Phylogenetic and functional diversity of Bacteria and Archaea in a unique stratified lagoon, the Clipperton atoll (N Pacific)

The Clipperton lagoon in the North Pacific Ocean has been isolated from the surrounding sea for c. 160 years. It has a stratified water column that comprises an oxic and brackish upper water layer (mixolimnion) and a deep sulfuric anoxic saline layer (monimolimnion), separated by a steep pycnocline. Here, we test whether the Clipperton lagoon with its distinctive physico-chemical features, geographic isolation, recent water column stratification, and large nutrient input harbors original microbial communities. The combination of capillary electrophoresis single-strand polymorphism (CE-SSCP) fingerprinting and sequencing of cloned bacterial and archaeal 16S rRNA genes, and functional genes for methanogenesis (mcrA), methanotrophy (pmoA), and sulfate reduction (dsrAB), revealed that microbial communities and pathways were highly stratified down the water column. The mixolimnion contained ubiquitous freshwater clades of Alpha- and Betaproteobacteria, while the pycnocline contained mostly green sulfur bacteria (phylum Chlorobi). Sequences of the upper layers were closely related to sequences found in other aquatic ecosystems, suggesting that they have a strong potential for dispersal and colonization. In contrast, the monimolimnion contained new deeply branching bacterial divisions within the OP11 cluster and the Bacteroidetes, and was the most diverse of the layers. The unique environmental conditions characterizing the deep layers of the lagoon may explain the novelty of the microbial communities found at the Clipperton atoll.     

Clipperton, a possible future for atoll lagoons

Closure of the Clipperton Island atoll (10°17′ N 109°13′ W), now a meromictic lake, is estimated to have occurred between 1839 and 1849. It was still closed in 2005. Brackish waters in the upper layer (0–10 m) were oxygenated, while saline waters in the deep layer (>20 m) were anoxic. Allowing for the methodological difficulties of earlier measurements, the physical characteristics of the lagoon did not seem to have changed significantly since the last expedition (1980). The intermediate layer between brackish and saline waters was characterized by a strong density gradient and a temperature inversion of up to 1.6°C. Microbial activity, water exchange between the deep layer and surrounding oceanic waters and the geothermal flux hypothesis are discussed. The low DIN and SRP concentrations observed in the upper layer, despite high nutrient input by seabird droppings, reflect the high nutrient uptake by primary producers as attested by the elevated overall gross primary production (6.6 g C m⁻² day⁻¹), and high suspended photosynthetic biomass (2.23 ± 0.23 μg Chl a l⁻¹) and production (263 ± 27 μg C l⁻¹ day⁻¹). Phytoplankton composition changed in 67 years with the advent of new taxa and the disappearance of previously recorded species. The freshwater phytoplanktonic community comprised 43 taxa: 37 newly identified during the expedition and 6 previously noted; 16 species previously found were not seen in 2005. The closure of the lagoon, combined with the positive precipitation–evaporation budget characteristic of the region, has induced drastic changes in lagoon functioning compared with other closed atolls.     

Clipperton Atoll (eastern Pacific): oceanography,geomorphology, reef-building coral ecology and biogeography

Coral reef geomorphology and community composition were investigated in the tropical northeastern Pacific during April 1994. Three areas were surveyed in the Revillagigedo Islands (Mexico), and an intensive study was conducted on Clipperton Atoll (1,300 km SW of Acapulco), including macro-scale surface circulation, sea surface temperature (SST) climatology, geomorphology, coral community structure, zonation, and biogeography. Satellite-tracked drifter buoys from 1979–1993 demonstrated complex patterns of surface circulation with dominantly easterly flow (North Equatorial Counter Current, NECC), but also westerly currents (South Equatorial Current, SEC) that could transport propagules to Clipperton from both central and eastern Pacific regions. The northernmost latitude reached by the NECC is not influenced by El Niño-Southern Oscillation (ENSO) events, but easterly flow velocity evidently is accelerated at such times. Maximum NECC flow rates indicate that the eastern Pacific barrier can be bridged in 60 to 120 days. SST anomalies at Clipperton occur during ENSO events and were greater at Clipperton in 1987 than during 1982–1983. Shallow (15–18 m)and deep (50–58 m) terraces are present around most of Clipperton, probably representing Modern and late Pleistocene sea level stands. Although Clipperton is a well developed atoll with high coral cover, the reef-building fauna is depauperate, consisting of only 7 species of scleractinian corals belonging to the generaPocillopora, Porites, Pavona andLeptoseris, and 1 species of hydrocoral in the genusMillepora. The identities of the one Pocilpopora species and one of the twoPorites species are still unknown. Two of the remaining scleractinians (Pavona minuta, Leptoseris scabra) and the hydrocoral (Millepora exaesa), all formerly known from central and western Pacific localities, represent new eastern Pacific records. Scleractinian corals predominate (10–100% cover) over insular shelf depths of 8 to 60m, and crustose coralline algae are dominant (5–40% cover) from 0.5 to 7m. Spur and groove features, constructed of alternating frameworks ofPocillopora andPorites, and veneered with crustose coralline algae, are generally well developed around most atoll exposures. Although crustose coralline algae predominate in the breaker zone (with up to 100% cover), a prominent algal ridge is absent with only a slight buildup (ca. 10 cm) to seaward. Frequent grazing by the pufferfishArothron meleagris results in the removal of large amounts of live tissue and skeleton fromPorites lobata. Acanthaster planci is present, but rare. The grazing of large diadematid sea urchins, (2 species each ofDiadema andEchinothrix) on dead corals cause extensive erosion in some areas. Large numbers of corals on the 15–18 m terrace had recently suffered partial (P. lobata, 60–70% maximum of all colonies sampled) or total (Pocillopora sp., 80% maximum) mortality. The lengths of regenerating knobs and the rates of linear skeletal growth inP. lobata, determined by sclerochronologic analysis, indicated a period of stress during 1987. Massive skeletal growth is significantly higher at intermediate (16–17 m) than shallow (6–8 m) depths with mean extension rates of 1.5 mm yr^–1 inP. lobata and 1.4 mm yr^–1 inP. minuta at intermediate depths. Skeletal growth inP. lobata was depressed during the 1987 El Nifio event at Clipperton. The branching coralPocillopora sp. demonstrated high and similar skeletal growth rates at both shallow (25.4 mm yr^–1) and intermediate (26.5 mm yr^–1) depths. The presence of widely distributed Indo-Pacific zooxanthellate corals at Clipperton and the Revillagigedo Islands indicates that these NE Pacific Islands probably serve as a stepping stone for dispersal into the far eastern Pacific region.     

Spatial and temporal patterns in the coral assemblage at Clipperton Atoll: a sentinel reef in the Eastern Tropical Pacific

Coral Reefs - Isolated coral reef habitats are unique systems to study the natural dynamics of coral traits and their natural acclimatization, adaptation, and recovery from global-scale stressors...     

In situ and remotely sensed temperature comparisons on a Central Pacific atoll

Coral Reefs - Climate-induced warming events increasingly threaten coral reefs, heightening the need for accurate quantification of baseline temperatures and thermal stress in these ecosystems. To...     

Multiple distant origins for green sea turtles aggregating off Gorgona Island in the Colombian eastern Pacific

Mitochondrial DNA analyses have been useful for resolving maternal lineages and migratory behavior to foraging grounds (FG) in sea turtles. However, little is known about source rookeries and haplotype composition of foraging green turtle aggregations in the southeastern Pacific. We used mitochondrial DNA control region sequences to identify the haplotype composition of 55 green turtles, Chelonia mydas, captured in foraging grounds of Gorgona National Park in the Colombian Pacific. Amplified fragments of the control region (457 bp) revealed the presence of seven haplotypes, with haplotype (h) and nucleotide (π) diversities of h = 0.300±0.080 and π = 0.009±0.005 respectively. The most common haplotype was CMP4 observed in 83% of individuals, followed by CMP22 (5%). The genetic composition of the Gorgona foraging population primarily comprised haplotypes that have been found at eastern Pacific rookeries including Mexico and the Galapagos, as well as haplotypes of unknown stock origin that likely originated from more distant western Pacific rookeries. Mixed stock analysis suggests that the Gorgona FG population is comprised mostly of animals from the Galapagos rookery (80%). Lagrangian drifter data showed that movement of turtles along the eastern Pacific coast and eastward from distant western and central Pacific sites was possible through passive drift. Our results highlight the importance of this protected area for conservation management of green turtles recruited from distant sites along the eastern Pacific Ocean.     

Geomorphology of the uplifted Pleistocene atoll at Henderson Island, Pitcairn Group

Henderson Island, in the Pitcairn Group, preserves a Pleistocene atoll physiography with the rim of the raised reef structure, supporting spur and groove topography, enclosing a central lagoon. Excellent preservation of coral reef communities occurs along the ancient atoll rim and within the central lagoon. The previously interpreted depositional nature of the fossil atoll structure is herein corroborated with geomorphologic and stratigraphic evidence from previously un-visited portions of the island. Stratigraphic and lateral facies relationships indicate a physiographic zonation which includes spur and grooves, outer reef flat, lagoon margin, and an interior lagoon with patch reefs. The in situ occurrence and zonation of reef coral communities around the periphery and within the interior of the island appear to reflect the original physiography of the atoll lagoon, with the most pronounced reef development on the SE side of the original atoll. Stratigraphic units which comprise the raised atoll lagoon structure represent different time intervals, so the atoll lagoon structure formed during various sea level fluctuations. The modern atolls of the Pitcairn Group, Oeno and Ducie, provide some comparisons (similarities and differences) with the fossil lagoon on top of Henderson Island.     

Indo-Pacific echinoids in the tropical eastern Pacific

The existing literature reports that only one species of Indo-Pacific echinoid (Echinometra oblonga), occurs in the eastern Pacific. In this study we confirm the presence of this species at Islas Revillagigedo and also report the presence of two species ofEchinothrix (a genus hitherto unknown outside the Indo-Pacific) at Isla del Coco and at Clipperton Island. We also present evidence from isozymes and from mitochondrial DNA sequences indicating that at least one individual ofDiadema at Clipperton may belong to a maternal lineage characteristic of the west Pacific speciesD. savignyi. These data are consistent with the hypothesis that the observed populations of Indo-Pacific echinoid species are recent arrivals to the eastern Pacific, as opposed to the view that they are relicts of Tethyan pan-tropical distributions.Echinothrix diadema, in particular, may have arrived at Isla del Coco during the 1982-1983 El Nifio. In addition to Indo-Pacific species, Clipperton, Isla del Coco and the Revillagigedos contain a complement of eastern Pacific echinoids. The echinoid faunas of these islands should, therefore, be regarded as mixtures of two biogeographic provinces. Though none of the Indo-Pacific species are known to have reached the coast of the American mainland, their presence at the offshore islands of the eastern Pacific suggests that, for some echinoids, the East Pacific Barrier is not as formidable an obstacle to migration as was previously thought.     

Lionfish in the eastern Pacific: a cellular automaton approach to assessing invasion risk

The lionfish invasion in the Atlantic and Caribbean has proceeded with vigor since their introduction in the 1980s or early 1990s. Lionfish affect recruitment of juvenile fish to reefs due to predation and are found in densities far surpassing that of their native Indo-Pacific. There is concern that the lionfish may become introduced and proliferate (through aquarium releases, transport on floating debris, or passage through the Panama Canal in ship ballast water) in the eastern tropical and north Pacific. This study presents the first known prediction of the potential for establishment of lionfish in the eastern Pacific Ocean. Through computational modeling, we compare and contrast the dynamics of random hypothetical introductions of lionfish into the eastern Pacific and Atlantic Oceans in order to highlight the different potentials for invasion in both basins. Connectivity between discrete regions (precincts) in both the Atlantic and eastern Pacific are examined and settlement densities are calculated to indicate possible locations of establishment of breeding lionfish populations. Our results suggest that lionfish, which are successful invaders in the Atlantic, may not be as successful in the eastern Pacific due to weak mesoscale connectivity which reduces the rapid spread of lionfish larvae.     

Population decline but increased distribution of an invasive ant genotype on a Pacific atoll

Populations of invasive species are often studied when their effects are perceived as a problem. Yet observing the dynamics of populations over longer time periods can highlight changes in effects on invaded communities, and assist with management decisions. In this study we revisit an invasion of the yellow crazy ant (Anoplolepis gracilipes) in the Tokelau archipelago to determine if the distribution and abundance of the ant has changed ~7 years after surveys completed in 2004. We were particularly interested in whether populations of a previously identified invasive haplotype (D) had increased in distribution and abundance, as this haplotype was implicated in negative effects on resident ant communities. Indeed, haplotype D populations have become more widespread since the initial survey, more likely owing to new introductions or movement by humans, rather than intrinsic characteristics of the haplotype. We also found that despite no significant change in the abundance of A. gracilipes overall, haplotype D populations have declined in abundance. Residents of the Tokelau atolls no longer consider the ant to be a pest as they did 7 years ago, when populations of this ant interfered with their food production and many other aspects of daily life. We observed no significant differences between A. gracilipes invaded and uninvaded communities, which suggests that the ant is at a level of abundance below which significant negative ecological effects may occur. Population declines of invasive species are not infrequent, and understanding these population dynamics, particularly the underlying mechanisms promoting population declines or stabilisation, should be a high priority for invasion ecology.     

Wetlands of the Pacific Island region

The wetlands of 21 countries and territories of the Pacific Islands region are reviewed: American Samoa, Cook Islands, Federated States of Micronesia, Fiji, French Polynesia, Guam, Kiribati, Marshall Islands, Nauru, New Caledonia, Niue, Northern Mariana Islands, Palau, Papua New Guinea, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, Vanuatu, and Wallis and Futuna. The regions’ wetlands are classified into seven systems: coral reefs, seagrass beds, mangrove swamps, riverine, lacustrine, freshwater swamp forests and marshes. The diversity of species in each of these groups is at near global maxima at the west of the region, with decline towards the east with increasing isolation, and decreasing island size and age. The community structure is unique in each country, and many have endemic species with the habitat isolation that epitomises this island region. There remain, however, some serious gaps in basic inventory, particularly in freshwater biodiversity. Threats to wetlands include introduced freshwater species, loss of wetlands adjacent to urban growth, downstream effects of mining and land clearance, and over-use of mangrove, seagrass and coral reef resources by predominant subsistence economies that remain in this region. Only five countries are signatories to the Ramsar convention on wetlands, and this only recently with seven sites. Wetland managers have identified the need for community education, baseline surveys and monitoring, better legislation and policy for wetland management, and improved capacity of local communities to allow the wise use of their wetlands.     

Orbiniidae polychaetes (Polychaeta: Scolecida) from Coiba Island, eastern Pacific of Panama, with description of a new species

Santa Cruz and El Gambute, two mangrove systems with associated tidal flats, were sampled in Coiba National Park, Coiba Island, Pacific of Panama. At each site, two samplings were done at low, middle and high intertidal levels in February and November of 1997. A new orbiniid species were found: Orbinia oligopapillata n. sp. is characterized by having 15-16 thoracic chaetigers with four or five rows of uncini and up to three papilliform postchaetal processes on neuropodial lobes by the abdominal parapodia bearing flail-tipped neurochaetae, and by the presence on anterior-most abdominal chaetigers of interramal cirri and a low number of subpodial and stomach papillae. A specimen belonging to genus Leitoscoloplos Day, 1977 is described as "Leitoscoloplos sp.", characterized by the lateral pouches on its abdominal chaetigers, a unique case for the family because these brooding structures have only been previously cited in two species of Scoloplos. Naineris sp. is characterized by the number of its thoracic chaetigers, branchiae, uncini and bilobed abdominal neuropodia with protruding aciculae.     

A bowhead whale in the eastern North Pacific

Bowhead whales occur in the Arctic year‐round. Their movements are largely correlated with seasonal expansions and reductions of sea ice, but a few recent extralimital sightings have occurred in the eastern and western North Atlantic and one was also documented in the western North Pacific over 50 years ago. Here we present details of a juvenile bowhead whale that was photographed and filmed from above and below the water while it was skim‐feeding in Caamaño Sound, BC, Canada on May 31, 2016. This sighting occurred over 2000 km southeast from the nearest known range for this species in the Bering Sea at a time that most bowhead whales in that region would have been migrating northeast. This sighting represents the first and only documentation of a bowhead whale in the eastern North Pacific to date.