Diversity variation and tempo-spatial distribution of Otozamites (Bennettitales) in the Mesozoic of China

Otozamites is a representative fossil leaf morphogenus of the extinct Bennettitales, with an extensive distribution during the Mesozoic, especially in China. Understanding the fossil diversity variation and distribution pattern of Otozamites in China will provide information on biodiversity of bennettitalean plants as well as for reconstruction of palaeogeography and palaeoclimate conditions during the Mesozoic. So far, 46 species of this genus have been described in China, excluding unspecified species. The results show that the fossils of Otozamites are extensively recorded in the Late Triassic, and then reach their maximum development in the Early Jurassic, followed by a reduction in diversity in the Middle and Late Jurassic, and finally become extinct at the end of Early Cretaceous. Geographically, they occur in both Northern and Southern Floristic Provinces in the Mesozoic of China, with a relatively higher abundance in the Southern Floristic Province. It implies that the diversity variation and distribution of Otozamites are closely related to the change of the palaeoclimatic conditions. The warm and humid climate prevailed in the Late Triassic and Early Jurassic in South China, propitious to the development of Otozamites. After the Middle Jurassic, dry and hot climate may have caused the lower diversity level and blocked the development of Otozamites; finally at the end of the Early Cretaceous, the frequent arid climate may be a major cause for the extinction of Otozamites.     

A systematic overview of fossil osmundalean ferns in China: Diversity variation,distribution pattern,and evolutionary implications

The order Osmundales is a unique fern taxon with extensive fossil records in geological past. Diverse osmundalean fossils have been reported from China, ranging in age from the Late Palaeozoic to the Cenozoic. Most of them are based on leaf impressions/compressions, but permineralized rhizomes are also well documented. In this study, we provide a systematic overview on fossil osmundalean ferns in China with special references on diversity variations, distribution patterns, and evolutionary implications. Fossil evidence indicates that this fern lineage first appeared in the Late Palaeozoic in China. The Late Triassic to Middle Jurassic interval was the radiation stage. From the Late Jurassic onward, fossil diversity declined rapidly. Cenozoic osmundalean taxa are represented by the relict species of Osmunda. Geographically, osmundalean fossils are found from both the Northern and Southern phytoprovinces of China, though variations are documented for geographical ranges. The Chinese fossil records cover almost all important stages for the macroevolution of the Osmundales, and contribute to further understanding of evolutionary processes of this peculiar fern lineage.     

Diversity and significance of late cretaceous permineralized plant remains from Hokkaido,Japan

Middle to Late Cretaceous permineralized plants hitherto described from Hokkaido, Japan are summarized. The fossil flora comprises fungi, ferns, gymnosperms and angiosperms. Many modern fern families have been recognized including Anemiaceae, Cyatheaceae, Dennstaedtiaceae, Gleicheniaceae Loxsomaceae, Lygodiaceae and Matoniaceae. Gymnosperms are most abundant in the flora. Some recently-found materials are tentatively introduced with brief comments emphasizing their morphological and taxonomical significance. A bisporangiate flower ofCycadeoidella japonica Ogura shows fine internal anatomy and provides evidence that the cycadeoidalean ovule was a cupulate, unitegmic structure. Vascular tracheids in the synangial wall support the evolution of cycadeoidalean synangia from Paleozoic seed-fern synangia. A new gymnosperm female fructification has a thick envelope comparable to an angiosperm carpel around a large seed. The angiosperms contain various morphologies that require further extensive study.     

Osmunda (Osmundaceae) from the Triassic of Antarctica: an example of evolutionary stasis

Compressed specimens of the fern Osmunda are described from the Triassic of the Allan Hills, Antarctica. The specimens consist of a once pinnate, deeply pinnatifid fertile frond as well as several sterile specimens. Six pinnae are present on the partial fertile rachis, with two sterile pinnae above four fertile pinnae. Both sterile and fertile specimens are virtually identical to the modern species Osmunda claytoniana. Entire fronds are fragmentary; the longest is 21 cm in length. Sterile pinnae are alternate and deeply pinnatifid, with slightly toothed pinnules and dichotomous venation. Fertile pinnae are 1-1.3 cm long, once pinnate, and lack vegetative lamina. Sporangia are clustered, each 300-375 um in diameter, and possess a transverse annulus 6-8 cells long; dehiscence is by a vertical slit. Fronds arise from a rhizome 4 cm long by 1 cm wide; two croziers are present on the rhizome. Two frond segments up to 6 cm long and three deeply pinnatifid pinnae are present on the uppermost part of one rachis. Pinnules are ~4 mm long and 2-3 mm wide. The presence of this Osmunda species in the Triassic demonstrates stasis of frond morphology, both fertile and vegetative, for the genus.     

Additional data on Todites (Osmundaceae) from the Lower Jurassic—with special references to the paleogeographical and stratigraphical distributions in China

Additional material of Todites (Osmundaceae) from the Lower Jurassic Xiangshan Group in Jiangsu and Anhui Provinces, Eastern China is investigated. Five species of Todites are described based on collections (including sterile and fertile pinnae) from eight localities along the Yangtze River, including Todites denticulatus (Brongniart) Krasser, Todites cf. goeppertianus (Muenster) Krasser, Todites nanjingensis sp. nov., Todites princeps (Presl) Gothan and Todites sp. Material of T. denticulatus and T. nanjingensis sp. nov. contains further data of the fertile pinnae. The stratigraphical ranges and the geographical distribution of the genus Todites in China are discussed and reviewed. Available data show that Todites mostly occurs in the Late Triassic to Middle Jurassic of China. The genus was widely distributed in both the Northern and Southern Floristic Provinces of China, and especially abundant and diverse in the Southern Floristic Province.     

Phylogeny of Osmundaceae Inferred from rbcL Nucleotide Sequences and Comparison to the Fossil Evidences

rbcL sequences of 11 of 15 extant species of Osmundaceae which represent all three genera, Osmunda, Todea and Leptopteris. Our phylogenetic analysis concluded: 1) Osmunda subg. Osmunda and subg. Plenasium are monophyletic groups, but subg. Osmundastrum is not. The genus Osmunda is not monophyletic because Todea and Leptopteris are positioned within Osmunda. 2) Osmunda cinnamomea is the most basally positioned species in Osmundaceae, and it can be called as “a living fossil” because a fossil species (O. claytoniites) with almost the same morphology as this species was recorded from the Triassic. 3) Osmunda japonica and O. regalis are very closely related with only one nucleotide difference in the rbcL gene. 4) Greater nucleotide variation (5–7 nucleotides) was found between conspecific samples of O. cinnamomea and O. claytoniana collected from Japan and United States. Each of these two species may comprise more than two biologically differentiated species. Received 7 July 1999/ Accepted in revised form 25 August 1999     

A specialized new species of Ashicaulis (Osmundaceae,Filicales) from the Jurassic of Liaoning,NE China

A new species of structurally preserved fern rhizome, Ashicaulis plumites (Osmundaceae, Filicales), is described from the Middle Jurassic Tiaojishan Formation in western Liaoning Province, NE China. The new species is characterized by a peculiar sclerenchyma mass in the petiolar vascular bundle concavity. This sclerenchyma mass varies from a linear-shape to a mushroom-like shape with a remarkable outward protuberance, which distinguishes the present new species from other Ashicaulis species. Such a protuberance is very rare among osmundaceous ferns, and should represent a unique type for sclerenchymatous tissue in the osmundaceous vascular bundle concavity. Recognition of the peculiar structure of this new fossil species enriches anatomical diversity of permineralized osmundaceous ferns, indicating that the family Osmundaceae might have experienced a remarkable diversification during the Middle Jurassic in NE China. The new species show anatomical similarities to Osmunda pluma Miller from the Palaeocene of North America. The occurrence of A. plumites in the Middle Jurassic of China provides a new clue for understanding the evolution of some members of the living subgenus Osmunda.     

Diversity and distribution of entomopathogenic nematodes (Nematoda: Steinernematidae, Heterorhabditidae) and their bacterial symbionts (gamma-Proteobacteria: Enterobacteriaceae) in Jordan

Until now, only a few systematic surveys of entomopathogenic nematodes (EPN) have been conducted in Middle Eastern countries. Many of the recovered EPN species in this region have shown to own distinctive qualities that enable their survival in unique environments, such as high temperatures and low moisture levels tolerance. These new species and strains, with unique environmental tolerances, are more suitable for their consideration in pest management programs in xerophytic regions. With this background in mind, we recently conducted a survey of EPN in Jordan. This study records for the first time the diversity and distribution of these nematodes and their bacterial symbionts in this country. Jordan’s three geographic regions: (1) the highlands, (2) Jordan valley and (3) the desert region were sampled. Within each region, natural habitats and agricultural regions characteristic to each region were considered for sampling purposes. Four EPN species including three Steinernema and one Heterorhabditis were recovered. Nematodes were identified using a combination of molecular markers and classic morphological diagnostic tools. Bacterial symbionts were identified by analysis of 16S rRNA sequences. Abiotic characteristics such as soil type, soil pH, and elevation were also recorded. We herein report the diversity of EPN species in Jordan and discuss their potential in Biocontrol and IPM programs for this country.     

Diversity and geographic distribution of desmids and other coccoid green algae

Taxonomic diversity of desmids and other coccoid green algae is discussed in relation to different species concepts. For want of unambiguous criteria about species delimitation, no reliable estimations of global species richness can be given. Application of the biological species concept is seriously hampered by lack of sexual reproduction in many species. Molecular analyses demonstrated cases of close affiliation between morphologically highly different taxa and, contrary, examples of little relationship between morphologically similar taxa. Despite the fact that desmids and chlorococcal algae, because of their microbial nature, can be readily distributed, cosmopolitan species are relatively scarce. The geographic distribution of some well-recognizable morphospecies is discussed in detail. Of some species a recent extension of their area could be established, e.g., in the desmids Micrasterias americana and Euastrum germanicum, and in the chlorococcaleans Desmodesmus perforatus and Pediastrum simplex. Special Issue: Protist diversity and geographic distribution. Guest editor: W. Foissner.     

The fossil record and taphonomy of butterflies and moths (Insecta,Lepidoptera): implications for evolutionary diversity and divergence-time estimates

Background

It is conventionally accepted that the lepidopteran fossil record is significantly incomplete when compared to the fossil records of other, very diverse, extant insect orders. Such an assumption, however, has been based on cumulative diversity data rather than using alternative statistical approaches from actual specimen counts.

Results

We reviewed documented specimens of the lepidopteran fossil record, currently consisting of 4,593 known specimens that are comprised of 4,262 body fossils and 331 trace fossils. The temporal distribution of the lepidopteran fossil record shows significant bias towards the late Paleocene to middle Eocene time interval. Lepidopteran fossils also record major shifts in preservational style and number of represented localities at the Mesozoic stage and Cenozoic epoch level of temporal resolution. Only 985 of the total known fossil specimens (21.4%) were assigned to 23 of the 40 extant lepidopteran superfamilies. Absolute numbers and proportions of preservation types for identified fossils varied significantly across superfamilies. The secular increase of lepidopteran family-level diversity through geologic time significantly deviates from the general pattern of other hyperdiverse, ordinal-level lineages.

Conclusion

Our statistical analyses of the lepidopteran fossil record show extreme biases in preservation type, age, and taxonomic composition. We highlight the scarcity of identified lepidopteran fossils and provide a correspondence between the latest lepidopteran divergence-time estimates and relevant fossil occurrences at the superfamily level. These findings provide caution in interpreting the lepidopteran fossil record through the modeling of evolutionary diversification and in determination of divergence time estimates.

Electronic supplementary material

The online version of this article (doi:10.1186/s12862-015-0290-8) contains supplementary material, which is available to authorized users.     

Diversity and biogeography of testate amoebae

Testate amoebae are amoeboid protists inhabiting a test (shell). They occur globally in soils, wetlands and freshwater, especially peats and mosses. They are of ancient origin, dating from at least the Mesozoic, with possible ancestors as old as the Neoproterozoic. Approximately 2,000 taxa have been described—a number which could easily rise to 4,000 with comprehensive recording. Whilst many protists appear to be cosmopolitan as morphospecies, some of the larger testate species (exceeding 100 μm) have long been considered, controversially, to be geographically restricted. Definitive conclusions have often been confounded by gaps in distributional data and misidentification. Recent increases in recording from previously little known regions, and the rise of molecular taxonomy, have started to resolve outstanding issues—processes still far from complete. Accordingly, biogeographical studies have concentrated on “flagship” species—those which can be identified with certainty and are sufficiently recorded to determine their ecological ranges. Apodera vas (Certes) has been proved to be largely restricted to the Gondwanaland continents and sub-Antarctic islands, but absent from the Holartic despite the availability of much suitable habitat. An early analysis postulated a Mesozoic origin of the species and a distribution influenced by continental drift. Recent molecular evidence could imply a later origin. Either way, its current distribution is clearly influenced by the pattern of global wind currents and lack of lowland tropical habitat. By contrast a “Gondwana-tropical” group of species appears to be restricted to latitudes unaffected by glaciation. Instances of local endemism, such as restriction to a single island, are also known, which await molecular evidence for substantiation. Special Issue: Protist diversity and geographic distribution. Guest editor: W. Foissner.     

Diversity and duplication of DQB and DRB-like genes of the MHC in baleen whales (suborder: Mysticeti)

The molecular diversity and phylogenetic relationships of two class II genes of the baleen whale major histocompatibility complex were investigated and compared to toothed whales and out-groups. Amplification of the DQB exon 2 provided sequences showing high within-species and between-species nucleotide diversity and uninterrupted reading frames consistent with functional class II loci found in related mammals (e.g., ruminants). Cloning of amplified products indicated gene duplication in the humpback whale and triplication in the southern right whale, with average nucleotide diversity of 5.9 and 6.3%, respectively, for alleles of each species. Significantly higher nonsynonymous divergence at sites coding for peptide binding (32% for humpback and 40% for southern right) suggested that these loci were subject to positive (overdominant) selection. A population survey of humpback whales detected 23 alleles, differing by up to 21% of their inferred amino acid sequences. Amplification of the DRB exon 2 resulted in two groups of sequences. One was most similar to the DRB3 of the cow and present in all whales screened to date, including toothed whales. The second was most similar to the DRB2 of the cow and was found only in the bowhead and right whales. Both loci showed low diversity among species and apparent loss of function or altered function including interruption of reading frames. Finally, comparison of inferred protein sequence of the DRB3-like locus suggested convergence with the DQB, perhaps resulting from intergenic conversion or recombination.Electronic Supplementary Material Supplementary material is available for this article at     

松科冷杉属植物的化石历史和现代分布

冷杉是北半球阴暗针叶林的优势种和建群种,现全世界共有52种1亚种12变种,在北半球形成南欧、北美和东亚三个分布中心,这三个地区也是冷杉属化石最丰富的地区。在垂直分布上,冷杉集中分布于1000～2000m（15种）和2500～4000m（13种）两个海拔地段。在中国,冷杉植物呈南北间断分布,集中分布在横断山地区。冷杉属的特有现象和孑遗分布现象都十分突出,有7个种呈孑遗分布。根据冷杉属的地史分布和现代分布的研究并结合最新的系统演化资料,本文推测冷杉属于白垩世中期起源于北半球的中高纬度地区,始新世以后,随着全球气候的变冷,逐步向南迁移,由于喜马拉雅山脉、阿尔卑斯山、落基山脉抬升及东亚季风气候的出现以及第四纪冰期的影响而形成了现代间断的分布格局。冷杉与银杉、金钱松等其它松科植物的形成模式十分相似。     

California dragonfly and damselfly (Odonata) database: temporal and spatial distribution of species records collected over the past century

The recently completed Odonata database for California consists of specimen records from the major entomology collections of the state, large Odonata collections outside of the state, previous literature, historical and recent field surveys, and from enthusiast group observations. The database includes 32,025 total records and 19,000 unique records for 106 species of dragonflies and damselflies, with records spanning 1879–2013. Records have been geographically referenced using the point-radius method to assign coordinates and an uncertainty radius to specimen locations. In addition to describing techniques used in data acquisition, georeferencing, and quality control, we present assessments of the temporal, spatial, and taxonomic distribution of records. We use this information to identify biases in the data, and to determine changes in species prevalence, latitudinal ranges, and elevation ranges when comparing records before 1976 and after 1979. The average latitude of where records occurred increased by 78 km over these time periods. While average elevation did not change significantly, the average minimum elevation across species declined by 108 m. Odonata distribution may be generally shifting northwards as temperature warms and to lower minimum elevations in response to increased summer water availability in low-elevation agricultural regions. The unexpected decline in elevation may also be partially the result of bias in recent collections towards centers of human population, which tend to occur at lower elevations. This study emphasizes the need to address temporal, spatial, and taxonomic biases in museum and observational records in order to produce reliable conclusions from such data.     

Diversity and distribution of freshwater copepods (Crustacea) in southeastern Mexico

Plankton and littoral samples were obtained from several ponds and lagoons of different environments in the Mexican state of Tabasco. These systems are located in the Grijalva-Villahermosa or the Usumacinta basins. Twenty-two copepod species were recorded, most of them cyclopoids with neotropical and Caribbean affinities. Physical and chemical data associated with the species, as well as morphometric parameters of the surveyed systems were measured and analyzed. A correlation was found between diversity and parameters related to the productivity and the shoreline development (D _L) of the systems; therefore the littoral heterogeneity could be used to predict the species number in shallow tropical systems. At a regional level, the Tabasco copepod fauna is similar to that known from the Yucatan Peninsula, but different from the faunal associations of central Mexico. Distributional patterns differed slightly between both basins and appear to be correlated with climatic variations. This first survey of the freshwater copepod fauna in the state of Tabasco shows it to be constituted mainly by neotropical forms.     

Araucariaceae (Pinopsida): Aspects in palaeobiogeography and palaeobiodiversity in the Mesozoic

The paper examines recent information on the history of the ‘southern hemisphere’ conifer family Araucariaceae and gives supplementary notes to previously published monographs. Important data from the Mesozoic fossil record are presented and summarized to describe the ancient diversity and distribution of Araucariaceae. Information on the origin of the family and oldest fossil records of the present-day genera are assembled. Existing models on phylogenetic relationships within the family inferred from molecular data are compared with relationships between the genera determined from morphological data. Reasons for disappearance of representatives of this conifer family in the latest Cretaceous in North America and Europe are briefly discussed.     

Diversity of the free-living marine and freshwater Copepoda (Crustacea) in Costa Rica: a review

The studies on marine copepods of Costa Rica started in the 1990’s and focused on the largest coastal-estuarine systems in the country, particularly along the Pacific coast. Diversity is widely variable among these systems: 40 species have been recorded in the Culebra Bay influenced by upwelling, northern Pacific coast, only 12 in the Gulf of Nicoya estuarine system, and 38 in Golfo Dulce, an anoxic basin in the southern Pacific coast of the country. Freshwater environments of Costa Rica are known to harbor a moderate diversity of continental copepods (25 species), which includes 6 calanoids, 17 cyclopoids and only two harpacticoids. Of the +100 freshwater species recorded in Central America, six are known only from Costa Rica, and one appears to be endemic to this country. The freshwater copepod fauna of Costa Rica is clearly the best known in Central America. Overall, six of the 10 orders of Copepoda are reported from Costa Rica. A previous summary by 2001 of the free-living copepod diversity in the country included 80 marine species (67 pelagic, 13 benthic). By 2009, the number of marine species increased to 209: 164 from the Pacific (49% of the copepod fauna from the Eastern Tropical Pacific) and 45 from the Caribbean coast (8% of species known from the Caribbean Basin). Both the Caribbean and Pacific species lists are growing. Additional collections of copepods at Cocos Island, an oceanic island 530 km away of the Pacific coast, have revealed many new records, including five new marine species from Costa Rica. Currently, the known diversity of marine copepods of Costa Rica is still in development and represents up to 52.6% of the total marine microcrustaceans recorded in the country. Future sampling and taxonomic efforts in the marine habitats should emphasize oceanic environments including deep waters but also littoral communities. Several Costa Rican records of freshwater copepods are likely to represent undescribed species. Also, the biogeographic relevance of the inland copepod fauna of Costa Rica requires more detailed surveys.     

Diversity and distribution of the mangrove forests in Taiwan

In a survey of 1992 to 1994, mangrove forests withfour species of true mangroves, Kandelia candel(L.) Druce, Avicennia marina(Forsk.) Vierh.,Rhizophora stylosaGriff., and Lumnitzera racemosaWilld., were found at 22locations in the west coast of Taiwan. The northernrange of their distribution was at Tanshui Estuary(Latitude 25^°11N) and the southern range atTapen Bay (22^°28N). The total area wasestimated to be 286.95 ha. There was an obvious changein species composition and a decrease in speciesnumber of true mangroves from south to north: the fourspecies dominated by A. marinain thesouth and K. candelas thesole species in the north. Air temperature associatedwith sea surface temperature and oceanic currents inwinter, but not soil property, was found to be theprimary environmental factor, affecting the diversityand distribution of true mangroves in Taiwan as wellas in the northeast region of Asia.     

Diversity and geographic distribution of ciliates (Protista: Ciliophora)

About 4,500 free-living ciliate morphospecies have been described, applying an average synonymy rate of 20%. We estimate that 83–89% of the ciliate diversity is still undescribed, using the following probabilities: detailed habitat studies suggest that the described number of morphospecies must be doubled: 4,500 → 9,000; this figure has to be increased by about 50% due to species with similar interphase morphology but different resting cysts: 9,000 → 13,500; the genetic and molecular data suggest that this value must be doubled or trebled: 13,500 → 27,000 to 40,000 free-living, biological ciliate species. The knowledge on geographic distribution of ciliates heavily depends on flagship species and statistical analyses because reliable faunistic studies are rare and molecular data are still in its infancy. We present a list of 52 ciliate flagship species as a testable hypothesis, i.e., the hypothesis of restricted distribution of certain ciliate species must be refused when a considerable number of them is found in all or most biogeographic regions. Flagship species and statistical analyses consistently show Gondwanan and Laurasian ciliate communities, suggesting that the split of Pangaea deeply influenced ciliate distribution and rare species play a key role in geographic differentiation. However, there is also substantial evidence for continental, regional, and local endemism of free-living ciliates. The molecular studies usually show a high level of genetic diversity underlying ciliate morphospecies, suggesting that morphologic and molecular evolution may be decoupled in many ciliate species. Molecular studies on ciliate biogeography are at variance, possibly because most are still focusing on single molecular markers. In sum, the data indicate that ciliate biogeography is similar to that of plants and animals, but with an increased proportion of cosmopolites, favouring the moderate endemicity model. Special Issue: Protist diversity and geographic distribution. Guest editor: W. Foissner.