Decay indices for evaluating wood decomposition activity

The goal of the current study was to evaluate the efficiency of Norway spruce wood decomposition by the saprotrophic fungus Phlebiopsis gigantea (Fr.) Jülich. We identified the following indices as reliable measures of wood decay: decay acceleration index (DAI), final decay index (FD), and decay intensity index (DI). DAI was used to assess acceleration and deceleration of spruce wood loss, FD to estimate the final wood decay, and DI to evaluate the ability of the fungus to decompose wood, taking into consideration changes in mycelial activity over time. We tested the hypothesis that the wood decay activity of any fungus can be evaluated more objectively when: (i) several isolates of the tested fungus are assessed simultaneously, (ii) tests are performed for at least two time-points, and (iii) samples vary in wood density. Allowing a three-month period for wood decomposition was inadequate for reliable assessment of the wood decay ability of P. gigantea. Conversely, six months after inoculation, the tested isolates showed significant differences in their ability to generate dry wood loss, which depended on wood density. In view of these results, the DAI, FD, and DI indices are practical tools for assessing fungal activity to predict wood loss.     

Spruce wood degradation by Pleurotus abieticola in comparison with Phlebiopsis gigantea and Heterobasidion parviporum: in vitro experiments with isolates

The objective of this study was to evaluate the in vitro mycelium growth of Pleurotus abieticola and its competitive ability to decompose sapwood and heartwood wood, as compared to the activity of Phlebiopsis gigantea and Heterobasidion parviporum. Over the last several decades, P. gigantea has routinely been used for biocontrol of the conifer pathogen Heterobasidion annosum s.l.; however, its protective effect on Norway spruce stands was recently demonstrated to be not satisfactory. P. abieticola was proposed instead, as a promising species that might successfully compete with H. parviporum. We investigated the growth of mycelium and the ability of P. abieticola isolates to decompose wood of Norway spruce, in the experiment with isolates of P. gigantea and H. parviporum. Heartwood was better decomposed than sapwood by the majority isolates used in the experiment. Linear growth of the investigated fungi showed a more rapid mycelium development for P. gigantea and H. parviporum, compared to that of P. abieticola. In dual cultures, H. parviporum was overgrown only by P. gigantea. All the tested isolates of P. abieticola showed weaker wood decomposition than those of P. gigantea and H. parviporum. Further study is required to better understand the role of P. abieticola for the protection of spruce stands.     

Characterisation of some Phlebiopsis gigantea isolates with respect to enzymatic activity and decay of Norway spruce wood

The activity of cellulase, peroxidase, phosphatase and dehydrogenase enzymes, together with the content of protocatechuic and vanillic acids, in samples of Norway spruce wood inoculated with 17 different isolates of Phlebiopsis gigantea was measured. The same isolates were used to compare decay activity in samples of Norway spruce wood after incubation for 3 and 6 months. Significant differences in enzyme activity and phenol production were found between aerial mycelium overgrowing the wood sample and the underlying wood. These differences indicated that the nature of the fungal mycelium appears to change depending on whether it is in contact with wood. After 6 months, highly extensive decomposition of the wood was shown by two British isolates. The results confirm a large difference in P. gigantea inoculum among isolates in natural conditions and reinforce the need for constant evaluation of the most active isolates to use in preparations for biocontrol: a problem for both users and registration bodies.     

The capacity in Heterobasidion annosum s.l. to resist overgrowth by the biocontrol agent Phlebiopsis gigantea is a heritable trait

The necrotrophic pathogen Heterobasidion annosum sensu lato (Fr.) Bref. causes severe root rot on coniferous trees in the boreal and temperate forests. The annual economic losses caused by this fungus in Europe are estimated to at least 790 million €. In managed forests, the major route of infection is via stump surfaces from which the H. annosum s.l. grows through the roots and attacks adjacent healthy trees. A biocontrol method to reduce H. annosum s.l. infection is to apply the wood degrading fungus Phlebiopsis gigantea in a spore solution (Rotstop) directly on the freshly cut stumps immediately after cutting. We investigated the potential risk for a build-up in the capacity of H. annosum s.l. to resist overgrowth by P. gigantea. Wood blocks of Picea abies, precolonized with the two fungal species, were juxtaposed on top of agar and the overgrowth of the P. gigantea strain (Rotstop) on the H. annosum s.l. was measured periodically. We found a natural variation in Heterobasidion parviporum to resist overgrowth by P. gigantea. There was no difference between homo- and heterokaryotic strains. In a mapping population of 91 progenies from a H. annosum hybrid strain we were able to identify one quantitative trait locus (QTL) which controls the examined resistance capacity. We estimated the broad sense heritability to 0.336 for the capacity to resist the P. gigantea overgrowth. We conclude that there exists a theoretical risk for resistance build-up in the H. annosum s.l. population towards its biological control agent P. gigantea.     

When does dead wood turn into a substrate for spruce replacement?

Question: How many years must elapse for freshly fallen Picea abies stems to be transformed into a substrate for P. abies recruitment? Location: Natural sub‐alpine spruce forest, 1200–1300 m a.s.l., western Carpathians, Poland. Methods: Coarse woody debris (CWD) was measured on nine plots with a total area of 4.3 ha. All individuals of P. abies regeneration growing on dead wood were counted and their age was estimated. Decay rate of logs was determined using dendrochronological cross‐dating of samples from logs in different decay stages. Results: Although CWD covered only 4% of the forest floor, 43% of the saplings were growing on decaying logs and stumps. The highest abundance of P. abies recruitment occurs on logs 30–60 years after tree death, when wood is in decay stages no. 4–7 (on an 8 degree decay scale). However, much earlier colonization is possible. The first seedlings may germinate on a log during the second decade after tree death and survive for decades. Their slow growth is possibly due to the gradual progressive decomposition of wood. Conclusions: This study confirms the importance of decaying wood for P. abies recruitment. The decaying logs exhibit continuous and favourable conditions for the germination of P. abies seeds throughout their decay process. Logs, irrespective of their decay stage and age, are colonized by young seedlings. This recruitment bank is constantly renewed.     

Fungal decomposition of woody debris of Castanopsis sieboldii in a subtropical old-growth forest

Fungi, especially basidiomycetes, are the primary agents of woody debris decomposition in terrestrial forest ecosystems. However, quantitative data regarding the abundance and decay activity of wood-inhabiting fungi are lacking, especially for tropical and subtropical areas. This study demonstrates the dynamics of decay columns of wood-inhabiting fungi within decaying woody debris of Castanopsis sieboldii and the wood decay activities of those fungi in a subtropical natural forest. Among six basidiomycetes and two ascomycetes observed as sporocarps on fallen boles of C. sieboldii, Microporus affinis was most abundantly observed in terms of frequency of sporocarps and as percentage area of decay columns within cross-sections of boles, especially those in the early stages of decomposition. In decay columns of M. affinis, both acid-unhydrolyzable residue (AUR) and holocellulose decayed simultaneously, and wood relative density decreased to 45.8% of that of fresh C. sieboldii wood. A pure culture decay test under laboratory conditions showed that M. affinis was a strong decomposer of AUR and holocellulose. These results suggest that M. affinis has a central role in lignocellulose decomposition of wood of C. sieboldii in the early stages of decomposition.     

Further Observations on Fungi Inhabiting Pine Stumps

Growth-rates, both on malt agar and in stump wood, of earlystump colonizers such as Fomes annosus, Pemophora gigantea,Stereum sanguinolentum, and Leptographium lundbergii are higherthan those of later-colonizing agarics. The initial invasionof stump roots usually proceeds via the stump body by fungiwhich infect the cut surface. Although stumps may dry out appreciably shortly after felling,in later stages of decay the moisture content of the wood oftenincreases considerably. Stump decomposition is associated witha succession of decay fungi, the ‘Peniophora’, ‘Hypholoma’,and ‘Tricholoma’ stages being distinguished. Severalphycomycetes and fungi imperfecti colonize decayed, but notfresh, stump wood. P. gigantea is shown to be a vigorous competitor of F. annosusfor initial colonization of stumps: it may also replace F.annosus in stumps. Gliocladium viride and Trichoderma viridecompete with wood-rotting basidiomycetes and sometimes replacethem in very decayed wood.     

The effects of wood decay type on the growth of bryophyte gametophytes

Deadwood is an important habitat for bryophytes in boreal and subalpine forests. The type of decay in wood (white, brown, and soft rot) caused by fungal colonizers has been revealed to affect bryophyte communities. However, little is known about the effects of decay type on the growth of bryophytes. We tested the effect of wood decay type on gametophyte growth for two common bryophyte species, Scapania bolanderi Austin and Pleurozium schreberi (Brid.) Mitt., which dominate the logs in subalpine coniferous forest on Mt. Ontake, in central Honshu, Japan. We used pot culture experiments in an open-sky nursery field. After eight months of cultivation, the growth of S. bolanderi was larger on brown rot wood than white rot wood, but the growth of P. schreberi was not. Mixed cultures of the two species also showed greater growth on brown rot wood. However, growth of S. bolanderi was significantly smaller than P. schreberi in mixed culture. These results suggest that brown rot wood enhances growth of S. bolanderi, but growth may be reduced under competition from P. schreberi. The results are in agreement with the field observation that brown rot wood has a positive association with S. bolanderi coverage on deadwood.     

Virus Community Dynamics in the Conifer Pathogenic Fungus Heterobasidion parviporum Following an Artificial Introduction of a Partitivirus

Viruses infecting the conifer pathogenic fungus Heterobasidion annosum sensu lato are intracellular and spread via anastomosis contacts. In the laboratory, these viruses transmit readily even between somatically incompatible isolates, but their dispersal capacity in natural conditions has not been previously studied. We introduced a mycovirus to a heavily diseased forest site by inoculating Norway spruce stumps with heartrot decay using a mycelial suspension of Heterobasidion parviporum strain RT3.49C hosting the partitivirus strain HetRV4-pa1. The Heterobasidion population at the sample plot was screened for mycoviruses prior to and after the inoculation. Based on sequence analysis, the resident H. parviporum strains harbored six different strains of the virus species Heterobasidion RNA virus 6 (HetRV6) and one strain of HetRV4 prior to the inoculation. After three growth seasons, the inoculated H. parviporum host strain was not detected, but the introduced virus had infected two resident H. parviporum genets. The presence of a preexisting HetRV6 infection did not hinder spread of the introduced partitivirus but resulted in coinfections instead. The resident HetRV6 virus population seemed to be highly stable during the incubation period, while the single indigenous HetRV4 infection was not detected after the inoculation. In laboratory infection experiments, the introduced virus could be transmitted successfully into all of the resident H. parviporum genets. This study shows for the first time transmission of a Heterobasidion virus between somatically incompatible hosts in natural conditions.     

Phlebiopsis gigantea and associated viruses survive passing through the digestive tract of Hylobius abietis

Phlebiopsis gigantea (Fr.) Jül. is one of the most common fungal species in coniferous forests and commonly used as a biological control agent to prevent aerial infections of conifers by Heterobasidion fungi. We used feeding experiments to examine whether Hylobius abietis L. (Coleoptera: Curculionidae) could serve as a vector for P. gigantea and associated viruses by disseminating the fungus in its faecal pellets. Two different P. gigantea strains were used in the experiments: the virus-free Rotsop biocontrol strain and P. gigantea 93073 infected with the virus strain PgLV-1. The Rotstop strain showed 100% viability during insect feeding, while the viability of the virus-infected strain 93073 was only 35%. Virus persistence was 100% during the passage of the host fungus through the alimentary tract. Based on growth experiments using virus-infected and virus-free strains obtained by hyphal tip or oidial isolation, the presence of PgLV-1 did not significantly affect the growth rate of the host fungus.     

Microsatellite markers for the wood decay fungus Phlebiopsis gigantea

Nine polymorphic microsatellite markers were developed for the wood-decay basidiomycete Phlebiopsis gigantea, which is used commercially as a biocontrol agent for annosum root disease on conifers. Microsatellite sequences were isolated from repeat-enriched genomic libraries. Primers flanking these sequences were screened on P. gigantea isolates from Europe and North America. The number of alleles per locus ranged from 5 to 15, and gene diversity ranged from 0.72 to 0.90. These markers should be useful for studies of P. gigantea natural population structure and for making predictions about the impact of P. gigantea application in conifer forests.     

Does temperature regime govern the establishment of <Emphasis Type="Italic">Heterobasidion annosum</Emphasis> in Scandinavia?

We explored the reasons underlying the biogeographic distribution patterns of the economically important, wood-rotting basidiomycete Heterobasidion annosum in Sweden. Despite the commonness of suitable host trees, Heterobasidion annosum has not been recorded in the north of Sweden, whereas its relative, H. parviporum, is present throughout the country. To test the hypothesis that H. annosum has not spread to the north because of the effect of climate, mainly differences in the general temperature regime, we inoculated Norway spruce stumps and standing trees with H. annosum and H. parviporum at six field sites, three in the south and three in the north of Sweden. Three strains of both species were used in random combinations, so that each selected stump and tree was inoculated with both species at the same time. At 2 and 10 months after the inoculations, we compared the frequencies of detection of H. annosum and H. parviporum colonies at different distances from inoculation points in the stumps and in trees. The H. annosum colonies were detected only infrequently on disks cut from the inoculated stumps (0–4% of re-isolations) in both areas, whereas H. parviporum was detected much more frequently (26–47% of re-isolations). In standing trees, colonies belonging to H. annosum could be detected up to 210 cm (south) and 80 cm (north) and those belonging to H. parviporum up to 210 cm (south) and 140 cm (north) above the inoculation points. Our results suggest that difference in temperature regime does not provide an explanation for the distribution limit of H. annosum.     

Decomposition of dominant submerged macrophytes: implications for nutrient release in Myall Lake, NSW, Australia

Breakdown and nutrient dynamics of submerged macrophytes were studied in Myall Lake, Australia. Mass loss of Myriophyllum sulsagineum was the lowest (64.90%) among the studied macrophytes during the 322 days followed by charophytes (60.79%), whereas Najas marina and Vallisneria gigantea lost 91.15 and 86.02% of their respective initial mass during that time. The overall exponential breakdown rates of Najas marina and Vallisneria gigantea were similar, with k-values of 0.24 and 0.23 day⁻¹, respectively. These rates were significantly higher than the break down rates of charophytes (0.007 day⁻¹) and M. sulsagineum (0.008 day⁻¹). During growth phase, water column depicted lower nutrient concentrations while during decay period, significant increase in water column nutrients resulted. Release of nutrients from decomposing macrophytes and incorporation of these nutrients into sedimentary phase as well as uptake of nutrients by the growing macrophytes, can present a considerable cycling pathway of nutrients in Myall lake system. The results of this study suggest that different submerged macrophytes may differ appreciably in quality and may exhibit different decomposition rates, patterns and nutrient dynamics in aquatic ecosystems in general, and Myall lakes in particular.     

Biological control of wood decay in an open tropical environment with Penicillium sp. and Trichoderma viride

The ability of Penicillium sp. and Trichoderma viride to retard the decay of obeche (Triplochiton scleroxylon) wood in the field for 11 months (January–November) covering dry and wet seasons in a tropical environment was investigated using the ‘graveyard’ method. Inoculation of stakes with Gloeophyllum sp. or G. sepiarium (decay fungi) 24 h after treatment with T. viride or Penicillium sp. in January (dry season) did not increase decay after 11 months. Total inhibition of the decay fungi was indicated since the low weight losses of stakes was not markedly different from losses in control stakes biologically treated but not exposed to decay fungi. Inhibition of the activities of other unidentified field fungi was also indicated because weight losses were greater in uninoculated and untreated stakes. However, decay occurred in stakes biologically treated in January but later exposed to decay fungi in May, after the dry season. A repeat application of T. viride treatment in May, to stakes earlier treated in January, markedly reduced decay following exposure to decay fungi in September (wet season). A similar Penicillium sp. application was not as effective as T. viride application because unlike the T. viride protected stakes, decay was greater in stakes twice protected with Penicillium sp. but not exposed to decay fungi. The results indicate that repeated application of biocontrol agents may be important for controlling wood decay following the adverse effect of the dry season.     

Screening of New Zealand Native White-Rot Isolates for PCP Degradation

From a pool of 367 white-rot fungi native to New Zealand (over 77 genera), isolates were screened for their bioremediation potential of pentachlorophenol (PCP). Fungi were tested for their ligninolytic activity (Poly R-478, 367 isolates; wood decay, 235 isolates), tolerance to temperature (261 isolates), resistance to PCP (253 isolates), and PCP degradation potential plus laccase expression (20 isolates). Of the isolates tested, 26% showed a discolouration in the polymeric dye assay, but all caused wood decay (5 to 169 mm) on willow cuttings. In the temperature tolerance tests, all isolates survived incubation from 0 to 30°C, however, 18% and 40% did not survive incubation at 35 and 40°C, respectively. In the PCP resistance tests, 23 isolates (9%) were able to grow on 200 mg/L PCP amended agar, of which 20 isolates were further studied for laccase expression and PCP degradation in vitro. All 20 isolates reduced (P < 0.05) PCP in the liquid fraction in the absence or presence of laccase and five of the isolates produced no detectable levels of PCP. None of the screening tests were predictive for PCP degradation in vitro. The requirements to build a database to select a superior white-rot fungal isolates for bioremediation is discussed.     

Wood decomposing abilities of diverse lignicolous fungi on nondecayed and decayed beech wood

We tested the decay abilities of 28 isolates from 28 lignicolous fungal species (Basidiomycota, Ascomycota and Zygomycota) with the pure culture test. We used beech wood powder in varying moisture conditions and decay stages (nondecayed, intermediately decayed and well decayed) as substrates. The weight loss in wood powder was -0.2-17.8%. Five isolates of Basidiomycota (Bjerkandera adusta, Mycena haematopus, Omphalotus guepiniformis, Trametes hirsuta, Trametes versicolor) caused high weight losses in nondecayed wood. We detected significant effects of decay stage on weight loss in wood in most isolates tested, whereas moisture content rarely had an effect on weight loss. Among Basidiomycota and Xylariaceae in Ascomycota weight loss was greater for nondecayed wood than for intermediately and well decayed wood. In contrast four isolates in Ascomycota (Scytalidium lignicola, Trichoderma hamatum, T. harzianum, T. koningii) caused substantial weight loss in intermediately and well decayed wood, although they rarely caused weight loss in nondecayed wood. Zygomycota caused low weight loss in wood. Wood decay stages also affected decomposition of wood chemical components. Acid-unhydrolyzable residue (AUR) decomposition was reduced, whereas holocellulose decomposition was stimulated by some strains of Basidiomycota and Ascomycota in well decayed wood. T. harzianum in particular caused significant weight loss of holocellulose in well decayed wood, although this fungus caused negligible weight loss of both AUR and holocellulose in nondecayed wood. We discuss these changes in the decay patterns of AUR and holocellulose with varying wood decay stages in relation to the role of fungal decomposition of woody debris in forests.     

Decomposition of standing dead trees in the southern Appalachian Mountains

Summary Decomposition of standing dead trees that were killed by fire was examined for 10 species in the Great Smoky Mountains National Park. The decrease in wood density as fire age increased was used to estimate decomposition rates. Quercus prinus had the fastest decay rate (11% yr^-1) while Pinus virginiana had the slowest decay rate (3.6% yr^-1) for standing dead wood. Decay rates were intermediate between those reported in western USA and tropics for wood.     

Compared cycling in a soil-plant system of pea and barley residue nitrogen

Field experiments were carried out on a temperate soil to determine the decline rate, the stabilization in soil organic matter and the plant uptake of N from ¹⁵N-labelled crop residues. The fate of N from field pea (Pisum sativum L.) and spring barley (Hordeum vulgare L.) residues was followed in unplanted and planted plots and related to their chemical composition. In the top 10 cm of unplanted plots, inorganic N was immobilized after barley residue incorporation, whereas the inorganic N pool was increased during the initial 30 days after incorporation (DAI) of pea residues. Initial net mineralization of N was highly correlated to the concentrations of soluble C and N and the lignin: N ratio of residues. The contribution of residue-derived N to the inorganic N pool was at its maximum 30 DAI (10–55%) and declined to on average 5% after 3 years of decomposition.Residual organic labelled N in the top 10 cm soil declined rapidly during the initial 86 DAI for all residue types. Leaching of soluble organic materials may have contributed to this decline. At 216 DAI 72, 59 and 45% of the barley, mature pea and green pea residue N, respectively, were present in organic N-forms in the topsoil. During the 1–3 year period, residual organic labelled N from different residues declined at similar rates, mean decay constant: 0.18 yr^-1. After 3 years, 45% of the barley and on average 32% of the pea residue N were present as soil organic N. The proportion of residue N remaining in the soil after 3 years of decomposition was most strongly correlated with the total and soluble N concentrations in the residue. The ratio (% inorganic N derived from residues): (% organic N derived from residues) was used as a measure of the rate residue N stabilization. From initial values of 3–7 the ratios declined to on average 1.9 and 1.6 after 2 and 3 yrs, respectively, indicating that a major part of the residue N was stabilized after 2 years of decomposition. Even though the largest proportion of residue N stabilized after 3 years was found for barley, the largest amount of residue N stabilized was found with incorporation of pea residues, since much more N was incorporated with these residues.In planted plots and after one year of decomposition, 7% of the pea and 5% of the barley residue N were recovered in perennial ryegrass (Lolium perenne L.) shoots. After 2 years the cumulative recovery of residue N in ryegrass shoots and roots was 14% for pea and 15% for barley residue N. The total uptake of non-labelled soil N after 2 years of growth was similar in the two residue treatments, but the amount of soil N taken up in each growth period varied between the treatments, apparently because the soil N immobilized during initial decomposition of residues was remineralized later in the barley than in the pea residue treatment. Balances were established for the amounts of barley and mature pea residue N remaining in the 0–10 cm soil layer and taken up in ryegrass after 2 years of decomposition. About 24% of the barley and 35% of the pea residue N were unaccounted for. Since these apparent losses are comparable to almost twice the amounts of pea and barley residue N taken up by the perennial ryegrass crop, there seems to be a potential for improved crop residue management in order to conserve nutrients in the soil-plant system.     

Carbon and nitrogen acquisition strategies by wood decay fungi influence their isotopic signatures in Picea abies forests

We examined whether sporocarp carbon and nitrogen isotope ratios (δ¹³C and δ¹⁵N values) reflected different functional strategies in 15 species of wood decay fungi. In Finnish Picea abies forests, we compared sporocarp δ¹³C and δ¹⁵N against log diameter, proximity to ground, and three wood decay types, specifically brown rot, nonselective white rot, and selective white rot (targeting hemicellulose and lignin preferentially). In regression analysis (adjusted r² = 0.576), species accounted for 31% of variability in δ¹³C, with factors influencing wood δ¹³C accounting for the remainder. Brown rot fungi and three white rot fungi that selectively attacked hemicellulose (Heterobasidion parviporum, Phellopilus nigrolimitatus, and Trichaptum abietinum) were higher in δ¹³C than nonselective white rot fungi. This was attributed to greater assimilation of ¹³C-enriched pentoses from hemicellulose by these fungi. The pathogenic white rot fungus Heterobasidion parviporum had higher δ¹⁵N with proximity to ground and increasing log diameter. This suggested that ¹⁵N-enriched soil N contributed to decomposing logs and that Heterobasidion growing from a bigger resource base had increased access to soil N. These isotopic patterns accordingly reflected both functional diversity of wood decay fungi and site-specific factors.