Terrestrial detritus supports the food webs in lowland intermittent streams of south‐eastern Australia: a stable isotope study

• 1 Large amounts of terrestrial detritus enter many low‐order forested streams, and this organic material is often the major basal resource in the metazoan food webs of such systems. However, despite their apparently low biomass, algae are the dominant food of organisms in a number of aquatic communities which conventionally would have been presumed to be dependent on allochthonous detritus, particularly those in the tropics and also in lowland intermittent streams in arid Australia.
• 2 The dual stable isotope signatures (δ¹³C and δ¹⁵N) of potential primary food sources were compared with the isotopic signatures of common aquatic animals in lowland intermittent streams in south‐eastern Australia, in both spring and summer, to determine whether allochthonous detritus was an important nutritional resource in these systems. The isotopic signatures of the major potential allochthonous plant food sources (Eucalyptus, Phalaris and Juncus) overlapped, but were distinct from algae and the dominant macrophytes growing in the study reaches. The isotopic signatures of biofilm were more spatially and temporally variable than those of the other basal resources.
• 3 Despite allochthonous detritus having relatively high C : N ratios compared to other potential basal resources, results from isosource mixing model calculations demonstrated that this detritus, and the associated biofilm, were the major energy sources assimilated by macroinvertebrate primary consumers in both spring and summer. The importance of these energy sources was also reflected in animals higher in the food web, including predatory macroinvertebrates and fish. These resources were supplemented by autochthonous sources of higher nutritional value (i.e. filamentous algae and macrophytes, which had relatively low C : N ratios) when they became more prolific as the streams dried to disconnected pools in summer.
• 4 The results highlight the importance of allochthonous detritus (particularly from Eucalyptus) as a dependable energy source for benthic macroinvertebrates and fish in lowland intermittent streams of south‐eastern Australia. This contrasts with previous stable isotope studies conducted in lowland intermittent streams in arid Australia, which have reported that the fauna are primarily dependent on autochthonous algae.

     

Sulfur stable isotope signature identifies the source of reduced sulfur in benthic communities in macrophyte zones of Lake Biwa, Japan

Carbon, nitrogen and sulfur stable isotope ratios (δ¹³C, δ¹⁵N and δ³⁴S) were measured from water column sulfate, sediments, particulate organic matter (POM), macrophytes, periphyton, macroinvertebrates and fish, sampled from the littoral, open water and macrophyte zones of Lake Biwa. In most of the littoral zones, the δ¹³C and δ¹⁵N values of organisms indicated that POM and periphyton support the consumers. However, in the dysoxic interior macrophyte (IM) zone, the δ¹³C values of Sinotaia quadrata histrica, Propsilocerus akamusi and Anodonta woodiana were lower than that of all resources. The δ¹⁵N values of S. quadrata histrica were lower than those of P. akamusi and A. woodiana. δ¹³C and δ¹⁵N values thus failed to distinguish the foods of these consumers. The δ³⁴S values of sediment and S. quadrata histrica were lower than those of water column sulfate, suggesting that this consumer incorporated reduced sulfur derived from sulfate reduction in the sediment by ingesting detritus. In contrast, the δ³⁴S values of P. akamusi and A. woodiana were higher than that of S. quadrata histrica, suggesting that they incorporated sulfur derived from water column sulfate by ingesting POM. Consequently, δ¹³C, δ¹⁵N and δ³⁴S signatures provide complementary estimates of foods for consumers in this freshwater lake.     

Trophic linkages between periphyton and grazing macroinvertebrates in rivers with different levels of catchment development

Stable isotope signatures (δ¹³C and δ¹⁵N) were used to compare trophic linkages between epilithic periphyton and three families of macroinvertebrates (Baetidae, Leptophlebiidae and Gripopterygidae) in riffles of two rivers with developed catchments (including agriculture, urbanization, impoundment and flow regulation) and two with undeveloped catchments (native forest with no major impoundments) in the Murrumbidgee River system, New South Wales, Australia. Periphyton had much higher average δ¹⁵N values and lower average C:N ratios in the developed rivers than in the undeveloped rivers, probably because of the combined effects of nutrient enrichment, upstream impoundment and alteration of riparian vegetation. The invertebrates were generally slightly depleted in ¹³C and ¹⁵N relative to expected values if they were assimilating whole periphyton alone, which suggests that they were assimilating periphyton components selectively or also consuming other foods. The match in isotope signatures between periphyton and invertebrates was only slightly weaker in the developed than in the undeveloped rivers, suggesting that development did not greatly disrupt trophic linkages between periphyton and these invertebrates. Handling editor: M. Power     

Depth‐specific variation in carbon isotopes demonstrates resource partitioning among the littoral zoobenthos

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The organization of macroinvertebrate communities in the major tributaries of the LaTrobe River, Victoria, Australia

SUMMARY.

• 1 Seventeen sites were each sampled six times over 2 years for macroinvertebrates. A range of physicochemical variables was also measured to determine which factors were related to the distribution of species.
• 2 Numerical classification of the faunal data indicated that four groups of sites or communities were distinguishable: lowland sites; sandy upland sites; cobble upland sites from the northern catchment; cobble upland sites from the southern catchment.
• 3 Multiple discriminant analysis and multiple regression analysis demonstrated that particle size of the sediment, concentration of dissolved ions and altitude were the physicochemical features that were most strongly associated with changes in the faunal distribution.
• 4 Abundances of shredders and predators did not vary between the site groups while those of scrapers, gatherers and filterers did: scrapers were most abundant at cobble sites while gatherers and filterers were least abundant on sand and increased in abundance downstream. The distribution of the feeding groups showed some similarity with that predicted by the River Continuum Concept, but the fact that the shredders did not decrease in abundance downstream was a notable difference.
• 5 Abundance of the total fauna at a site was inversely related to the amount of benthic organic matter. This feature is contrary to the pattern usually reported from rivers in the northern hemisphere.

     

Does rapid glacial recession affect feeding habits of alpine stream insects?

1. Glacial retreat, accompanied by shifts in riparian vegetation and glacier meltwater inputs, alters the energy supply and trophic structure of alpine stream food webs. Our goal in this study was to enhance understanding of dietary niches of macroinvertebrates inhabiting different alpine streams with contrasting glacial and non‐glacial (groundwater, precipitation, snowmelt) water inputs in conjunction with seasonal and habitat‐specific variation in basal resource availability.
2. We measured a range of stream physico‐chemical attributes as well as carbon and nitrogen isotopes (δ¹³C, δ¹⁵N) of macroinvertebrates and primary food sources at seven sites across seasons within a Swiss glaciated catchment (Val Roseg) undergoing rapid glacial retreat (1–2 km between 1997 and 2014). Sampling sites corresponded to streams used in a previous (1997/1998) study within the same alpine catchment.
3. Physico‐chemical attributes showed wide variation in environmental conditions across streams and seasons. Significant correlation among physico‐chemical proxies of glacier meltwater (phosphate‐P, total inorganic carbon, conductivity, turbidity) and macroinvertebrate δ¹³C, δ¹⁵N, and size‐corrected standard ellipse area (a proxy for feeding niche width) values showed that the extent of glacial water input shapes the energy base among alpine streams. Feeding niche differences among common alpine stream insect taxa (Chironomidae, Baetidae, Heptageniidae) were not significant, indicating that these organisms probably are plastic in feeding behaviour, opportunistically relying on food resources available in a particular stream and season.
4. Seasonal trends in macroinvertebrate δ¹³C largely followed patterns in periphyton δ¹³C values, indicating that autochthonous resources were the main consumer energy source within the stream network, as shown previously. The overall range in macroinvertebrate δ¹³C (?33.5 to ?18.4‰) and δ¹⁵N (?6.9 to 6.7‰) values also corresponded to values measured in the previous study, suggesting that macroinvertebrates altered diets in line with changes in environmental conditions and food resources during a period of rapid glacial retreat. Our results suggest that environmental changes brought on by rapid glacial retreat have not yet caused a profound change in the trophic structure within these fluvial networks.

     

How well are velocity effects on ∂13C signatures transmitted up the food web from algae to fish?

1. Benthic algae fractionate carbon isotopes less at low water velocities because of reduced boundary layer exchange, and this effect on δ¹³C is passed on to consumers via trophic transfer. This study examines the relationships between δ¹³C signatures of consumers (invertebrates and salmonid fishes) and water velocity in the Sainte Marguerite River, QC, Canada, and compares them to patterns for periphyton, both along the river main‐stem and in a small tributary. 2. Relationships of δ¹³C signatures of herbivore/grazers and collector/gatherers with water velocity were strong and similar to those of periphyton, but relationships for filter‐feeders were weak, probably reflecting the effect of spatial averaging of their food supply as a result of downstream transport. 3. Velocity effects on salmonid signatures were much weaker than those of lower trophic levels, being barely significant except in the small tributary where the fish were resident and isolated from the main river. In the river main‐stem, even when reach standardised (reach mean subtracted from each data point), fish signatures were only weakly related to water velocity. 4. The fidelity with which velocity effects are transmitted to consumers from benthic algae is highly variable, and depends on a combination of consumer and resource movements, in addition to the trophic position of the consumer.     

Use of carbon-13 and carbon-14 natural abundances for stream food web studies

We review the use of stable carbon isotope ratios (δ¹³C) and radiocarbon natural abundances (Δ¹⁴C) for stream food web studies. The δ¹³C value of primary producers (e.g., periphytic algae, hereafter periphyton) in streams is controlled by isotopic fractionation during photosynthesis and variable δ¹³C of dissolved CO₂. When periphyton δ¹³C differs from that of terrestrial primary producers, the relative contribution of autochthony and allochthony to stream food webs can be calculated. Moreover, the variation in periphyton δ¹³C can reveal how much stream consumers rely on local resources because each stream habitat (e.g., riffle vs. pool, open vs. shaded) usually has a distinctive δ¹³C. However, periphyton δ¹³C often overlaps with that of terrestrial organic matter. On the other hand, periphyton Δ¹⁴C is less variable than δ¹³C among habitats, and reflects the Δ¹⁴C of dissolved CO₂, which could be a mixture of “aged” (Δ¹⁴C < 0 ‰) and “modern” (Δ¹⁴C > 0 ‰) carbon. This is because the Δ¹⁴C is corrected by its δ¹³C value for the isotopic fractionation during photosynthesis. Recent studies and our data indicate that many stream food webs are supported by “aged” carbon derived from the watershed via autochthonous production. The combined use of δ¹³C and Δ¹⁴C allows robust estimation of the carbon transfer pathway in a stream food web at multiple spatial scales ranging from the stream habitat level (e.g., riffle and pool) to watershed level (autochthony and allochthony). Furthermore, the Δ¹⁴C of stream food webs will expand our understanding about the time frame of carbon cycles in the watersheds.     

Terrestrialization alters organic matter dynamics and habitat quality for freshwater mussels (Unionoida) in floodplain backwaters

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Stable isotope measurements confirm consumption of submerged macrophytes by macroinvertebrate and fish taxa

Many macrophyte species in lowland streams exhibit signs of grazing and herbivore damage, even though herbivory by aquatic macroinvertebrates and fish is generally considered to be of little importance. In this study, we collected evidence for the hypothesis that herbivory on macrophytes by macroinvertebrates and fish is more widespread than assumed. We measured the dual stable isotope signatures (δ¹³C and δ¹⁵N) of organic matter, epiphyton, submerged macrophytes, macroinvertebrates and fish in a Belgian lowland stream. There was a clear distinction in isotopic signatures of the different basal resources, allowing the use of the SIAR mixing model. These calculations revealed the consumption of macrophyte tissue not only by the phytophagous larvae of Nymphula nitidulata Hufnagel (Lepidoptera: Crambidae), but also by Baetidae nymphs (Ephemeroptera), Orthocladiinae larvae (Diptera: Chironomidae), the crayfish Orconectus limosus Rafinesque (Decapoda: Cambaridae) and the fish Gobio gobio L. (Cypriniformes: Cyprinidae) which are classified as feeding on other resources. Although the potential share of macrophyte biomass in the diet of macroinvertebrates and fish was demonstrated to be up to 49%, this amount is only a small percentage of the total standing macrophyte biomass in a lowland stream. However, the impact of this herbivory may still be substantial because consumption may comprise a significant fraction of the daily primary production. Additionally, small-scale herbivory may still have a negative impact on macrophyte growth and survival, for example through consumption of apical meristems and the increased susceptibility to diseases and toxins if the macrophyte’s epidermis is damaged.     

Stable isotope proxies for evaluating biodiversity in stream biota

Differences in δ¹³C and δ¹⁵N values in stream biota are caused by several environmental conditions. Variations in abundance, species richness and the assemblage structure of stream biota are also caused by several environmental conditions. Hence, abundance, species richness and the assemblage structure of stream biota are expected to be strongly correlated with the differences in value of stable isotopes. In this study, the gaps in δ¹³C and δ¹⁵N between periphyton and charr are discussed in terms of the abundance, genus richness, and assemblage of benthic invertebrates at each site. Gaps in δ¹³C between periphyton and charr were strongly correlated with some aspects of mountainous area and the genus richness of benthic invertebrates at each site. The gaps in δ¹⁵N between periphyton and charr were strongly correlated with the abundance and assemblage structure of benthic invertebrates at the location tested. The δ¹³C values of predators were correlated with some aspects of mountainous area and the assemblage structure of the benthic invertebrates. The δ¹⁵N values of predators were correlated with genus richness and the assemblage structure of the benthic invertebrates. These results suggest that the value gaps in δ¹³C and δ¹⁵N can be used to assess biodiversity and could provide indices for estimating the biodiversity in a stream.     

Factors controlling the stable isotope composition and C:N ratio of seston and periphyton in shallow lake mesocosms with contrasting nutrient loadings and temperatures

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Stable isotope analysis indicates microalgae as the predominant food source of fauna in a coastal forest stream,south‐east Brazil

Abstract: Stable isotope studies of food webs in floodplains, large rivers, mangroves, and seagrasses have shown that, although a large proportion of the biomass may come from higher plants, microalgae provide a disproportionate amount of carbon assimilated by metazoan consumers. Evidence is building that this may also be the case for streams, especially those in the tropics. At the level of individual consumer species we also see that the apparent diet may not be reflected in the carbon assimilated. Tropical streams commonly have omnivore‐detritivore species that potentially show this phenomenon. We tested these concepts in four moderately shaded sites in a stream in well‐preserved Atlantic rainforest at Ilha Grande, Rio de Janeiro. We sampled aquatic insects, shrimps and fish as well as potential terrestrial and aquatic primary food sources. Carbon stocks from terrestrial sources predominated over carbon of algal origin (>99% of total). The primary sources of carbon showed distinctly different isotopic signatures: terrestrial sources had δ¹³C values close to ?30‰, microalgae were ?20‰ and macroalgae were ?25‰. All fauna had δ¹³C values consistent with a carbon source derived from microalgae. Baetid mayflies and atyid shrimps exert a strong grazing pressure on periphyton and organic sediments but appear to assimilate predominantly microalgae. The palaemonid shrimp Macrobrachium olfersi also ingests large amounts of detritus of terrestrial origin, but apparently assimilates animal prey with algal δ¹³C signatures. These results support the growing view that tropical stream food chains are primarily algal based.     

Light Increases Energy Transfer Efficiency in a Boreal Stream

Periphyton communities of a boreal stream were exposed to different light and nutrient levels to estimate energy transfer efficiency from primary to secondary producers using labeling with inorganic ¹³C. In a one-day field experiment, periphyton grown in fast-flow conditions and dominated by opportunistic green algae were exposed to light levels corresponding to sub-saturating (forest shade) and saturating (open stream section) irradiances, and to N and P nutrient additions. In a two-week laboratory experiment, periphyton grown in low-flow conditions and dominated by slowly growing diatoms were incubated under two sub-saturating light and nutrient enrichment levels as well as grazed and non-grazed conditions. Light had significant positive effect on ¹³C uptake by periphyton. In the field experiment, P addition had a positive effect on ¹³C uptake but only at sub-saturating light levels, whereas in the laboratory experiment nutrient additions had no effect on the periphyton biomass, ¹³C uptake, biovolume and community composition. In the laboratory experiment, the grazer (caddisfly) effect on periphyton biomass specific ¹³C uptake and nutrient content was much stronger than the effects of light and nutrients. In particular, grazers significantly reduced periphyton biomass and increased biomass specific ¹³C uptake and C:nutrient ratios. The energy transfer efficiency, estimated as a ratio between ¹³C uptake by caddisfly and periphyton, was positively affected by light conditions, whereas the nutrient effect was not significant. We suggest that the observed effects on energy transfer were related to the increased diet contribution of highly palatable green algae, stimulated by higher light levels. Also, high heterotrophic microbial activity under low light levels would facilitate energy loss through respiration and decrease overall trophic transfer efficiency. These findings suggest that even a small increase in light intensity could result in community-wide effects on periphyton in boreal streams, with a subsequent increase in energy transfer and system productivity.     

Bimodality in stable isotope composition facilitates the tracing of carbon transfer from macrophytes to higher trophic levels

Even though the suitability of macrophytes to act as a carbon source to food webs has been questioned by some studies, some others indicate that macrophyte-derived carbon may play an important role in the trophic transfer of organic matter in the food web of shallow lakes. To evaluate the importance of macrophytes to food webs, we collected primary producers—macrophytes and periphyton—and consumers from 19 South American shallow lakes and analyzed their carbon stable isotopes composition (δ¹³C). Despite the diversity of inorganic carbon sources available in our study lakes, the macrophytes’ δ¹³C signatures showed a clear bimodal distribution: ¹³C-depleted and ¹³C-enriched, averaging at ?27.2 and ?13.5‰, respectively. We argue that the use of either CO₂ or HCO₃ ^? by the macrophytes largely caused the bimodal pattern in δ¹³C signals. The contribution of carbon from macrophytes to the lake’s food webs was not straightforward in most of the lakes because the macrophytes’ isotopic composition was quite similar to the isotopic composition of periphyton, phytoplankton, and terrestrial carbon. However, in some lakes where the macrophytes had a distinct isotopic signature, our data suggest that macrophytes can represent an important carbon source to shallow lake food webs.     

Catabolic diversity of periphyton and detritus microbial communities in a subtropical wetland

The catabolic diversity of wetland microbial communities may be a sensitive indicator of nutrient loading or changes in environmental conditions. The objectives of this study were to assess the response of periphyton and microbial communities in water conservation area-2a (WCA-2a) of the Everglades to additions of C-substrates and inorganic nutrients. Carbon dioxide and CH₄ production rates were measured using 14 days incubation for periphyton, which typifies oligotrophic areas, and detritus, which is prevalent at P-impacted areas of WCA-2a. The wetland was characterized by decreasing P levels from peripheral to interior, oligotrophic areas. Microbial biomass and N mineralization rates were higher for oligotrophic periphyton than detritus. Methane production rates were also higher for unamended periphyton (80 mg CH₄-C kg⁻¹ d⁻¹) than detritus (22 mg CH₄-C kg⁻¹ d⁻¹), even though the organic matter content was higher for detritus (80%) than periphyton (69%). Carbon dioxide production for unamended periphyton (222 mg CO₂-C kg⁻¹ d⁻¹) was significantly greater than unamended detritus (84 mg CO₂-C kg⁻¹ d⁻¹). The response of the heterotrophic microbial community to added C-substrates was related to the nutrient status of the wetland, as substrate-induced respiration (SIR) was higher for detritus than periphyton. Amides and polysaccharides stimulated SIR more than other C-substrates, and methanogenesis was greater contributor to SIR for periphyton than detritus. Inorganic P addition stimulated CO₂ and CH₄ production for periphyton but not detritus, indicating a P limitation in the interior areas of WCA-2a. Continued nutrient loading into oligotrophic areas of WCA-2a or enhanced internal nutrient cycling may stimulate organic matter decomposition and further contribute to undesirable changes to the Everglades ecosystem caused by nutrient enrichment.     

Trophic position and growth stages of Caddisfly (Stenopsyche marmorata Navas) larvae in the Echi River, Japan

We investigated the trophic position of the larval filter-feeding caddisfly species—Stenopsyche marmorata Navas in the Echi River (Japan) using δ¹³C and δ¹⁵N measurements by instar growth stage. We also analyzed δ¹³C and δ¹⁵N of food sources (periphyton and suspended and benthic POM) along the course of the river. The larvae showed some degree of spatial variation in δ¹³C and δ¹⁵N values with a downstream increase in δ¹³C and δ¹⁵N values. Our results demonstrate that the trophic structure of S. marmorata of different larval stages were spatially varying, depending on food sources. Small-sized instars displayed a higher trophic position than larger instars, confirming that their non-selective feeding behavior leads to consumption of items with high δ¹⁵N values according to the spatial distribution of food sources in the riverine system.     

Broad sampling and diverse biomarkers allow characterization of nearshore particulate organic matter

Suspended particulate organic matter (POM) is a primary food source for benthic and pelagic consumers in aquatic and marine ecosystems. POM is potentially composed of many sources including phytoplankton, bacteria, zooplankton and macrophyte (seaweed and seagrass) and terrestrial detritus. The relative importance of these sources to POM consumers is debated, in large part due to differing interpretations of stable isotope and fatty acid biomarkers. We investigated POM composition in a nearshore marine ecosystem using multiple methods including visual quantification of living and detrital components, multiple stable isotope (MSI) and fatty acid (FA) analyses. Sampling was conducted at multiple temporal and spatial scales to 1) determine the range of variability in POM biomarkers, 2) quantitatively evaluate δ¹³C, δ¹⁵N, δ³⁴S and FA biomarkers with proportional abundance of putative sources and 3) determine the availability of phytoplankton, macrophytes and terrestrial carbon in nearshore POM. Variation of total FA concentration and proportions, and δ¹³C and δ³⁴S were strongly correlated to phytoplankton abundance, at tidal and seasonal timescales. Using multivariate multiple regressions, MSI and FA explained 59.6% and 89.7% of the variation in POM composition, respectively. As phytoplankton abundance increased, total FA concentration increased concurrent to δ¹³C and δ³⁴S enrichment. In high detritus samples, bacterial FA and saturated FA were proportionally higher, corresponding to depletion of δ¹³C and δ³⁴S and enrichment of δ¹⁵N. We identify MSI and FA biomarkers that are good predictors of diatom, dinoflagellate and detrital contributions to the POM. The results of this multi‐scale study show that POM composition is highly dynamic and largely driven by phytoplankton abundance, with minor contributions from terrestrial or macrophyte subsidies. This quantitative approach provides novel and critical empirical information linking POM compositional dynamics to specific biomarkers that are commonly used for tracking energy subsidies and biogeochemical cycling in aquatic ecosystems.     

Carbon and nitrogen stable isotope ratios of macroinvertebrates in the littoral zone of Lake Biwa as indicators of anthropogenic activities in the watershed

Carbon and nitrogen stable isotope ratios (δ¹³C and δ¹⁵N) of macroinvertebrates inhabiting littoral zones of lakes can serve as useful indicators of material loading from the watershed. We collected snails (Semisulcospira spp.) and bivalves (Unio douglasiae biwae Kobelt) from 29 littoral sites in Lake Biwa near the mouths of river tributaries with various human population density (HPD) and land-use patterns. The δ¹³C and δ¹⁵N signatures were determined for three potential food sources: particulate organic matter in the pelagic zone (PPOM), riverine particulate organic matter from tributaries (RPOM) and epilithic organic matter in the littoral zone (EOM). The stable isotope mixing model revealed that snails relied mainly on EOM, and bivalves on PPOM and RPOM. Multiple regression analysis showed that intersite variation in δ¹⁵N for snails was best explained by HPD, while variation in δ¹⁵N of EOM and nitrate was explained to a lesser extent by HPD. Comparison with isotope signatures of their food sources and riverine nutrients revealed that snails assimilated anthropogenic nitrogen from wastewater in the watershed. Our results also showed that the δ¹³C value of bivalves was marginally related to the fraction of paddy fields in the watersheds. In conclusion, the isotope signatures of macroinvertebrates inhabiting the littoral zone can be useful indicators of anthropogenic impacts from the watershed.     

Relationship between δ13C of chironomid remains and methane flux in Swedish lakes

1. Methanogenic carbon can be incorporated by methane‐oxidising bacteria, leading to a ¹³C‐depleted stable carbon isotopic composition (δ¹³C) of chironomids that feed on these microorganisms. This has been shown for the chironomid tribe Chironomini, but very little information is available about the δ¹³C of other abundant chironomid groups and the relationship between chironomid δ¹³C and methane production in lakes. 2. Methane flux was measured at the water surface of seven lakes in Sweden. Furthermore, fluxes from the sediments to the water column were measured in transects in two of the lakes. Methane fluxes were then compared with δ¹³C of chitinous chironomid remains isolated from the lake surface sediments. Several different chironomid groups were examined (Chironomini, Orthocladiinae, Tanypodinae and Tanytarsini). 3. Remains of Orthocladiinae in the seven study lakes had the highest δ¹³C values (?31.3 to ?27.0‰), most likely reflecting δ¹³C of algae and other plant‐derived organic matter. Remains of Chironomini and Tanypodinae had lower δ¹³C values (?33.2 to ?27.6‰ and ?33.6 to ?28.0‰, respectively). A significant negative correlation was observed between methane fluxes at the lake surface and δ¹³C of Chironomini (r = ?0.90, P = 0.006). Methane release from the sediments was also negatively correlated with δ¹³C of Chironomini (r = ?0.67, P = 0.025) in the transect samples obtained from two of the lakes. The remains of other chironomid taxa were only weakly or not correlated with methane fluxes measured in our study lakes (P > 0.05). 4. Selective incorporation of methane‐derived carbon can explain the observed correlations between methane fluxes and δ¹³C values of Chironomini. Remains of this group might therefore have the potential to provide information about past changes in methane availability in lakes using sediment records. However, differences in productivity, algal δ¹³C composition and the importance of allochthonous organic matter input between the studied lakes may also have influenced Chironomini δ¹³C. More detailed studies with a higher number of analysed samples and detailed measurement of δ¹³C of different ecosystem components (e.g. methane, dissolved inorganic carbon) will be necessary to further resolve the relative contribution of different carbon sources to δ¹³C of chironomid remains.