A Framework for Assessment of Ecological Risks from Multiple Activities

The standard framework for ecological risk assessment does not explicitly address multiple activities. Although this has not prevented its use for assessments of risks from multiple agents, the routine assessment of complex programs or of multiple agents acting on a site, watershed or region would be aided by use of a framework that is designed for that purpose. The framework proposed in this paper is modular with respect to the individual activities which makes the assessment more manageable and more efficient when the same activities are addressed in multiple programs or at multiple sites. It explicitly allows for analysis of indirect effects in terms of causal chains. It includes links to other risk assessments for which changes in ecological conditions are the hazardous agent. For example, changes in ecological condition may create risks to agricultural economies or to the cultural resource values of a site. Finally, the framework includes a standard approach to estimating the combined effects of the multiple agents acting on a receptor.     

The SET and ERITME indices: Integrative tools for the management of polluted sites

To address the lack of biological methods for assessing soil quality and its contaminant retention capacity and to provide a tool with which stakeholders can assess the risk of transfer of trace elements in the soil to the soil fauna, the Sum of the Excess of Transfers (SET) index from soil to the snail Cantareus aspersus has been broadened to include the internal concentrations of reference (CIRef) for 14 metals and metalloids (As, Cd, Co, Cu, Cr, Hg, Mo, Ni, Pb, Sb, Sn, Sr, Tl and Zn). Weighting the transfer of these elements by a risk coefficient (i.e., their toxicity point) provides a new assessment tool for stakeholders: the ERITME (Evaluation of the Risk of the Transferred Metal Elements) tool. This upgraded tool has been used to highlight unsuspected risks and revise management priorities at an industrial site. Moreover, using the tool to determine the risk from metal trace elements allows for improved environmental risk assessment, as ERITME is an integrative tool based on the real bioavailability of metals rather than chemical measures that often lead to unsatisfactory assessments of transfer. The SET and ERITME integrative tools, using snails as indicators of trace element zooavailability, can be used in environmental risk assessment.     

Challenges and Research Needs for Risk Assessment of Pesticides for Registration in Africa

Risk assessment is necessary for registration and risk management of new pesticides. The aim of this article is to discuss challenges that risk assessors in Africa face when conducting risk assessment of pesticides. Risk assessment requires toxicity assessment, environmental fate studies, and the use of models for occupational, dietary, residential, and environmental exposure assessments. Toxicity studies are very costly with the result that toxicity data used to register pesticides in Africa are often sourced from northern hemisphere countries. Assessors also often use exposure modeling results from the northern hemisphere. This is not an ideal approach as occupational exposure is influenced by agricultural practices, climatic conditions, and other factors. Furthermore, residential exposure models require time-location-activity information, exposure factors, and toxicokinetic rate constants for particular pesticides. Dietary exposure assessment needs accurate and comprehensive local food consumption data. Authorities in African countries should therefore generate the required data, despite these being very costly and tedious. Authorities should also provide guidance on the type of models and standard scenarios for estimating predicted environmental concentrations in various environmental compartments. It is recommended that higher educational institutions in Africa should incorporate risk assessment in general and pesticide toxicity and exposure models in particular in their curricula.     

The Apache Longbow–Hellfire Missile Test at Yuma Proving Ground: Ecological Risk Assessment for Helicopter Overflight

A multi-stressor risk assessment was conducted at Yuma Proving Ground, Arizona, as a demonstration of the Military Ecological Risk Assessment Framework. The focus of the assessment was a testing program at Cibola Range, which involved an Apache Longbow helicopter firing Hellfire missiles at moving targets, that is, M60-A1 tanks. This article focuses on the wildlife risk assessment for the helicopter overflight. The primary stressors were sound and the view of the aircraft. Exposure to desert mule deer (Odocoileus hemionus crooki) was quantified using Air Force sound contour programs NOISEMAP and MR_NMAP, which gave very different results. Slant distance from helicopters to deer was also used as a measure of exposure that integrated risk from sound and view of the aircraft. Exposure-response models for the characterization of effects consisted of behavioral thresholds in sound exposure level or maximum sound level units or slant distance. Available sound thresholds were limited for desert mule deer, but a distribution of slant-distance thresholds was available for ungulates. The risk characterization used a weight-of-evidence approach and concluded that risk to mule deer behavior from the Apache overflight is uncertain, but that no risk to mule deer abundance and reproduction is expected.     

Mobile phone use and location of glioma: A case–case analysis

We assessed a new approach for evaluating the glioma risk among users of mobile phones to focus on the part of the brain most heavily exposed to radiofrequency electromagnetic fields from mobile phones. The tumor midpoint was defined from radiological imaging. A case–case analysis with 99 gliomas was performed using logistic regression. The exposed cases were those with the tumor mid‐point within 4.6 cm from the line between the mouth and the external meatus of the ear, representing the most likely location of the mobile phone (the source of exposure). Alternative analyses based on various indicators of mobile phone use as the outcome were also carried out. The majority of cases were regular mobile phone users. A slightly higher proportion of gliomas among mobile phone users than non‐users occurred within 4.6 cm from the presumed location of the mobile phone (28% vs. 14%). Modestly elevated odds ratios were observed for several indicators of mobile phone use, but without an exposure gradient. The highest odds ratios were found for contralateral and short‐term use. Our results, though limited by the small sample size, demonstrate that detailed information on tumor location allows evaluation of the risk related to the most heavily exposed part of the brain, representing direct evaluation of the possible local carcinogenic effects of the radiofrequency fields. However, field strength varies between users and over time also within a given anatomic site, due to the output power of the phone. Collaborative analysis of a larger sample is planned. Bioelectromagnetics 30:176–182, 2009. © 2009 Wiley‐Liss, Inc.     

GoBean: a Java GUI application for visual exploration of GO term enrichments

We have developed a biologist-friendly, Java GUI application (GoBean) for GO term enrichment analysis. It was designed to be a comprehensive and flexible GUI tool for GO term enrichment analysis, combining the merits of other programs and incorporating extensive graphic exploration of enrichment results. An intuitive user interface with multiple panels allows for extensive visual scrutiny of analysis results. The program includes many essential and useful features, such as enrichment analysis algorithms, multiple test correction methods, and versatile filtering of enriched GO terms for more focused analyses. A unique graphic interface reflecting the GO tree structure was devised to facilitate comparisons of multiple GO analysis results, which can provide valuable insights for biological interpretation. Additional features to enhance user convenience include built in ID conversion, evidence code-based gene-GO association filtering, set operations of gene lists and enriched GO terms, and user -provided data files. It is available at http://neon.gachon.ac.kr/GoBean/.     

Web-Based Chronobiological Analysis

In this paper we describe a computer application that allows users from all over the world to perform chronobiological analyses with popular Internet browsers. Our application is based on the client-server philosophy, and it has been designed so as to minimize the network resources and connections to be used. Presently, our application includes several well-known data analysis techniques, mainly, that known as the cosinor method and those related. All the problems concerning security restrictions are solved, so that the user can have a real interactive chronobiological application.     

Institutional responsibilities in contamination control in research animals and occupational health and safety for animal handlers

The mechanisms for controlling microbial contamination in research animals are similar to those for preventing exposure among animal handlers to naturally occurring pathogens, research-related biohazards, or animal allergens. Research and resource preservation are the primary goals of each approach, and an appropriate assessment of risk is their foundation. The identification of potential risks enables the implementation of relevant risk management or control measures. This article summarizes the components of an occupational health and safety program for animal handlers, including screening, training, work practices, effective use of engineering controls, selection and use of personal protective equipment, and emergency response protocols. The features of a risk assessment and risk management program and the level of interaction and training required to implement and sustain the program correlate well with programs designed to control microbial contamination in laboratory animals. This article includes an explanation of the five Ps of risk assessment and risk management. Pathogens and the proposed experimental procedures account for the first two Ps; the other three focus on training and awareness of the personnel involved in the experiment, protective equipment and work practices, and factors associated with the place (or facility) where the research will be conducted. Animal handlers comprehension and knowledge determine the success of any containment program, and so this review also includes a discussion of critical teaching points for animal handlers and of the importance of evaluating personnel to verify their proficiency and competence in required protocols.     

Review of chemical,physical, and toxicologic properties of components of total petroleum hydrocarbons

Risk is a function of exposure and hazard, and both aspects must be incorporated into sound risk assessment efforts. However, risk assessment for sites contaminated with petroleum products is complicated by a general lack of information relevant to exposure to and toxicity of petroleum mixtures (especially total petroleum hydrocarbons, or TPH). Specifically, there is often inadequate information about the components of the TPH present at the site and the physical and chemical properties and toxicities of these components. Such information is crucial to developing a strong conceptual model of exposure to and risk from petroleum hydrocarbons at contaminated sites. This article presents information that can be incorporated into risk assessments for sites contaminated with petroleum hydrocarbons.     

Evaluation and Spatial Diffusion of Health Risk of Persistent Organic Pollutants (POPs) in Soils Surrounding Chemical Industrial Parks in China

A case study of the cancer risk to humans posed by persistent organic pollutants (POPs) in an industrial area of China, which has a long history of contamination from many sources, is presented. Relatively great concentrations of POPs around the chemical industrial parks have the potential to be chronically carcinogenic to local people. Sixteen individual PAHs listed for priory control by the U.S. Environmental Protection Agency (USEPA), metabolites of DDTs, and isomers of HCHs were measured in soils and a human health risk assessment was conducted by use of USEPA exposure models for children and adults, respectively. Geostatistical methods were used to simulate the spatial diffusion of potential carcinogenic risk, and non-parametric Mann-Whitney U and Kruskal-Wallis tests were employed to analyze the impact of point sources on the surrounding area. The mean value of the sum of Excess Lifetime Cancer Risk (∑ELCR) exceeded the generally acceptable risk level of 1.0E-06 recommended by the USEPA for carcinogenic chemicals. The maximum ∑ELCR was 2.9E-04 for children, which was observed inside the chemical industrial parks. Contamination at the chemical industrial parks caused significant spatial diffusion of ELCR values caused by PAHs, DDT, and HCH.     

Are all distributions of risk with the same 95thpercentile equally acceptable?

When evaluating a probabilistic health risk assessment, say at a hazardous waste site, risk managers need a risk management policy that distinguishes an acceptable distribution of risks to individuals in a population from an unacceptable one. If a risk manager decides that the distribution of risk for the status quo is unacceptable, then a risk assessor needs a way to compute cleanup targets, i.e., the risk assessor needs a policy statement against which to estimate distributions of exposure point concentrations which, if engineered at a site, will achieve an acceptable distribution of risk. Some regulatory agencies base acceptability on whether the 95^th percentile of the risk distribution falls at or below a given value, without considering the behavior of the rest of the distribution. As regulatory agencies adopt risk management policies for use with probabilistic risk assessments, we recommend that they base their new policies on two simultaneously binding constraints‐one on an upper percentile and one on the arithmetic mean of the distribution of risk‐in addition to other non‐risk criteria.     

Web-Based Chronobiological Analysis

In this paper we describe a computer application that allows users from all over the world to perform chronobiological analyses with popular Internet browsers. Our application is based on the client-server philosophy, and it has been designed so as to minimize the network resources and connections to be used. Presently, our application includes several well-known data analysis techniques, mainly, that known as the cosinor method and those related. All the problems concerning security restrictions are solved, so that the user can have a real interactive chronobiological application.     

露天煤矿区生态风险评价方法

以露天煤矿区这一脆弱生态系统为对象进行了生态风险评价方法的探讨 ,阐述了生态风险评价的基本概念。针对露天矿区生态环境特点 ,通过描述露天矿区的主要生态环境问题 ,分析了矿区风险源、风险受体以及评价终点 ,最后建立了典型露天煤矿区生态风险的评价指标体系 ,对露天矿区这一典型退化生态系统进行了生态风险评价方法及评价步骤的探索     

PubMed Assistant: a biologist-friendly interface for enhanced PubMed search

MEDLINE is one of the most important bibliographical information sources for biologists and medical workers. Its PubMed interface supports Boolean queries, which are potentially expressive and exact. However, PubMed is also designed to support simplicity of use at the expense of query expressiveness and exactness. Many PubMed users have never tried explicit Boolean queries. We developed a Java program, PubMed Assistant, to make literature access easier in several ways. PubMed Assistant provides an interface that efficiently displays information about the citations and includes useful functions such as keyword highlighting, export to citation managers, clickable links to Google Scholar and others that are lacking in PubMed.     

Programming for the DNA analysis of FCM data on an IBM microcomputer

The analysis of data generated on a flow cytometer (FCM) is often performed on a computer obtained especially for dedicated use with the flow cytometer. This computer component can be expensive and also presents the FCM user with the added burden of mastering specialized programming language or of accepting the secret analytical processes of protected proprietary program routines. We believe that the evolution of more accurate and efficient FCM analyses that have the power to consider complex signal distributions can be assisted by the availability of analysis programs written in languages common to many users. DNA analysis routines written for a relatively inexpensive microcomputer (IBM PC/XT) in Basic and Pascal are described here. The routines can automatically process multiple FCM data files and can provide high-resolution graphic hardcopy. A foreground/background utilization is also described that allows the computer to be available for other uses in the laboratory.     

An access interface for the MS-DOS diskette format of GenBank(R), a gene sequence database

An interface program has been developed for users of MS-DOScomputers and the GenBank(R) gene sequence files in their disketteformat. With the program a user is able to produce keyword,author and entry name listings of GenBank items or to selectGenBank sequences for viewing, printing or decoding. The decodeoption uncompresses sequence data and yields a character filewhich has the format used on GenBank magnetic tapes. Programoptions are chosen by selecting items from command menus. Whilethe program is designed primarily for hard disk operation, italso allows users of diskette-based computers to work with GenBankfiles. Received on July 15, 1987; accepted on July 15, 1987     

Probabilistic risk assessment of inhalation of nickel-rich soil particulates on Jeju Island,Korea

The soils of Jeju Island contain naturally abundant nickel originating from prehistoric volcanic activity. Nickel is a known human carcinogen via inhalation exposure. A risk assessment of soil particle inhalation was conducted for the first time in Korea through the analysis of soil and air data obtained from agricultural sites. Sixteen sites in Jeju were selected—13 farms, 2 citrus orchards, and 1 ranch. Forty-four soil samples were taken from these sites and analyzed for nickel content. Total suspended solids (TSP) and particulate matter up to 10 µm in size (PM10) were measured directly from the agricultural sites, and nickel concentrations in TSP and PM10 were quantified for use in the inhalation risk assessment. We conducted a probabilistic inhalation risk analysis using monitoring data obtained from the 16 sites on Jeju Island. Risk assessment procedures followed both the Korean Ministry of Environment and the U.S. Environmental Protection Agency (USEPA) risk assessment methodologies. The cancer risk associated with inhalation followed by application of the Korean risk assessment approach ranged from 4.98 × 10^?9 to 3.43 × 10^?7, whereas the cancer risk associated with inhalation followed by application of the USEPA risk assessment approach ranged from 3.40 × 10^?9 to 3.74 × 10^?7. This study demonstrates that no carcinogenic risk is associated with inhalation in Jeju, based on a lower cancer risk limit of 10^?6.