Ant assemblages in isolated trees are more sensitive to species loss and replacement than their woodland counterparts

Isolated trees possess an arthropod assemblage different to that found in woodland trees. While isolated trees become an increasingly dominant part of many landscapes, with ‘off reserve’ habitat conservation potential, we know little about the drivers of their assemblage structure. While sampling bimonthly for 12 months in the seasonally dry tropics of Mexico, we characterized the ant species most likely to occupy isolated trees in comparison to small woody patches (‘matorral’; 0.13–0.74 ha), and examined the influence of environmental variables on the respective ant assemblages at both canopy and ground level. Isolated trees possessed a predictable ant assemblage: when compared to the woodland patches, isolated trees were characterised by a lack of specialised arboreal species and an increase in generalised terrestrial species reaching the canopy. Arboreal woodland ant species were as affected by tree isolation as the terrestrial woodland ant fauna. Ant assemblages at isolated trees correlated with a series of microenvironmental (microclimate and biophysical) variables, but this was not the case for the ant assemblages in woodlands. This suggests that at very small habitat sizes (e.g., isolated trees), microenvironment influences assemblage composition by favouring more environmentally tolerant or opportunistic species. Although we were unable to identify alternative variables (e.g., patch area, connectivity) which correlated with assemblage composition in larger habitat patches, it appears that in such patches, local microenvironment is less closely associated with assemblage structure, and variables such as patch and landscape configuration become increasingly important. In a practical sense, micro-habitat restoration aimed at augmentation of vegetation surrounding isolated trees may therefore be an effective means of increasing matrix habitat quality and increasing the partitioning of the arboreal and terrestrial faunas, thereby conserving a broader range of species. More generally, movement of matrix species into habitat patches appears to apply universally over a range of scales and taxa, and provides a distinct contrast to the predictions based on the Theory of Island Biogeography.     

Nonencapsulated or nontypeable Haemophilus influenzae are more likely than their encapsulated or serotypeable counterparts to have mutations in their fucose operon

Population biology of Haemophilus influenzae can be studied by multilocus sequence typing (MLST), and isolates are assigned sequence types (STs) based on nucleotide sequence variations in seven housekeeping genes, including fucK. However, the ST cannot be assigned if one of the housekeeping genes is absent or cannot be detected by the current protocol. Occasionally, strains of H. influenzae have been reported to lack the fucK gene. In this study, we examined the prevalence of this mutation among our collection of H. influenzae isolates. Of the 704 isolates studied, including 282 encapsulated and 422 nonencapsulated isolates, nine were not typeable by MLST owing to failure to detect the fucK gene. All nine fucK-negative isolates were nonencapsulated and belonged to various biotypes. DNA sequencing of the fucose operon region confirmed complete deletion of genes in the operon in seven of the nine isolates, while in the remaining two isolates, some of the genes were found intact or in parts. The significance of these findings is discussed.     

Brucella-Salmonella lipopolysaccharide chimeras are less permeable to hydrophobic probes and more sensitive to cationic peptides and EDTA than are their native Brucella sp. counterparts.

A rough (R) Brucella abortus 45/20 mutant was more sensitive to the bactericidal activity of polymyxin B and lactoferricin B than was its smooth (S) counterpart but considerably more resistant than Salmonella montevideo. The outer membrane (OM) and isolated lipopolysaccharide (LPS) of S. montevideo showed a higher affinity for these cationic peptides than did the corresponding B. abortus OM and LPS. We took advantage of the moderate sensitivity of R B. abortus to cationic peptides to construct live R B. abortus-S-LPS chimeras to test the activities of polymyxin B, lactoferricin B, and EDTA. Homogeneous and abundant peripheral distribution of the heterologous S-LPS was observed on the surface of the chimeras, and this coating had no effect on the viability or morphology of the cells. When the heterologous LPS corresponded to the less sensitive bacterium S B. abortus S19, the chimeras were more resistant to cationic peptides; in contrast, when the S-LPS was from the more sensitive bacterium S. montevideo, the chimeras were more susceptible to the action of peptides and EDTA. A direct correlation between the amount of heterologous S-LPS on the surface of chimeric Brucella cells and peptide sensitivity was observed. Whereas the damage produced by polymyxin B in S. montevideo and B. abortus-S. montevideo S-LPS chimeras was manifested mainly as OM blebbing and inner membrane rolling, lactoferricin B caused inner membrane detachment, vacuolization, and the formation of internal electron-dense granules in these cells. Native S and R B. abortus strains were permeable to the hydrophobic probe N-phenyl-1-naphthylamine (NPN). In contrast, only reduced amounts of NPN partitioned into the OMs of the S. montevideo and B. abortus-S. montevideo S-LPS chimeras. Following peptide exposure, accelerated NPN uptake similar to that observed for S. montevideo was detected for the B. abortus-S. montevideo LPS chimeras. The partition of NPN into native or EDTA-, polymyxin B-, or lactoferricin B-treated LPS micelles of S. montevideo or B. abortus mimicked the effects observed with intact cells, and this was confirmed by using micelle hybrids of B. abortus and S. montevideo LPSs. The results showed that LPS is the main cause of B. abortus' resistance to bactericidal cationic peptides, the OM-disturbing action of divalent cationic chelants, and OM permeability to hydrophobic substances. It is proposed that these three features are related to the ability of Brucella bacteria to multiply within phagocytes.     

Species are not most abundant in the centre of their geographic range or climatic niche

The pervasive idea that species should be most abundant in the centre of their geographic range or centre of their climatic niche is a key assumption in many existing ecological hypotheses and has been declared a general macroecological rule. However, empirical support for decreasing population abundance with increasing distance from geographic range or climatic niche centre (distance–abundance relationships) remains fairly weak. We examine over 1400 bird, mammal, fish and tree species to provide a thorough test of distance–abundance relationships, and their associations with species traits and phylogenetic relationships. We failed to detect consistent distance–abundance relationships, and found no association between distance–abundance slope and species traits or phylogenetic relatedness. Together, our analyses suggest that distance–abundance relationships may be rare, difficult to detect, or are an oversimplification of the complex biogeographical forces that determine species spatial abundance patterns.     

Two Southern Ocean diatoms are more sensitive to ocean acidification and changes in irradiance than the prymnesiophyte Phaeocystis antarctica

To better understand the impact of ocean acidification (OA) and changes in light availability on Southern Ocean phytoplankton physiology, we investigated the effects of pCO₂ (380 and 800 µatm) in combination with low and high irradiance (20 or 50 and 200 µmol photons m^?2 s^?1) on growth, particulate organic carbon (POC) fixation and photophysiology in the three ecologically relevant species Chaetoceros debilis, Fragilariopsis kerguelensis and Phaeocystis antarctica. Irrespective of the light scenario, neither growth nor POC per cell was stimulated by OA in any of the tested species and the two diatoms even displayed negative responses in growth (e.g. C. debilis) or POC content (e.g. F. kerguelensis) under OA in conjunction with high light. For both diatoms, also maximum quantum yields of photosystem II (F_v/F_m) were decreased under these conditions, indicating lowered photochemical efficiencies. To counteract the negative effects by OA and high light, the two diatoms showed diverging photoacclimation strategies. While cellular chlorophyll a (Chl a) and fucoxanthin contents were enhanced in C. debilis to potentially maximize light absorption, F. kerguelensis exhibited reduced Chl a per cell, increased disconnection of antennae from photosystem II reaction centers and strongly lowered absolute electron transport rates (ETR). The decline in ETRs in F. kerguelensis might be explained in terms of different species‐specific strategies for tuning the available flux of adenosine triphosphate and nicotinamide adenine dinucleotide phosphate. Overall, our results revealed that P. antarctica was more tolerant to OA and changes in irradiance than the two diatoms, which may have important implications for biogeochemical cycling.     

Reactions to children's faces: Males are more affected by resemblance than females are, and so are their brains

The detection of genetic relatedness (i.e., kinship) affects the social, parental, and sexual behavior of many species. In humans, self-referent phenotype matching based on facial resemblance may indicate kinship, and it has been demonstrated that facial resemblance increases perceptions of trustworthiness and attractiveness [Proc. R. Soc. Lond., B Biol. Sci. 269 (2002) 1307–1312; Proc. R. Soc. Lond., B Biol. Sci. (in press)]. However, investigations of sex differences in reaction to facial resemblance have produced mixed results [Evol. Hum. Behav. 25 (2004) 142–154; Evol. Hum. Behav. 23 (2002) 159–166; Evol. Hum. Behav. 24 (2003) 81–87]. Here, we replicate the effects of Platek et al. [Evol. Hum. Behav. 23 (2002) 159–166] using high-resolution color morphing. We also extend these findings using functional magnetic resonance imaging (fMRI) to demonstrate a possible neural mechanism that may account for the observed sex difference. These data support the hypothesis that human males may use and favor facial resemblance as a paternity cue.     

Community structure analyses are more sensitive to differences in soil bacterial communities than anonymous diversity indices

Changes in the diversity and structure of soil microbial communities may offer a key to understanding the impact of environmental factors on soil quality in agriculturally managed systems. Twenty-five years of biodynamic, bio-organic, or conventional management in the DOK long-term experiment in Switzerland significantly altered soil bacterial community structures, as assessed by terminal restriction fragment length polymorphism (T-RFLP) analysis. To evaluate these results, the relation between bacterial diversity and bacterial community structures and their discrimination potential were investigated by sequence and T-RFLP analyses of 1,904 bacterial 16S rRNA gene clones derived from the DOK soils. Standard anonymous diversity indices such as Shannon, Chao1, and ACE or rarefaction analysis did not allow detection of management-dependent influences on the soil bacterial community. Bacterial community structures determined by sequence and T-RFLP analyses of the three gene libraries substantiated changes previously observed by soil bacterial community level T-RFLP profiling. This supported the value of high-throughput monitoring tools such as T-RFLP analysis for assessment of differences in soil microbial communities. The gene library approach also allowed identification of potential management-specific indicator taxa, which were derived from nine different bacterial phyla. These results clearly demonstrate the advantages of community structure analyses over those based on anonymous diversity indices when analyzing complex soil microbial communities.     

Modularity and intra-floral integration in metameric organisms: plants are more than the sum of their parts

Within-individual variation in virtually every conceivable morphological and functional feature of reiterated structures is a pervasive feature of plant phenotypes. In particular, architectural effects, regular, repeatable patterns of intra-individual variation in form and function that are associated with position are nearly ubiquitous. Yet, flowers also are predicted to be highly integrated. For animal-pollinated plants, the coordination of multiple organs within each flower is required to achieve the complex functions of pollinator attraction and orientation, pollen donation and pollen receipt. To the extent that pollinators may select for multiple independent functions, phenotypic integration within flowers may also be modular. That is, subsets of floral structures may be integrated but vary independently of other subsets of structures that are themselves integrated. How can phenotypic integration and modularity be understood within the context of architectural effects? This essay reviews recent research on patterns of floral integration and modularity and explores the potential for spatial and temporal changes in the selective environment of individual flowers to result in positional variation in patterns of morphological integration.     

Proteases and chaperones are the most abundant proteins in the parasitophorous vacuole of Plasmodium falciparum-infected erythrocytes

After invasion of erythrocytes, the human malaria parasite Plasmodium falciparum resides within a parasitophorous vacuole (PV) which forms an interface between the host cell cytosol and the parasite surface. This vacuole protects the parasite from potentially harmful substances, but allows access of essential nutrients to the parasite. Furthermore, the vacuole acts as a transit compartment for parasite proteins en route to the host cell cytoplasm. Recently we developed a strategy to biotin label soluble proteins of the PV. Here, we have paired this strategy with a high-throughput MALDI-TOF-MS analysis to identify 27 vacuolar proteins. These proteins fall into the following main classes: chaperones, proteases, and metabolic enzymes, consistent with the expected functions of the vacuole. These proteins are likely to be involved in several processes including nutrient acquisition from the host cytosol, protein sorting within the vacuole, and release of parasites at the end of the intraerythrocytic cycle.     

Dynamics of dendritic spines and their afferent terminals: spines are more motile than presynaptic boutons

Previous work has established that dendritic spines, sites of excitatory input in CNS neurons, can be highly dynamic, in later development as well as in mature brain. Although spine motility has been proposed to facilitate the formation of new synaptic contacts, we have reported that spines continue to be dynamic even if they bear synaptic contacts. An outstanding question related to this finding is whether the presynaptic terminals that contact dendritic spines are as dynamic as their postsynaptic targets. Using multiphoton time-lapse microscopy of GFP-labeled Purkinje cells and DiI-labeled granule cell parallel fiber afferents in cerebellar slices, we monitored the dynamic behavior of both presynaptic terminals and postsynaptic dendritic spines in the same preparation. We report that while spines are dynamic, the presynaptic terminals they contact are quite stable. We confirmed the relatively low levels of presynaptic terminal motility by imaging parallel fibers in vivo. Finally, spine motility can occur when a functional presynaptic terminal is apposed to it. These analyses further call into question the function of spine motility, and to what extent the synapse breaks or maintains its contact during the movement of the spine.     

Dinitrosyliron complexes are the most abundant nitric oxide-derived cellular adduct: biological parameters of assembly and disappearance

It is well established that nitric oxide (^•NO) reacts with cellular iron and thiols to form dinitrosyliron complexes (DNIC). Little is known, however, regarding their formation and biological fate. Our quantitative measurements reveal that cellular concentrations of DNIC are proportionally the largest of all ^•NO-derived adducts (900 pmol/mg protein, or 45-90 μM). Using murine macrophages (RAW 264.7), we measured the amounts, and kinetics, of DNIC assembly and disappearance from endogenous and exogenous sources of ^•NO in relation to iron and O₂ concentration. Amounts of DNIC were equal to or greater than measured amounts of chelatable iron and depended on the dose and duration of ^•NO exposure. DNIC formation paralleled the upregulation of iNOS and occurred at low physiologic ^•NO concentrations (50-500 nM). Decreasing the O₂ concentration reduced the rate of enzymatic ^•NO synthesis without affecting the amount of DNIC formed. Temporal measurements revealed that DNIC disappeared in an oxygen-independent manner (t_1/2 = 80 min) and remained detectable long after the ^•NO source was removed (> 24 h). These results demonstrate that DNIC will be formed under all cellular settings of ^•NO production and that the contribution of DNIC to the multitude of observed effects of ^•NO must always be considered.     

Pure hereditary spastic paraparesis: an exclusion map covering more than 40% of the autosomal genome

Pure hereditary spastic paraparesis (HSP) is an upper motor neuron syndrome clinically characterized by slowly progressive weakness and spasticity of the legs. To determine the chromosomal location of the genetic defect, a five-generational Dutch family with autosomal dominant pure HSP was subjected to linkage studies. Analysis was carried out on 48 members spanning three generations, of whom 23 individuals are definitely affected. By screening the genome with a total of 167 microsatellite markers distributed over all autosomes, an exclusion map for HSP was constructed. Depending on the actual size of the human genome, our exclusion map covered between 40% and 65% of its autosomal length. Loci on chromosomes 1, 8, 13, 14, and 18 showed slightly positive lod scores. The areas around these loci were investigated more closely, but no conclusive evidence for, or against, linkage could be obtained.     

Plant dispersal by teal (Anas crecca) in the Camargue: duck guts are more important than their feet

1. Migratory waterbirds are major vectors for the dispersal of aquatic plants. However, quantitative field studies of the frequency of transport are scarce, and the relative importance of internal and external transport remains unclear. 2. We quantified and compared the rates of internal and external transport of aquatic plant propagules by teal (Anas crecca) in the Camargue (southern France), inspecting the lower gut contents of birds that had been shot (n = 366) and washing birds that had been live‐trapped (n = 68) during the winters of 2006–2007 and 2007–2008. 3. Intact propagules (n = 902) of 21 plant taxa were recorded in the rectum of teal, of which 16 germinated or were shown to be viable. Intact propagules were recorded in the rectum of 20% of teal, with up to 171 propagules per individual bird. Chara oogonia were most abundant (60% of intact propagules), suggesting that small size favours internal transport. Eleocharis palustris, Juncus spp. and Potamogeton pusillus (17, 7 and 6% of intact propagules, respectively) were also very abundant. 4. Intact propagules (n = 12) of 10 plant taxa were found on the outside of live teal, and four of these taxa later germinated. Intact propagules were found on 18% of teal. No teal was found to carry more than one propagule externally. There was no difference in size between propagules transported internally and externally. 5. Teal are major dispersers of plants within the Camargue, despite being highly granivorous. Contrary to widespread assumptions in the literature, endozoochory by ducks appears to be a much more important mode of dispersal for aquatic plants than exozoochory. We found no evidence of changes in the probability of plant propagule dispersal at a landscape scale over the course of the winter, so propagule production and zoochory appear to be decoupled over time in aquatic systems.     

Introduced species: domestic mammals are more significant transmitters of parasites to native mammals than are feral mammals

The study of parasitism related to biological invasion has focused on attributes and impacts of parasites as invaders and the impact of introduced hosts on endemic parasitism. Thus, there is currently no study of the attributes of hosts which influence the invasiveness of parasites. We aimed to determine whether the degree of domestication of introduced mammalian species – feral introduced mammals, livestock or pets, hereafter ‘D’ – is important in the spillover of introduced parasites. The literature on introduced parasites of mammals in Chile was reviewed. We designed an index for estimating the relevance of the introduced host species to parasite spillover and determined whether the D of introduced mammals predicted this index. A total of 223 introduced parasite species were found. Our results indicate that domestic mammals have a higher number of introduced parasites and spillover parasites, and the index indicates that these mammals, particularly pets, are more relevant introducers than introduced feral mammals. Further analyses indicated that the higher impact is due to higher parasite richness, a longer time since introduction and wider dispersal, as well as how these mammals are maintained. The greater relevance of domestic mammals is important given that they are basically the same species distributed worldwide and can become the main transmitters of parasites to native mammals elsewhere. This finding also underlines the feasibility of management in order to reduce the transmission of parasites to native fauna through anti-parasitic treatment of domestic mammals, animal-ownership education and the prevention of importing new parasite species.     

Coralline algal structure is more sensitive to rate,rather than the magnitude,of ocean acidification

Marine pCO₂ enrichment via ocean acidification (OA), upwelling and release from carbon capture and storage (CCS) facilities is projected to have devastating impacts on marine biomineralisers and the services they provide. However, empirical studies using stable endpoint pCO₂ concentrations find species exhibit variable biological and geochemical responses rather than the expected negative patterns. In addition, the carbonate chemistry of many marine systems is now being observed to be more variable than previously thought. To underpin more robust projections of future OA impacts on marine biomineralisers and their role in ecosystem service provision, we investigate coralline algal responses to realistically variable scenarios of marine pCO₂ enrichment. Coralline algae are important in ecosystem function; providing habitats and nursery areas, hosting high biodiversity, stabilizing reef structures and contributing to the carbon cycle. Red coralline marine algae were exposed for 80 days to one of three pH treatments: (i) current pH (control); (ii) low pH (7.7) representing OA change; and (iii) an abrupt drop to low pH (7.7) representing the higher rates of pH change observed at natural vent systems, in areas of upwelling and during CCS releases. We demonstrate that red coralline algae respond differently to the rate and the magnitude of pH change induced by pCO₂ enrichment. At low pH, coralline algae survived by increasing their calcification rates. However, when the change to low pH occurred at a fast rate we detected, using Raman spectroscopy, weaknesses in the calcite skeleton, with evidence of dissolution and molecular positional disorder. This suggests that, while coralline algae will continue to calcify, they may be structurally weakened, putting at risk the ecosystem services they provide. Notwithstanding evolutionary adaptation, the ability of coralline algae to cope with OA may thus be determined primarily by the rate, rather than magnitude, at which pCO₂ enrichment occurs.     

Single-stranded DNA condensed with poly-l-lysine results in nanometric particles that are significantly smaller,more stable in physiological ionic strength fluids and afford higher efficiency of gene delivery than their double-stranded counterparts

Nonviral gene transfer vectors have been actively studied in the past years in order to obtain structural entities with minimum size and defined shape. The final size of a gene transfer vector, which is compacted into unimolecular complexes, is directly proportional to the mass of the nucleic acid to be compacted. Thus, the purpose of this study was to assess the possibility of producing ssDNA vectors and their biophysical and biological characterization. We have obtained ssDNA/poly-l-lysine complexes that are significantly smaller than their double-stranded counterparts. We have also identified a lesser aggregative behavior of compacted single-stranded vs. double-stranded DNA vectors in the presence of physiological NaCl concentrations. Expression of compacted ssDNA is observed in hepatoma cell lines. Moreover, we have successfully delivered galactosylated ssDNA complexes into cells that express the asialoglycoprotein receptor via receptor-mediated endocytosis. The reduced size and biophysical behavior of ssDNA vectors may provide an advantage for transfection of eukaryotic cells.