, and, therefore, that even species-rich ecosystems such as coral reefs may be vulnerable to the removal of a few keystone species.     

Low functional richness and redundancy of a predator assemblage in native forest fragments of Chiloe island, Chile

1. Changes in land use and habitat fragmentation are major drivers of global change, and studying their effects on biodiversity constitutes a major research programme. However, biodiversity is a multifaceted concept, with a functional component linking species richness to ecosystem function. Currently, the interaction between functional and taxonomic components of biodiversity under realistic scenarios of habitat degradation is poorly understood. 2. The expected functional richness (FR)-species richness relationship (FRSR) is positive, and attenuated for functional redundancy in species-rich assemblages. Further, environmental filters are expected to flatten that association by sorting species with similar traits. Thus, analysing FRSR can inform about the response of biodiversity to environmental gradients and habitat fragmentation, and its expected functional consequences. 3. Top predators affect ecosystem functioning through prey consumption and are particularly vulnerable to changes in land use and habitat fragmentation, being good indicators of ecosystem health and suitable models for assessing the effects of habitat fragmentation on their FR. 4. Thus, this study analyses the functional redundancy of a vertebrate predator assemblage at temperate forest fragments in a rural landscape of Chiloe island (Chile), testing the existence of environmental filters by contrasting an empirically derived FRSR against those predicted from null models, and testing the association between biodiversity components and the structure of forest fragments. 5. Overall, contrasts against null models indicate that regional factors determine low levels of FR and redundancy for the vertebrate predator assemblage studied, while recorded linear FRSR indicates proportional responses of the two biodiversity components to the structure of forest fragments. Further, most species were positively associated with either fragment size or shape complexity, which are highly correlated. This, and the absence of ecological filters at the single-fragment scale, rendered taxonomically and functionally richer predator assemblages at large complex-shaped fragments. 6. These results predict strong effects of deforestation on both components of biodiversity, potentially affecting the functioning of remnants of native temperate forest ecosystems. Thus, the present study assesses general responses of functional and taxonomic components of biodiversity to a specific human-driven process.     

Coralligenous “atolls”: Discovery of a new morphotype in the Western Mediterranean Sea

Coralligenous habitat and rhodoliths beds are very important in terms of biodiversity in the Mediterranean Sea. During an oceanographic campaign, carried out in northern Cap Corse, new coralligenous structures have been discovered. These structures, never previously identified in the Mediterranean Sea, are named “coralligenous atolls” because of their circular shape. The origin and growth dynamics of these atolls are still unknown but their form does not appear to result from hydrodynamic action and an anthropogenic origin also seems unlikely. However, this kind of shape seems rather closer to that of other circular structures (e.g. pockmarks) the origin of which is related to gaseous emissions. Further studies are needed to confirm this hypothesis through chemical analysis.     

Effects of long-term management practices on grassland plant assemblages in Mediterranean cork oak silvo-pastoral systems

The assessment of the effects of long-term management practices is relevant in understanding the current patterns of plant assemblages in semi-natural ecosystems. We hypothesized that the variety of management practices across different farming systems under the same ecological conditions directly and indirectly shapes these patterns via the long-term changes induced in soil features. The aims of this paper were to evaluate the influence of two sets of variables describing long-term management practices and soil features on plant assemblages and their importance in the context of Mediterranean silvo-pastoral systems. The analysis of variance revealed that richness and grazing value were not affected at all by grazing livestock species and soil tillage frequency and that they both showed relatively high absolute values for the specific context under study. Trifolium subterraneum was a key species in contributing to grassland grazing value and habitat biodiversity. The Canonical Correspondence Analysis highlighted the influence of management practices and soil features on plant assemblage composition, which was significantly affected by grazing livestock species and stocking rate and by soil pH and K content. The Redundancy Analysis showed that soil pH and related features were in turn affected by stocking rate, supporting our hypothesis that management practices influenced plant assemblage composition directly and indirectly via their long-term effects on soil features. The results also highlighted that a systemic analytical perspective applied at a grazing system scale can be effective in addressing sustainable grassland management issues in Mediterranean silvo-pastoral systems.