The assessment of water quality in the Artois-Picardie water basin (France) by the use of diatom indices

The performance of six diatom indices to evaluate water quality has been studied in the Artois-Picardie water basin. Results show that all of them satisfactorily assess organic pollution which is the main phenomenon responsible for the degradation of water quality throughout the year. However, only the Specific Pollution Sensitivity Index (SPI), the Generic Diatom Index (GDI) and the Commission of Economical Community Index (CEC) show significant correlations with the ionic strength (expressed by chlorides, sulphates and conductivity) and eutrophication (expressed by chlorophyll and nitrates). Diatom indices do not integrate chemical parameters in the same way. Best correlations are obtained through simultaneous or average chemical analyses whereas for other parameters, best correlations are noted with chemical analyses carried out just before diatom sampling. Tests performed on different chemical data sets show that it is possible to make a realistic estimation of water quality during the summer in the Artois-Picardie water basin by using SPI in September.     

Use of benthic diatom communities to evaluate water quality in rivers of southern Poland

Biological and chemical data were processed to estimate trophic stage and degree of pollution in several streams and rivers in southern Poland. The majority were eutrophic and some of them heavily polluted; only a few were oligo-mesotrophic. The differences in the water quality of the rivers were reflected by different types of diatom community and also by the values for some diatom indices, which were calculated using the latest version of the 'Omnidia' database software. Except for the Sládeček's index, all diatom indices correlated significantly with organic load (COD), oxygen concentration, conductivity and most of the measured ions. Some indices showed a significant negative correlation with trophic level (expressed by NH₄-N and PO₄-P). In general, IPS (Specific Pollution Sensitivity Index) and GDI (Generic Diatom Index) indices gave the best results. Among the investigated diatom communities, only a few taxa indicated oligo-mesotrophy and oligo-β-mesosaprobity. Most of the sites were characterised by a greater relative contribution of eutraphent and tolerant ones as well as α-mesosaprobic and polysaprobic diatoms. This study suggests that the structure of benthic diatom communities and diatom indices, especially GDI, can be applied for monitoring rivers in Poland. This revised version was published online in June 2006 with corrections to the Cover Date.     

Are diatoms good integrators of temporal variability in stream water quality?

1. Although diatoms have been used for many decades for river monitoring around the world, studies showing evidence that diatoms integrate temporal variability in water chemistry are scarce. 2. The purpose of this study was to evaluate the response of the Eastern Canadian Diatom Index (IDEC: Indice Diatomées de l’Est du Canada) with respect to temporal water chemistry variability using three different spatio‐temporal data sets. 3. Along a large phosphorus gradient, the IDEC was highly correlated with averaged water chemistry data. Along within‐stream phosphorus gradients, the IDEC integrated phosphorus over various periods of time, depending on the trophic status of the site studied (Boyer, Nicolet or Ste. Anne river) and variability in nutrient concentration. 4. In the Ste. Anne River, where nutrient concentrations were low and generally stable, an input of phosphorus induced a rapid change in diatom community structure and IDEC value within the following week. In the mesotrophic Nicolet River, the observed integration period was approximately 2 weeks. Diatom communities in the eutrophic Boyer River appeared to be adapted to frequent and significant fluctuations in nutrient concentrations. In this system, the IDEC therefore showed a slower response to short term fluctuations and integrated nutrient concentrations over a period of 5 weeks. 5. Our results suggest that the integration period varies as a function of trophic status and nutrient concentration variability in the streams. Oligotrophic streams are more sensitive to nutrient variations and their diatom communities are directly altered by nutrient increase, while diatom communities of eutrophic rivers are less sensitive to nutrient fluctuations and major variations take a longer time to be integrated into index values. 6. The longer integration period in the eutrophic environment may be attributed to the complexity of the diatom community. The results from this study showed that the diversity and evenness of the communities increased with trophic status.     

VARIATION IN DIATOM COMMUNITY STRUCTURE AMONG HABITATS IN SANDY STREAMS1

Community structure of benthic diatoms in two sandy streams was studied for two summers to assess differences in abundances and species composition among habitats and between years and streams. The greatest differences in abundances (cells·cm^?2) were lower abundances on rocks than on sand, whether the sand was clean or covered with flocculent organic material. Relatively little variation in abundances occurred between years and streams. Species composition of diatom communities varied more among habitats and between streams than from year to year. Species composition was most unique in floc-covered sand when communities in clean and floc-covered sand, rock, plant, and plankton were compared. Diatom species composition in these sandy streams was most similar on sand and rocks.     

Assessment of the effectiveness of best management practices for streams draining agricultural landscapes using diatoms and macroinvertebrates

In this study, a bioassessment was conducted to determine the effectiveness of best management practices (BMPs) implemented in farms in the Upper Delaware River watershed, NY (USA). Diatom and macroinvertebrate communities were analyzed across 17 low-order streams, designated as reference, BMP, or non-BMP. Streams lacking improvements (non-BMP) had significantly greater specific conductance, pH, TDP, NH₄ ⁺-N, and NO₃ ⁻-N than did reference streams. Diatom model affinity (DMA) values were significantly greater in reference and BMP streams than in non-BMP streams; non-BMP streams bordered on a “severely impacted” rating. The Trophic Diatom Index (TDI) varied two-fold among stream classes, with non-BMP > BMP > reference. TDI and DMA values were highly correlated, and both varied significantly with conductance, TDP, NH₄ ⁺-N, and NO₃ ⁻-N. Macroinvertebrate taxa, EPT richness, and Simpson’s diversity did not differ significantly among stream classes. Macroinvertebrate metrics (HBI, Bioassessment Profile, Percent Model Affinity) varied by stream class, but none indicated greater water quality in BMP sites. Nonetheless, each correlated significantly with conductance and TDP in the directions predicted by each model. Our data suggest that diatoms are more sensitive to moderate increases in nutrients, conductivity, and pH in high-gradient agricultural streams, and may be more useful in assessing stream management practices.     

Choice of biota in stream assessment and monitoring programs in tropical streams: A comparison of diatoms,macroinvertebrates and fish

The objective of this study was to compare the responses of diatoms, macroinvertebrates and fish to agriculture, urbanization and mining in the Manyame River Basin. Water quality sampling and benthic diatom, macroinvertebrate and fish community data were collected in April (end of the rain season) and September (dry season) 2013 at 44 sampling stations spread out across three land-use categories: commercial agricultural, communal agricultural and urban-mining areas. Commercial agricultural areas were relatively pristine as they were characterized by mature deciduous riparian forest strips which acted as riparian buffers thus protecting water resources from nonpoint source pollution. In communal agricultural areas a combination of poor agricultural practices (stream bank cultivation, overgrazing, soil erosions) and high human population densities had negative effects on water quality of streams draining these areas. Streams in urban-mining areas were highly stressed, being impacted primarily by physical habitat degradation and both point and nonpoint sources of pollution. A suite of environmental variables that varied with land-use pattern was assessed to find the combination of variables that best explained patterns of biota community composition. Community metrics i.e. the Trophic Diatom Index (TDI) based on diatoms, the South African Scoring system version 5 (SASS 5) based on macroinvertebrates and the Fish Assemblage Integrity Index (FAII) were used to determine the ecological status of study streams in relation to human-induced stressors. Data were also subjected to multivariate statistical techniques; canonical correspondence analysis (CCA), mantel test and cluster analysis to determine environmental gradients along which the diatom, macroinvertebrate and fish assemblages were distributed as well as to elucidate hypothesized differences in response to stressors among communities per land-use type. Using CCA, we assessed the individual importance of a set of environmental variables on each biotic community structure. ANOVA, showed a significant difference (p < 0.05) in physical and chemical variables among commercial agricultural, communal agricultural and urban-mining sampling stations with no significant differences (p > 0.05) between the 2 sampling periods. Based on CCAs carried out using individual variables, the strengths of relationships between diatoms and macroinvertebrates was generally high for nutrient levels, organic and metal pollution and other variables. However, fish assemblages showed a relatively low association with all water quality variables in the study; this might be explained by the high abundance of omnivores and air breathers which are able to tolerate a variety of environmental conditions. These patterns were also confirmed by the mantel test as well as the other CCAs carried out to investigate the simultaneous effects of environmental variables. These findings indicate that diatoms are more powerful indicators in accessing ecological stream/river quality and have potential for application in routine monitoring programs in tropical streams.     

Diatom community response to an acid mine drainage gradient

Acid mine drainage (AMD) is a significant environmental issue worldwide. On the West Coast of the South Island, New Zealand, many AMD-affected streams occur within close proximity to naturally acidic streams, enabling us to compare the response of communities in naturally and anthropogenic acidified systems. We investigated epiphytic diatom communities in 39 streams along an AMD gradient that included naturally acidic and circum-neutral reference streams. There was a wide range in taxonomic richness in reference streams and those moderately impacted by AMD (8–33 taxa). Taxonomic richness was greatly reduced in severely impacted streams (1–5 taxa) at a threshold of pH 3.4 and was dominated by Pinnularia cf. acidophila (69–100% relative abundance). Community composition differed between circum-neutral reference streams and moderately and severely impacted streams. However, naturally acidic and moderately impacted streams had similar diatom communities primarily composed of Eunotia and Frustulia species. Our results indicate that diatom communities are strongly structured by pH and able to tolerate moderate conductivity and metal concentrations. This is a challenge for researchers and water managers attempting to incorporate diatoms into AMD monitoring in regions with naturally acidic streams.     

Comparative study of monitoring South-Finnish rivers and streams using macroinvertebrate and benthic diatom community structure

In southern Finland, most of the rivers are turbid and suffer from eutrophication and leaching of suspended solids from diffuse sources. We first related benthic diatom and macroinvertebrate structure to environmental factors using direct ordination. Second, benthic diatoms and macroinvertebrates were simultaneously sampled in several South-Finnish rivers and streams to compare two monitoring methods. The study sites constituted of some large, moderately nutrient rich rivers and some smaller, less eutrophic streams situated on the south coast of Finland. Diatom species distribution was most affected by conductivity, total P and latitude. Species distribution of macroinvertebrates was mostly related to channel width, conductivity and pH. For diatoms, separation of community structure between sampling stations was clear, but corresponding macroinvertebrate communities were more similar to each other. Correlation between diatom and macroinvertebrate pollution indices was rather low and insignificant (r = 0.28). As a whole, variation of macroinvertebrate index values (CV = 4.7%) among replicate samples was slightly lower than for diatom index (CV = 6.0%). On the contrary, community similarity between the replicate samples was slightly lower among macroinvertebrates (r = 0.770) due probably to their larger local scale spatial variation, sampling of more habitats and lower density compared to diatoms (r = 0.874). In conclusion, multiple pressures affecting the river ecosystems at different spatial and temporal scales should lead to choosing more than one biological monitoring method with clearly identifiable responses.     

BIOGEOGRAPHY OF BATRACHOSPERMUM HELMENTOSUM (BATRACHOSPERMALES, RHODOPHYTA) IN NORTH AMERICA USING MOLECULAR AND MORPHOLOGICAL DATA

Over the course of 3 years (1997–1999), 72 stream sites were sampled for epilithic diatom communities. The analysis of these samples has led to the identification of over 325 species of diatoms. In addition to sampling the diatom community, selected physical and chemical parameters were recorded from each stream reach. These parameters included pH, specific conductance, current velocity, SRP, nitrate, silica, and total alkalinity. Canonical Correspondence Analysis (CCA) was used to identify influential environmental parameters and to assess the response of the diatom community to prominent anthropogenic inputs in the region (i.e. coal mine drainage, eutrophication). The initial analyses indicate that pH was the most influential environmental parameter along the first CCA axis. This shift was not unexpected, as acid mine drainage (AMD) in the region leads to a wide range of pH values (2.8–7.93). The highly acidic sites were characterized by species of the genus Eunotia (specifically E. exigua and E. steineckei ), Frustulia rhomboides , and Pinnularia subcapitata. Furthermore, Achnanthidium minutissimum was the most widely distributed of the diatom species encountered, being found at 94% of the sites sampled. Streams that fluctuated between acidic and circumneutral pH (termed "teeter-totter") had greater abundances of Brachysira vitrea than other streams in this survey. Further implications for the use of these diatom communities as biomonitoring tools and the distribution of assemblages within the Western Allegheny Plateau will be discussed.     

Diatom communities along stream longitudinal gradients

1. Summer diatom communities on artificial substrates were sampled weekly for a month in three first- to sixth-order tributaries of the Kentucky River to determine how community structure varied with stream size. 2. Diatom cell abundances were generally higher in the headwaters. Species diversity increased in a downstream direction in two of the streams, and in an upstream direction in the third. However, diversity in general seemed more closely related to current regimes than to stream size per se, with highest species diversity at intermediate current velocities. 3. Variation in diatom accumulation rates was greater in downstream communities than in the headwater assemblages of two streams, suggesting that downstream communities may experience greater fluctuations in abundance, at least under low-flow conditions. 4. Patterns of species distributions suggested a relationship between morphological growth forms (guilds) and stream size, as well as the influence of current. Achnanthes spp., Eunotia spp., erect, and stalked taxa were more commonly associated with headwater assemblages. Filamentous and centric diatoms occurred with greater frequency downstream.     

Land-use influence on stream water quality and diatom communities in Victoria, Australia: a response to secondary salinization

Diatom communities were analyzed in 39 streams located in drainages with varied land-use practices throughout Victoria, Australia. Thirteen water quality parameters were also measured in each stream. Most streams had low HCO₃ ^1- concentrations (low buffering capacity) with >90% of the waters dominated by Na¹⁺ and Cl^1-. Phosphate concentrations ranged from 0.003 to 2.0 mg/L. Diatom communities (245 taxa) were strongly correlated with land-use practices, i.e. historic clear cutting, and secondary salinization. Streams influenced by heavy irrigation practices and dryland farming had reduced species diversity and richness compared to systems with low to moderate land use. A nonmetric multidimensional ordination of diatom communities in the 39 streams was conducted. An ANOSIM on the ordination showed that diatom communities in upland watersheds with native forest canopies and low salinization, lowland streams in watersheds with cleared forest canopies, moderate agricultural utilization and salinization, and lowland streams in areas with high irrigation and salinization were all significantly different (p<0.001) from one another. Community ordination techniques showed that both specific conductance (salinity) and phosphorus interacted to determine stream diatom community structure in drainages with high secondary salinization. Drainages with low to moderate agricultural activity and low nutrients, but with a wide range of salinities showed strong associations with the diatom taxa Amphora coffeaeformis, Cymbella pusilla and Entomoneis paludosa, whereas, streams in regions with heavy agricultural practices and high phosphorus had Bacillaria paradoxa, Nitzschia hungarica, N. frustulum and Aulacoseira granulata as numerically important diatoms. In contrast, Rhizosolenia eriensis, Frustulia rhomboides, Eunotia pectinatus and Tabellaria flocculosa were strongly associated with upland streams with fast current, relatively low O-PO₄ ^3- concentrations, low pH, low salinity, and low temperature. In general, the diatom communities in saline streams (3 mS) were similar to those previously reported in saline lakes in Victoria.     

Beta diversity of stream diatoms at two hierarchical spatial scales: implications for biomonitoring

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Land use impacts on stream community composition and concordance along a natural stress gradient

Most ecosystems are subjected to multiple stressors derived from natural and anthropogenic sources and community responses to human disturbance in naturally stressful habitats may differ from those in more benign habitats. We examined the influence of a natural (geology-driven acidity) vs. human-induced stress (land drainage) and their interaction on the composition and concordance of stream diatom, bryophyte and invertebrate communities. To account for differing drainage impacts in circumneutral (sedimentation) and naturally acid (reduced pH and increased metal concentrations) streams we investigated concordance in three groups of streams: reference (circumneutral and naturally acidic reference), circumneutral (reference and drained) and naturally acidic (reference and drained) streams. We expected diatoms to respond more strongly to anthropogenic acidification and more weakly to sedimentation compared to bryophytes and invertebrates. We expected overall strong concordance among the three taxonomic groups, but especially so in reference streams. All three organism groups had distinct species composition in naturally acidic vs. circumneutral streams. Concordance between communities was overall strong, especially so in the reference streams. All groups responded to drainage disturbance in both types of streams. Invertebrates were slightly less responsive to increased acidification in the naturally acidic streams but were more affected by sedimentation in the circumneutral streams than were the other two groups. The natural stressor affected communities more than the anthropogenic stressors. Naturally stressed communities were affected by an anthropogenic stressor as much as those in more benign habitats, although the additional stressor was similar to the initial stress (further reduction of stream pH). Naturally acid streams may need special concern in bioassessment because models based on circumneutral reference sites will likely produce biased predictions for these streams.     

VARIATION IN BENTHIC DIATOM (BACILLARIOPHYCEAE) IMMIGRATION WITH HABITAT CHARACTERISTICS AND CELL MORPHOLOGY1

We studied the hypothesis that diatom immigration abilities are related to their fitness for colonizing stream substrates. Diatom abundances on artificial substrates exposed for 24 h (the measure of immigration rate) and abundances of stream plankton were determined in six habitats. Diatom immigration varied among habitats from 50–2500 cells·cm^?2·d^?1. Immigration rates decreased 10-fold with increases in current from 10 to 30 cm·s^?1 but changed little during a 40-d summer period. Immigration abilities of diatom taxa were characterized as ratios of either their abundances or relative abundances in immigration assemblages versus in the plankton. Immigration abilities varied over 100-fold among different species. Immigration of some species could be characterized as slower than others in different streams; however, variation in immigration abilities of other species among streams indicated that environment also affected immigration. Diurnal variation in abundance and species composition of the immigration pool (stream plankton) can be important in assessing immigration abilities. Immigration ability may affect benthic diatom fitness. Monoraphid diatoms had a lower probability of immigrating from the plankton than araphid diatoms.     

Ecological status of some Finnish rivers evaluated using benthic diatom communities

The applicability of some diatom methods to quality assessment of differenttypes of Finnish rivers was compared using dominant taxa of diatomcommunities and nutrient level estimations using Trophic Diatom Index(TDI) and a new Phosphorus Diatom Equation (PDE) [Tot. P_calc (g l^-1) = 39 – 0.278 ol-% – 0.117 olme-% – 0.346me-% – 0.006 meeu-% + 1.193 eu-%; n = 97; r² = 0.742;SE = 17.4]. The overall quality estimations were done by Index ofPollution Sensitivity (IPS) and by Generic Diatom Index (GDI); limit valuesfor quality classes are proposed.     

Demonstration of the Bzura River restoration using diatom indices

The quality of running waters is reflected in the composition of benthic diatom assemblages. The biological assessment of changes in the composition, and thus of changes in water quality, was carried out in the lowland mid-sized Bzura River, Central Poland, over the period of 30 years. The benthic diatom material consisted of samples collected in two investigation periods, in 1972 and in 2003–2004. The methods applied were three diatom indices, IPS — Specific Pollution Sensitivity Index, GDI — Genetic Diatom Index and TDI —Trophic Diatom Index, and the OMNIDIA computer program, which are commonly used in Europe. The aim of the study was demonstrating the process of restoration that occurred in the river. The Bzura was included to the most polluted ones in Poland till 1996. Since 1998 a gradual improvement in water quality has been observed, which is caused by a number of biological-technical measures, mostly a proper organization of sewage management in most cites located on the river. In 1972 the IPS classified Bzura water into Water Quality Class IV-V, while in 2003–2004 it reached much higher values, i.e. Class III–IV. On the basis of the GDI Class III was determined in the whole river in 2003–2004, while its values indicated Class III–IV in 1972. The trophic index, TDI attributed Bzura water to the eutrophic to hypereutrophic zone in 2003–2004, and to one degree better water, i.e. from the mesoeutrophic to eutrophic zone, in 1972.     

Assessing ecological status with diatoms DNA metabarcoding: Scaling-up on a WFD monitoring network (Mayotte island,France)

Diatoms are excellent ecological indicators of water quality because they are broadly distributed, they show high species diversity and they respond rapidly to human pressures. In Europe, the Water Framework Directive (WFD) gives the legal basis for the use of this indicator for water quality assessment and its management. Several quality indices, like the Specific Polluosensitivity Index (SPI), were developed to assess the ecological quality status of rivers based on diatom communities. It is based on morphological identifications and count of diatom species present in natural biofilms using a microscope. This methodology requires high taxonomic skills and several hours of analysis per sample as 400 individuals must be identified to species level. Since several years, a molecular approach based on DNA metabarcoding combined to High-Throughput Sequencing (HTS) is developed to characterize species assemblages in environmental samples which is potentially faster and cheaper. The ability of this approach to provide reliable diatom inventories has been demonstrated and its application to water quality assessment is currently being improved. Despite optimization of the DNA metabarcoding process with diatoms, few studies had yet extended it at the scale of a freshwater monitoring network and evaluated the reliability of its quality assessment compared to the classical morphological approach.In the present study we applied DNA metabarcoding to the river monitoring network of the tropical Island Mayotte. This island is a French département since 2011 and the WFD has to be applied. This offered the opportunity to scale up the comparison of molecular and morphological approaches and their ability to produce comparable community inventories and water quality assessments. Benthic diatoms were sampled following WFD standards in 45 river sites in 2014 and 2015 (80 samples). All samples were submitted in parallel to the molecular and the morphological approaches. DNA metabarcoding was carried out using Genelute DNA extraction method, rbcL DNA barcode and PGM sequencing, while microscopic counts were carried out for the classical methodology. Diatom community structures in terms of molecular (OTUs) and of morphological (species) were significantly correlated. However, only 13% of the species was shared by both approaches, with qualitative and quantitative variation due to i) the incompleteness of the reference library (82% of morphological species are not represented in the database), ii) limits in taxonomic knowledge and iii) biases in the estimation of relative abundances linked to diatom cell biovolume. However, ecological quality status assessed with the molecular and morphological SPI values were congruent, and little affected by sequencing depth. DNA metabarcoding of diatom communities allowed a reliable estimation of the quality status for most of the rivers at the scale of the full biomonitoring network of Mayotte Island.     

Sedimentary diatom concentrations and accumulation rates as predictors of lake trophic state

Diatom concentrations in surface sediments are positively correlated with limnetic chlorophyll a concentrations in Florida (USA) lakes. Using this relationship, I examine models that provide quantitative inferences for trophic state in historical applications.The best model predicts chlorophyll a trophic state index (TSI) values from log-transformed diatom concentrations and explains approximately half the variance in the dependent variable. Diatom accumulation rates are not better than sedimentary diatom concentrations as predictors of TSI. The entire diatom assemblage is as sensitive an indicator of TSI as are the planktonic diatoms alone. A model that considers the ecological preferences of specific taxa was found to be a better predictor than the model based on total diatom concentration.The sedimentary diatom concentration model provides a useful method for assessing historical changes in primary productivity, except in lakes where factors (e.g., silica limitation, blue-green bacterial inhibition) limited diatom production, or post-depositional changes removed sedimentary diatoms. TSI inferences are presented for sediment cores from two Florida lakes, one of which demonstrates a problematic application, and the other of which does not.     

Responses and structural recovery of periphytic diatom communities after short-term disturbance in some rivers (Hanoi, Vietnam)

Field transfer experiments of periphytic diatom assemblages developed on artificial substrates were set up to assess the responses of those communities to environmental disturbances. The glass slides were positioned for colonization at the relatively unpolluted site (Red, in the Red River) and at the heavily polluted site (TL, in the To Lich River) in the beginning of the experiment. After a period of 2?weeks, the colonized glass slides were concomitantly transferred from the unpolluted Red site to the heavily polluted TL site and to the moderate polluted site (NT₂, in the Nhue River) and, conversely, from the TL site to the Red site, and then to the NT₂ site. The responses and the adapting capacity of periphytic diatom communities to environmental changes were assessed through the cell density, diversity index, species richness, taxonomic composition, and diatom indices after 2 and 4?weeks of transfer periods. For all transfers except for the transfer from the Red to the TL site in which the growth inhibition of diatom cells was found, the diatom density significantly increased until the end of the experiment. Thus, the diatom communities have expressed their pollution tolerance or sensitivities by changing their composition to adapt themselves to environmental changes. Characteristic species of the Red site (Gyrosigma scalproides, Navicula recens) were replaced by Nitzschia palea, Nitzschia umbonata, Aulacoseira granulate typical species of the NT₂ site, in the biofilm transferred from the Red site to the NT₂ site. The relative abundances of typical diatom species of the Red site proliferated in the biofilm transferred from the TL site to the Red site. The replacement of periphytic diatom communities appeared after the transfer from the second week at the different sites. The slow shift of the species towards the typical species at the TL site could result from the organized structure of diatoms within biofilm before the transfer from the Red site to the TL site. The shifts in values of the Index of Specific Polluosensitivity and Diatom Assemblage Index to organic pollution throughout the experiment indicated the clear sensitivity of these indices to water quality changes.