Seagrass monitoring at Perezoso, Cahuita, Costa Rica (CARICOMP site)

The seagrass of Perezoso (Cahuita National Park, Caribbean coast of Costa Rica) was monitored using the CARICOMP protocol. Productivity (2.7 +/- 1.15 g/m2/d; n=74) was intermediate, compared to other Caribbean sites. Total biomass was intermediate to high (750-1500 g/m2) at most CARICOMP sites (Colombia, Cuba, Mexico, Puerto Rico and Venezuela) including Costa Rica (822.8 +/- 391.84 g/m2; n=32). Turnover rates were high (5.5 +/- 1.36%; n=74) compared to what was found in March and August at other sites. Shoot densities average 725 shoots/m2, in the Caribbean region, while in Costa Rica the value was higher (1184 +/- 335.5 shoots/m2). Average leaf length and width in the entire region were 14.4 cm and 10.6 mm, respectively, similar to what we found, but leaf area index average 3.4 m2 m(-2), higher than what was found in Costa Rica (0.92 m2 m(-2)). At Cahuita, seagrass productivity was significantly lower in March 2005 compared with the previous six years, and biomass has decreased with time. Seagrass productivity and biomass are being affected by the maximum temperatures, which increased by almost 10 degrees C from 1999 to 2005, and show a high negative correlation. Turnover rate and temperature were not correlated. Recreational boating, swimming and nutrient loading from deforested lands in the coast, the upstream rivers and local pollution are potential sources of impact to the seagrass beds at Cahuita.     

Addendum to the checklist of the helminth parasites of vertebrates in Costa Rica

In this work, we present an addendum to the "Checklist of the helminth parasites of vertebrates in Costa Rica" with a parasite-host list as well as a host-parasite list. This addendum updates the available information on this group of parasites in Costa Rica, since very recently a new input has been made to describe the helminth fauna of vertebrates, particularly at the Area de Conservación de Guanacaste. In this paper, we add 33 records, representing 23 species. This raises the number of helminth species described in vertebrates from Costa Rica to 325, represented by 89 species of digeneans, 23 of monogeneans. 63 of cestodes, 13 of acanthocephalans, and 137 of nematodes. In total, 133 species of vertebrates have been studied for helminths in Costa Rica (31 species of fishes. 7 amphibians, 18 reptiles, 40 birds, and 37 mammals). Currently, 67 species (20.6 %) have been recorded as new species from Costa Rica and most of them are endemic to particular regions. The Colecci6n de Helmintos de Costa Rica, housed at the Universidad de Costa Rica (UCR), San José, is the depositary of only 23% of the species recorded so far; however this situation is changing and people recognizes.     

New genera and species of ericaceae (Vaccinieae) from Costa Rica and Panama

Two new monotypic genera,Didonica andUtleya, are described, withD. pendula from Panama andU. costaricensis from Costa Rica.Disterigma trimera (Panama),D. utleyorum (Costa Rica, Panama, Colombia, and Ecuador),Lateropora santafeensis (Panama),Lysiclesia panamensis (Panama),Macleania talamancensis (Costa Rica),Themistoclesia costaricensis (Costa Rica) andT. horquetensis (Panama),Vaccinium costaricense andV. orosiense (both from Costa Rica) and V.jefense (Panama) are all described as new. New combinations are provided for the PanamanianVaccinium floccosum (=Symphysia floccosa) and the West IndianVaccinium racemosum (=Symphysia racemosa). Keys are provided for the Central American species ofDisterigma andThemistoclesia, the species ofLateropora andLysiclesia, and the Costa Rican and Panamanian species ofVaccinium. Six new species are illustrated.     

A new eutardigrade from Costa Rica with taxonomical and zoogeographical remarks on Costa Rican tardigrades

In a moss sample collected in Costa Rica, 63 specimens and 13 eggs of the new species were found. Mesobiotus pseudopatiens sp. nov. belongs to the harmsworthi group and is most similar to Mesobiotus patiens, but it differs from it mainly by smaller eggs, longer flexible portions of egg processes and certain morphometric characters of adults. In addition, after re-examination of specimens of the genus Milnesium collected in Costa Rica, a new record of Milnesium kogui may be added to Costa Rican fauna. The paper also discusses taxonomical problems and the zoogeography of Costa Rican tardigrades, which partially agree with hypotheses of Great American Biotic Interchange and Mexican Transition Zone. A large number of so-called ‘Costa Rican species’ are doubtful taxa with ‘cosmopolitan’ distribution; the largest number of species, however, have tropical/subtropical or neotropical distribution. Certain species from colder regions are also present in the mountains of Costa Rica.

http://zoobank.org/urn:lsid:zoobank.org:pub:F6F6195E-0888-4279-A3AF-422642F8B40     

Reports in Pteridaceae (Filacales) family in the Neotropics

Several contributions to the Neotropical pteridophyte flora are made in this paper with the range extensions for four species of Adiantum, two species of Doryopteris and one species of Eriosorus. The species concerned are: A. polyphyllum Willd. for Nicaragua and Costa Rica; A. trichochlaenum Mickel et Beitel for Guatemala and Costa Rica; A. villosissimum Mett. ex Kuhn for Costa Rica; A. wilesianum Hook. for Nicaragua; D. nobilis (T. Moore) C. Chr. for Costa Rica, Colombia and Venezuela; D. redivida Fée for Panama; and E. hirtus (Kunth) Copel. for Costa Rica. The concept of D. pedata (L.) Fée is redefined.     

Long-term comparison of the fish community in a Costa Rican rocky shore marine reserve

Despite their role in supporting diverse marine fish communities, tropical rocky shores and reefs have attracted less research and fewer targeted conservation efforts compared to coral reefs. We studied fish community composition in Playa Blanca Marine Reserve (9 degrees 40' N - 84 degrees 40' W), a rocky shore site on the central Pacific coast of Costa Rica. We conducted visual surveys of fishes along six strip transects soon after the area was designated a marine reserve in 1995, then again in 2006 following an eleven-year period of complete protection. We recorded a total of 31 406 sightings of 72 species from 30 families. Pomacentrids (42.5%), labrids (16.6%) and haemulids (14.8%) dominated the community, accounting for > 70% of total fish abundance. In comparison to other sites in the region, the fish community was more similar to one reported from Bahia Honda, Panama (7 degrees 50' N - 81 degrees 35 W) than from the geographically more proximate Culebra Bay, Costa Rica (10 degrees 45' N - 85 degrees 43 W). Sixty-one species from 26 families were recorded in 1995; sixty-nine species from 28 families in 2006. Our results suggest that the Playa Blanca Marine Reserve is fulfilling its conservation role. Average fish abundance, species richness and Shannon's index of community diversity were greater in 2006 than 1995, and fish community composition varied significantly within each transect among years. Much of the change in community composition among years resulted from spatial and temporal variation in the abundance of a few dominant species, including Abudefduf troschelli, Thalassoma lucasanum, Chromis atrilobata, and Stegastes flavilatus/acapulcoensis. Of the 48 species/species groups recorded in both years, 37 (77%) were more abundant in 2006 than 1995, and several species recorded as uncommon or rare in 1995 were more frequent and abundant in 2006. Fish community composition and the abundance of some species changed in the reserve over time, but further study is needed to determine the role of small-scale marine reserves in the conservation of tropical marine biodiversity.     

Ogataea falcaomoraisii sp. nov., a sporogenous methylotrophic yeast from tree exudates

Thirteen strains of a new ascospore-forming, methanol-assimilating yeast species were isolated from sap exudates of Sclerolobium sp. (carvoeiro) in two forest fragments in the state of Toncantins, Brazil, and from Hymenaea courbaril (guapinol, jatobá) in Guanacaste Province, Costa Rica. Analysis of the sequences of the D1/D2 large-subunit ribosomal DNA showed that the species belongs to the genus Ogataea (syn. Pichia), and it was described as Ogataea falcaomoraisii. The closest relatives are Candida ortonii and C. nemodendra. The type culture is UFMG-T264-1T (= CBS 9814T = NRRL Y-27756).     

Three new species of Elleanthus (Orchidaceae) from Central America

Elleanthus stolonifer andE. tillandsioides are new species in theE. poiformis complex of sectionChloidelyna.Elleanthus lentii is a new species in sectionStachydelyna. Elleanthus stolonifer is widespread in the mountains of Costa Rica and Panama;E. tillandsioides is found only in the lowland forests of southeastern Costa Rica;E. lentii is limited to the Cordillera de Guanacaste of Costa Rica.     

A bird's eye survey of Central American planorbid molluscs

In the course of two trips to Central America (June 1967 and JulyAugust 1976) I had the opportunity of collecting topotypic specimens of Planorbis nicaraguanus Morelet, 1849, anatomically defined in this paper, and of P. yzabalensis Crosse & Fischer, 1879, the identity of the latter with Drepanotrema anatinum (Orbigny, 1835) is confirmed. The following planorbid species were also found: Helisoma trivolvis (Say, 1817) in Nicaragua, Guatemala, Costa Rica and Belize; H. duryi (Wetherby, 1879) in Costa Rica; Biomphalaria helophila (Orbigny, 1835) in Guatemala, Belize, Nicaragua, Costa Rica and El Salvador; B. kuhniana (Clessin, 1883) in Panama; B. obstructa (Morelet,1849) in Guatemala, Belize and El Salvador; B. straminea (Dunker, 1848) in Costa Rica; B. subprona (Martens, 1899) in Guatemala; D. anatinum (Orbigny,1835) in Belize, Guatemala, Nicaragua and Costa Rica; D. depressissimum (Moricand,1839) in Nicaragua, Costa Rica and Panama; D. lucidum (Pfeiffer, 1839) in Guatemala, Belize and Nicaragua; D. surinamense (Clessin, 1884) in Costa Rica and Panama; and Gyraulus percarinatus sp. n. in Panama. The occurrence of B. kuhniana and D. surinamense is first recorded in Central America, and Gyraulus percarinatus is the first representative of the genus provenly occurring in the American continent south of the United States. The following synonymy is proposed: Planorbis declivis Tate, 1870 = Biomphalaria helophila (Orbigny, 1835); Planorbis isthmicus Pilsbry, 1920 = Biomphalaria kuhniana (Clessin, 1883); Planorbis cannarum Morelet, 1849 and Segmentina donbilli Tristram, 1861 = Biomphalaria obstructa (Morelet, 1849); and Planorbis yzabalensis Crosse & Fischer, 1879 = Drepanotrema anatinum (Orbigny, 1835), confirming Aguayo (1933).     

Editorial for ‘Issue focus on 2nd Costa Rica biophysics symposium — March 11th–12th, 2021’

This Editorial describes both the motivation for, and the five articles appearing in, the Issue Focus dedicated to the 2nd Costa Rica Biophysics Symposium which was held in March 2021. Some recent history about both the symposium and developments in science occurring within Costa Rica is described. 

The Costa Rica Biophysics Symposium was conceived as a forum for faculty, scholars and students interested on cutting-edge topics in biophysics and related fields. Following the success of the first event organized in 2019 (Solís et al (2020), the second edition of the symposium took place on March 2021 with the support of the Academia Nacional de Ciencias de Costa Rica (ANC, National Academy of Sciences of Costa Rica), the International Union of Pure and Applied Biophysics (IUPAB), the German Society of Biophysics (DGfB), and the Universidad Nacional of Costa Rica (UNA). The symposium aimed to reinforce and enhance the novel network of investigators established in the 2019 event. Participation of Costa Rican presenters, either located in the country or abroad, and foreign scientists from the USA, Germany, France, and Switzerland (Solís et al. (2021a) translated into an expansion and internationalization of the previous network. Moreover, the symposium attracted a broad international audience, which increases the opportunities of further international collaboration.The meeting was organized into 14 presentations and one keynote lecture. It was attended by researchers of the three main universities of Costa Rica: Universidad Nacional (UNA), Universidad de Costa Rica (UCR) and Tecnológico de Costa Rica (TEC). Presenters from international universities were also present, including UT Southwestern Medical Center, USA; Klinikum Nürnberg Medical School, Germany; École Polytechnique Fédérale de Lausanne, Switzerland; Institut de Neurosciences de Montpellier, France; University of California Berkeley, USA; and The University of Chicago, USA. The topics presented in the symposium were diverse and covered cutting-edge biophysical research areas. The presentations ranged from channel electrophysiology, machine learning focused on cellular microscopy, prediction of protein–protein interactions, channelopathies and novel biophysical techniques, among others (Solís et al., 2021a). Furthermore, each lecture was followed by questions from the audience, allowing discussion, engagement and interaction between researchers in spite of the limitations of a virtual symposium. The closing event for the symposium was a lecture by the world-renowned biophysicist Francisco Bezanilla from the University of Chicago, who engaged the audience into a master presentation of his vast research on protein voltage-sensor domains (VSD) with a focus on his recent work on the non-canonical mechanisms for VSD-mediated regulation of pore domains in voltage-gated potassium channels (Carvalho-de-Souza and Bezanilla 2019). After the consequent discussion, the symposium finished with a networking activity, where audience and presenters were able to socialize and share experiences.     

Diterpenes and other components of Croton hirtus (Euphorbiaceae)

The roots of Croton hirtus (Euphorbiaceae) collected in Paraiso, Cartago (Costa Rica) afforded, in addition to the few known metabolites, 20 new compounds: the bis-nor dolabradane 1, the dolabradanes 2 and 3, the kauranes 4-7, the cyclopropakauranes 8 and 9, the hirtusanes 10-15, the germacradiene esters 16-18 and the C-25 compound 21, presumably formed by a Diels-Alder reaction between compound 18 and a monoterpene. All structures were elucidated using high field 1D and 2D NMR techniques. MS fragmentation patterns are here reported. The absolute configurations of 4 and 9 were elucidated by using circular dichroism. The separation was performed with modern chromatographic technics.     

Metschnikowia santaceciliae,Candida hawaiiana,and Candida kipukae,three new yeast species associated with insects of tropical morning glory

A new haplontic heterothallic species of Metschnikowia and two related asexual yeast species were discovered in morning glory flowers and associated insects. Metschnikowia santaceciliae came from Conotelus (Coleoptera: Nitidulidae) and other insect species associated with flowers of Ipomoea indica (purple morph) in Costa Rica. Candida hawaiiana and Candida kipukae were found in I. indica (syn. I. acuminata) and its insects in Hawai'i, and the former was also isolated in a specimen of Conotelus collected on Merremia tuberosa (Convolvulaceae) in Costa Rica. The three species have nearly identical physiological profiles, typical of the genus Metschnikowia. The sequences of the D1/D2 domains of their large subunit ribosomal DNA confirm that the species belong to the Metschnikowia clade, even though they share a very low degree of inter-relatedness. M. santaceciliae is a sister species to Metschnikowia continentalis. C. kipukae is a basal member of the large-spored Metschnikowia subclade, and C. hawaiiana has a weak affinity to Metschnikowia agaves. Two of the three species appear to be endemic. The type cultures are: Metschnikowia santaceciliae, strains UWO(PS)01-517a1=CBS 9148=NRRL Y-27475 (h(+, holotype) and UWO(PS)01-520a1=CBS 9149=NRRL Y-27476 (h-, isotype); Candida hawaiiana, strain UWO(PS)91-698.3=CBS 9146=NRRL Y-27473; Candida kipukae, strain UWO(PS)00-669.2=CBS 9147=NRRL Y-27474.     

Lepanthes variabilis (Orchidaceae: Pleurothallidinae), a new endemic species from Costa Rica

Lepanthes variabilis, a new species from Costa Rica, is described and illustrated. It is endemic to the northern part of the Talamanca mountain range, from 2750–2850 m. It is compared to the similar L. minutilabia, which also occurs in Costa Rica.     

Reproductive plasticity in <Emphasis Type="Italic">Petrolisthes armatus</Emphasis> (Anomura,Porcellanidae): a comparison between a Pacific and an Atlantic population

The porcellanid crab Petrolisthes armatus, with a known geographic distribution covering a wide range of latitudes, was selected to conduct a comparative study on egg production and reproductive output between two populations from Pacific and Atlantic coasts. Ovigerous females were collected between September and November 2005 in Punta Morales, Pacific coast of Costa Rica (n = 137) and from March 2005 to July 2006 in Araçá region, São Paulo, Brazil (n = 46). The mean size of females was statistically different between both populations with larger females from Brazil than Costa Rica (7.9 ± 1.31 and 6.6 ± 0.95 mm CW, respectively). Likewise, egg production was significantly different in both populations and started in Pacific Costa Rica at a smaller female size than in Brazil. Specimens from Pacific Costa Rica produced roughly three times more eggs than equally sized females from Brazil, while newly extruded embryos were larger in Brazil than in Costa Rica (0.045 and 0.039 mm³, respectively). Egg volume increased during embryogenesis by 112.8 and 164.5% in Costa Rican and Brazilian populations, respectively. The egg water content increased steadily in both populations; however, eggs produced in Brazil contained always more water than those from the same developmental stage in Costa Rica. Average reproductive output (based on dry weight) was substantially lower in Brazil (0.031) than in Costa Rica (0.065). Our results confirm an impressive intraspecific plasticity of reproductive features in an intertidal decapod. The observed phenotypical variability might be related to local environmental conditions as well as to the location of the studied population concerning its geographic range of distribution.     

A new species of Rhopalosiphum (Hemiptera, Aphididae) on Chusquea tomentosa (Poaceae, Bambusoideae) from Costa Rica

The new species Rhopalosiphum chusqueae Pérez Hidalgo & Villalobos Muller, is described from apterous viviparous females caught on Chusquea tomentosa in Cerro de la Muerte (Costa Rica). The identity of the species is supported both by the morphological features and by a molecular phylogenetic analysis based on a fragment of the mitochondrial DNA containing the 5' region of the cytochrome c oxidase 1 (COI) and on the nuclear gene coding for the Elongation factor-1 alpha (EF1α). The taxonomic position of the new species is discussed. An identification key to the Aphidinae species living on plants of Bambusoideae (Poaceae) is presented.     

Nicaraguan population data on LDLR,GYPA, D7S8, HBGG,GC and HLA-DQA1 loci

Nicaraguans have become the most numerous and fastest increasing minority in Costa Rica: at present they represent around 6% of the total population of the country. We have analyzed the allele and genotype frequencies of six PCR-based genetic markers (LDLR, GYPA, HBGG, D7S8, GC, and HLA-DQA1) in 100 unrelated Nicaraguans living in Costa Rica. All loci studied were in Hardy-Weinberg equilibrium. Some statistical parameters of forensic interest were also calculated (h, PD and CE). Allele frequencies of the markers HLA-DQA1 and GYPA were found to be significantly different between the populations of Nicaragua and Costa Rica. Nevertheless, genetic distances showed that Nicaragua is close to other Hispanic-admixed populations like those from Argentina, Chile, Colombia, Costa Rica, and USA Hispanics. The loci set was assessed to be useful for paternity testing and individual identification in the Nicaraguan population residing in Costa Rica.     

Simplified media for spiroplasmas associated with tabanid flies

Traditionally, isolation, maintenance, and testing of Spiroplasma species (Mollicutes: Entomoplasmatales) from horse flies (Tabanus spp.) and deer flies (Chrysops spp.) (Diptera: Tabanidae) have been accomplished in the complex M1D medium. A relatively inexpensive, simplified medium for tabanid spiroplasmas could expedite procedures that require large quantities of growth medium. Nine strains of spiroplasmas, eight from tabanids and one from mosquitoes, were cultured in three simplified broth media, R2, R8-1, and C-3G, and in M1D. There was no significant difference in the rate of spiroplasma growth in M1D and the three simplified media. R2 medium supported the growth of tabanid spiroplasmas more consistently and with better morphology through 10 subcultures than did the other simplified media. Primary isolations were made in R2 medium from tabanids collected (i) in Georgia, U.S.A., with 10 isolations from 10 flies and (ii) in coastal Costa Rica, with isolation rates of 70% (28/40) and 73% (27/37), respectively, for R2 and M1D. Of the seven group VIII field isolates from Costa Rica, four were capable of sustained growth in R2, and three were triply cloned in this simplified medium. These results suggest that the simplified medium R2 is suitable for many procedures with tabanid spiroplasmas.     

Evolution of the organization for tropical studies

The Organization for Tropical Studies (OTS)/Organización para Estudios Tropicales (OET) has evolved in many ways since its founding in 1963 as a non-profit consortium offering graduate courses and facilitating research in tropical ecology in Costa Rica. By 2002, its international membership included about 65 institutions, including four from Costa Rica. It had developed three Costa Rican field stations (La Selva, Las Cruces, and Palo Verde) with excellent facilities for teaching and research, and it was constructing a new Costa Rican office at the University of Costa Rica. Combinations of internal and external pressures influenced OTS to develop in new directions in the 1980s and 1990s. It became more diversified and more concerned with applied science in its traditional areas of graduate education and research facilitation. The Organization also evolved into new niches: more applied biology, professional education, environmental education and policy, conservation efforts, and an expanded geographic distribution to other Latin American countries. OTS was composed of changing combinations of people (Boards, members, staff) with evolving and competing priorities for limited financial resources. External environmental changes also shaped OTS's evolution. New problems of increased tropical deforestation, the emergence of the biodiversity "crisis" and conservation biology, global climate change, and calls for sustainable development affected OTS constituents and funding priorities of governments and foundations. Both internal and external pressures have in some cases demanded for OTS to improve its relationship with: Costa Rican biologists and their institutions, the Costa Rican government, and Costa Ricans living around the three OTS field stations.     

Checklist of the helminth parasites of vertebrates in Costa Rica

Helminth parasites of vertebrates have been studied in Costa Rica for more than 50 years. Survey work on this group of parasites is far from complete. We assembled a database with all the records of helminth parasites of wild and domestic vertebrates in Costa Rica. Information was obtained from different sources such as literature search (all published accounts) and parasite collections. Here we present a checklist with a parasite-host list as well as a host-parasite list. Up to now, 303 species have been recorded, including 81 species of digeneans, 23 monogeneans, 63 cestodes, 12 acanthocephalans, and 124 nematodes. In total, 108 species of vertebrates have been studied for helminths in Costa Rica (31 species of fishes, 7 amphibians, 14 reptiles, 20 birds, and 36 mammals). This represents only 3.8% of the vertebrate fauna of Costa Rica since about 2,855 species of vertebrates occur in the country. Interestingly, 58 species (19.1 %) were recorded as new species from Costa Rica and most of them are endemic to particular regions. Considering the valuable information that parasites provide because it is synergistic with all the information about the natural history of the hosts, helminth parasites of vertebrates in Costa Rica should be considered within any initiatives to accomplish the national inventory of biological resources. Starting with this compilation work, the Colección de Helmintos de Costa Rica (CHCR), hosted at the Facultad de Microbiología, Universidad de Costa Rica, has re-emerged and it is our hope that it will have the standards of quality to assure that it will become the national depository of helminths in the country.