The effect of manual removal on movement distances in populations of signal crayfish (Pacifastacus leniusculus)

1. Crayfish are amongst the most frequently introduced non‐native aquatic organisms, with well‐documented negative effects on a large number of freshwater taxa. Many crayfish‐control strategies make use of manual removal by trapping, a method known preferentially to remove the largest individuals, leaving the juvenile population almost entirely untrapped. 2. Removal by trapping may be used in an attempt to delay colonisation of new stretches by invasive crayfish. It is, however, unclear what effects trapping may have on movement distances of crayfish in wild populations. We examine the impacts of removal by trapping on the movements of American signal crayfish in two UK rivers. 3. We studied four 100 m stretches of two rivers, the Evenlode and Thame, comprising two removal and two non‐removal stretches. Each river supported both treatments. Half of the crayfish captured from the removal sections were removed and humanely destroyed by freezing, and half were marked with their trap location and released there. All crayfish captured from the non‐removal sections were marked and returned at the point of capture. 4. Mean movement distances were smaller in the removal stretches than the non‐removal stretches, both within capture sessions (10.8 and 16.0 m, respectively) and between sessions (14.5 and 24.6 m, respectively), suggesting that removal trapping resulted in the remaining crayfish making smaller movements. Larger crayfish under both treatments made substantially larger movements than those with smaller carapace lengths, both within capture sessions (range 7.6–19.6 m) and between range capture sessions (range 8.9–32.6 m). 5. The results of this study are consistent with expectations if removal by trapping lowered population densities, which we speculate may have affected movement distances directly or indirectly through increasing the availability of food and shelter. 6. This study suggests that trapping at the margins of a population may be sufficient to delay colonisation of new stretches by: (i) maintaining low densities and therefore reducing movements, and (ii) preferentially reducing the population of large individuals, which make the largest movements. However, it remains unlikely that any trapping programme can entirely prevent emigration /dispersal, and therefore colonisation, by signal crayfish.     

Intensive removal of signal crayfish (Pacifastacus leniusculus) from rivers increases numbers and taxon richness of macroinvertebrate species

Invasive species are a major cause of species extinction in freshwater ecosystems, and crayfish species are particularly pervasive. The invasive American signal crayfish Pacifastacus leniusculus has impacts over a range of trophic levels, but particularly on benthic aquatic macroinvertebrates. Our study examined the effect on the macroinvertebrate community of removal trapping of signal crayfish from UK rivers. Crayfish were intensively trapped and removed from two tributaries of the River Thames to test the hypothesis that lowering signal crayfish densities would result in increases in macroinvertebrate numbers and taxon richness. We removed 6181 crayfish over four sessions, resulting in crayfish densities that decreased toward the center of the removal sections. Conversely in control sections (where crayfish were trapped and returned), crayfish density increased toward the center of the section. Macroinvertebrate numbers and taxon richness were inversely correlated with crayfish densities. Multivariate analysis of the abundance of each taxon yielded similar results and indicated that crayfish removals had positive impacts on macroinvertebrate numbers and taxon richness but did not alter the composition of the wider macroinvertebrate community. Synthesis and applications: Our results demonstrate that non‐eradication‐oriented crayfish removal programmes may lead to increases in the total number of macroinvertebrates living in the benthos. This represents the first evidence that removing signal crayfish from riparian systems, at intensities feasible during control attempts or commercial crayfishing, may be beneficial for a range of sympatric aquatic macroinvertebrates.     

Movement and dispersal of the invasive signal crayfish Pacifastacus leniusculus in upland rivers

1. The American signal crayfish Pacifastacus leniusculus, an invasive species widely introduced throughout Europe, is a major threat to native European crayfish species and is causing increasing concern because of its wide impact on aquatic ecosystems. 2. Whilst various control and management methods have been proposed, very little is known about the factors influencing dispersal and movements of signal crayfish. 3. Sixty‐four adult signal crayfish (carapace length 31.9–63.8 mm) were radiotagged in upland rivers in northern England, during four periods. Tracking was carried out at two sites, a low‐density establishing population and a high‐density established population. Tracking was carried out at both sites concurrently during midsummer (June to August 2002), during late summer (August to September 2001) at the low‐density population site and during autumn to winter (October to February 2000/01) at the high‐density population site. 4. Maximum movement occurred during midsummer. Temperature appeared to be a major factor influencing the timing and extent of movements between tracking periods. 5. The frequency distribution of the maximum distance moved upstream and downstream by radiotagged crayfish showed an inverse power relationship. The median maximal upstream and downstream distances moved were 13.5 m (range 0–283 m) and 15 m (range 0–417 m), respectively. There was a significant difference between the distributions of upstream and downstream ranges, with greater distances moved downstream. 6. All downstream movements made by crayfish appeared to be active movements and not the result of passive movement during periods of high discharge. There was no apparent influence of size, sex or density on the amount of movement recorded. 7. The study provides important information on the spatial and temporal behaviour of introduced crayfish in upland lotic systems. In contrast to lowland rivers, our results suggest that flow or gradient may influence the invasive potential of signal crayfish in an upstream direction in upland rivers.     

Success and failure in a lotic crayfish invasion: the roles of hydrologic variability and habitat alteration

1. This paper examines the distribution, habitat relationships, and potential for spread of non‐native signal crayfish (Pacifastacus leniusculus) in streams of the Truckee River catchment, California, U.S.A. Crayfish associations with natural features and with impoundments and flow alteration were examined in a survey of 33 streams. Abundance changes were followed over 5 years, which included some of the highest and lowest flows on record, in three streams, two unregulated and one regulated. Movement of marked crayfish was studied in one 0.5 km stream reach just upstream from a reservoir. 2. Signal crayfish were most abundant in low‐gradient streams and were positively associated with proximity to reservoirs (both upstream and downstream). Crayfish were more likely to be found in regulated than unregulated sites, and did not occur in sites upstream of barriers, such as culverts, that separated them from reservoirs or lakes. 3. Crayfish declined in abundance in years following particularly intense and prolonged wet‐season spates, leading to a negative association between crayfish abundance and both peak discharge and duration of bankfull flows. 4. Crayfish moved distances of up to 277 m, and at rates of up to 120 m day^?1, suggesting significant dispersal ability. Larger crayfish moved greater distances and were more likely to move downstream. Female crayfish showed a pattern of upstream movement in early summer and downstream movement late in the summer, opposite the pattern found in two other studies. 5. These results suggest that natural or artificial gradient barriers and, in regulated systems, management of flow regimes to include bankfull or greater flows may help to control invasive crayfish in streams.     

Ranging behaviour of a large freshwater invertebrate, the white-clawed crayfish Austropotamobius pallipes

• 1 Radio‐telemetry and mark‐recapture methods were used to study the summer movements of adult and juvenile white‐clawed crayfish, Austropotamobius pallipes from a wild population in a small braided stream, Dalton Beck, North Yorkshire, U.K. Radio‐transmitters were attached to the chelae of 18 large (> 35 mm carapace length) crayfish and individuals were subsequently located to within 0.15 m. Additionally a total of 888 crayfish were marked with carapace brands, and 83 were recaptured.
• 2 Radio‐tracked crayfish exhibited significantly greater local activity at dusk (21.00–00.00) than at dawn (03.00–06.00), or during morning (09.00–12.00) and afternoon (15.00–18.00) monitoring periods.
• 3 The greatest movements of radio‐tracked crayfish occurred within 2 days of release. After this time, periods of residence were interspersed by movements to new locations, interpreted as establishment of ephemeral home areas. It is suggested that the initial large movements were the result of a ‘fright response’ following capture.
• 4 Movements varied widely between individuals, some moving more than 300 m in 10 days, while others showed little movement over an equivalent time period. Mean (±SE) daily movements were 4.6 ± 3.0 m for males and 1.5 ± 1.0 m for females. Although crayfish often used specific home sites for in excess of 7 days, displaced animals did not return to home sites.
• 5 The total distances travelled and the mean distance travelled per day by individual radio‐tagged crayfish did not differ significantly between upstream or downstream directions or between males and females. This was also the case for marked crayfish used in mark‐recapture studies.
• 6 Positive correlations between distance moved per day and size (carapace length) were found for downstream movements by male and female crayfish, but not for upstream movements.
• 7 Some preliminary observations of the response of crayfish to flood events suggested that these could be catastrophic with two out of five tracked crayfish found dead after a high stream‐discharge event.

     

Self-organisation in streams: the relationship between movement behaviour and body condition in a headwater salamander

1. When movement behaviour is correlated with traits affecting fitness, it may affect population performance directly, independent of extrinsic habitat conditions. 2. In a previous 3‐year, capture–recapture study, upstream movement by the salamander Gyrinophilus porphyriticus compensated for low reproduction in the upper 500 m of Merrill Brook, a first‐order stream in northern New Hampshire (U.S.A.). This immigrant subsidy resulted from excess reproduction in the downstream section (i.e. the lower 500 m of stream length) and from consistently upstream‐biased movement by salamanders. Reproduction in the two stream sections was positively correlated with mean body condition. Using 6 years of capture–recapture data, this study examines whether the movement behaviour of G. porphyriticus is related to body condition and thereby directly influences mean body condition and reproduction in the two sections of Merrill Brook. 3. Upstream‐biased movement and greater mean body condition in the downstream section were consistent across 6 years of data collection. In Merrill Brook and four other streams, however, individuals with high body condition were more likely to move upstream and low‐condition individuals were more likely to move downstream. Movement direction was unrelated to the size, sex and initial location of individuals. Body condition was positively related to growth rate, further supporting its link to reproductive potential, and positively autocorrelated through time in individuals that moved. 4. Results of this 6‐year study suggest that the movement behaviour of G. porphyriticus partially compensated for environmental factors differentiating mean body condition and reproduction along Merrill Brook and illustrate the potential for this form of self‐organisation to occur in linear habitats such as streams and rivers.     

Partial migration in a landlocked brown trout population

Population densities of landlocked lake‐migratory brown trout Salmo trutta were estimated in two distinct lotic sections, separated by a lentic segment, in the Greåna River, Sweden, and individual growth and habitat use were monitored for 835 tagged brown trout from September 1998 to June 2000. Residency dominated in the upstream section where density of 0+ and 1+ year brown trout was low and growth rate high. In contrast, >90% of the brown trout that migrated to the lake originated from the downstream section, where density was high and growth rate low. For ≥2+ year individuals, growth rate was similar between the two stream sections, but densities were higher in the upstream than in the downstream section. Lake‐migrants had higher growth rates than non‐migrants (residents) during the autumn of both years. From September to May, migrants increased their body mass by >35%, whereas non‐migrants increased by <5%. Approximately 70% of the brown trout moved <10 m and <2% moved between the two stream sections, indicating that the lentic habitat might function as a barrier for juveniles. Differences in migratory behaviour, density and growth between the upstream and the downstream section might indicate that environmental factors influence the decision to migrate. It cannot be excluded, however, that the observed differences are genetically programmed, selected by migration costs that favour migratory behaviour downstream and residency upstream.     

Winter movements and activity of signal crayfish Pacifastacus leniusculus in an upland river,determined by radio telemetry

Radio-telemetry was used to study the late autumn and winter movements of twenty adult signal crayfish Pacifastacus leniusculus (32.9–63.8 mm carapace length) an introduced exotic crayfish species, in the upland River Wharfe, northern England. The distances moved during the study varied greatly between individuals (0–328 m). Movements were generally sporadic; crayfish would remain in one position for several weeks and make occasional movements to new locations. Total distances travelled, linear range and ranging area did not differ significantly between males and females. The distance travelled in upstream and downstream directions did not differ significantly and there was no correlation between distance travelled and crayfish size. Several high flow events occurred during the study, but these did not cause any mortality or apparent displacement of crayfish downstream, suggesting that this is not a significant factor in downstream dispersal or mortality of adults of this invasive crayfish species in winter. A marked reduction in large-scale movements occurred in mid-December which coincided with a decline in water temperature. There was a less distinct pattern in local activity which was strongly correlated with water temperature and varied before and after mid-December.     

Pāteke (Anas chlorotis) population trends in response to predator control on Great Barrier Island and Northland,New Zealand

Pāteke, brown teal (Anas chlorotis) were until recently restricted to two key strongholds in northern New Zealand: Great Barrier Island and eastern Northland. In 2000, we applied predator control at two sites within the strongholds. We analysed three decades of summer pāteke flock count data collected at ‘trapped’ and ‘untrapped’ locations to assess numerical pāteke response to predator control. Using piecewise regression, we found that Northland pāteke at trapped sites increased from 130 individuals before predator control, to 341 by 2015. Conversely, pāteke in untrapped areas in Northland remain low. Compared with the Northland trapped site, there was a slower rate of population increase in the predator treated site at Okiwi on Great Barrier Island; 286 individuals at trapped sites before predator control and 390 individuals in 2015. Pāteke numbers at untrapped sites on Great Barrier Island also increased, from 214 to 316 individuals. Cause of death analyses confirm that predation is a significant factor at trapped sites in Northland (87% of pāteke deaths) and Okiwi (56% of deaths), with starvation accounting for an additional 16% of identified causes of death at Okiwi. Access to sufficient food sources may be limiting at Okiwi, but overall the provision of predator control has benefitted pāteke populations.     

Assessment of lake sturgeon spawning stocks using fixed-location, split-beam sonar technology

Fixed‐location, split‐beam sonar technology was used successfully to identify adult lake sturgeon Acipenser fulvescens as they moved upstream and downstream for spawning in the Sturgeon River, Michigan, May–June 2004. A Hydroacoustic Technology Inc. Model 241 Split‐Beam Echo Sounder operating at 200 kHz and a single 4 × 10° elliptical‐beam transducer with a near field range of 1.7 m set perpendicular to the river flow was used. Data collected from migrating lake sturgeon included direction of movement, swimming speed, range from transducer, time and date of passage, and target strength. The spawning population of lake sturgeon was estimated to be at 350–400 fish, with almost equal numbers of fish seen moving upstream as downstream. Most fish were recorded moving within the mid‐section of the river, 1.5–1.65 m deep, and swimming speeds upstream were slower than those for downstream moving fish. These results show that spilt‐beam sonar can be applied to lake sturgeon assessments, without the stress of actually handling these large, pre‐spawning fish.     

Pattern of movements of adult Barbus haasi in a small Mediterranean stream

Most adult Barbus haasi , at a 1950 m-long site in Vallvidrera creek, were highly sedentary and resided within a home range <20 m (32 m²), while a small group were more mobile. On successive sampling occasions, between 52·3 and 64·9% of fish were recaptured in the same 10-m-long section in which they had previously been captured. Movements over long distances were infrequent, and only 5·6% of the fish moved >100 m. The movement pattern of the population was seasonally stable, although the mean distances were slightly greater in summer because of the medium-range movements of a few individuals. Overall, upstream and downstream movements were equally common but a significant downstream movement occurred in spring. The size of the fish did not influence the movement rate. Fish inhabiting those sections of the stream with greater depth, slower current and more cover had a lower movement rate than fish occupying shallower, exposed sections. The restricted movement of B. haasi could increase the survival of fish by increasing the probability of staying in the remaining pools during summer dry-out, and may therefore be of adaptive significance.     

Hypoxic blackwater event severely impacts Murray crayfish (Euastacus armatus) populations in the Murray River,Australia

Prolonged flooding in 2010/11 ended a decade of drought and produced a large‐scale hypoxic blackwater event across the southern Murray‐Darling Basin, Australia. The hypoxic conditions caused fish kills and Murray crayfish Euastacus armatus to emerge from the water onto the river banks to avoid the poor water quality. This study examined the medium‐term impact of this blackwater event on Murray crayfish populations in the Murray River, where approximately 1800 km of the main channel were affected by hypoxia. Murray crayfish populations were surveyed in July 2012, along a 1100‐km section of the Murray River at 10 sites affected by hypoxic blackwater and six sites that were not affected, and data were compared with surveys of the same sites undertaken in July 2010, four months before the hypoxic blackwater event (before‐after‐control‐impact experimental design). Murray crayfish abundance in 2012 (post‐blackwater) was significantly lower at blackwater affected sites (81% reduction from 2010), but not at non‐affected sites. The hypoxic blackwater impacted Murray crayfish of both sexes and all size‐classes in a similar manner. The results demonstrate that prolonged periods of hypoxia can markedly impact populations of the long‐lived and slow‐growing Murray crayfish despite the species ability to emerge from hypoxic water. The findings highlight important challenges for the management of both the recreational fishery for this species and riverine flows in relation to hypoxic blackwater events.     

Effects of an invasive crayfish on the littoral macroinvertebrates of large boreal lakes are habitat specific

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Flight activity of insects along a mountain stream: is directional flight adaptive?

1. Flight activity of Trichoptera, Plecoptera and Ephemeroptera was studied by sticky trapping for 12 months at five sites along a New Zealand mountain stream. Over 19 000 insects were captured by the traps, which were located in forest and grassland reaches, including a reach with intermittent flow.
2. Most species occurred predominantly in forest or grassland, although some were trapped throughout the stream. Longitudinal distributions of adults and their larvae were strongly correlated.
3. Flight periods of 24 caddisflies, three mayflies and four stoneflies ranged from 2 to 12 months. Six species were trapped in all months and 17 (55%) in more than 5 months.
4. The most abundant forest-dwelling caddisfly species were over-represented on the downstream sides of sticky traps located in, and immediately below, forest indicating a majority was flying upstream. Upstream flight compensates for downstream drift of larvae and should maximize the likelihood that forest-dwelling species will locate preferred habitat for egg, larval and/or adult development. Unlike the caddisflies, the stonefly Spaniocerca zelandica was over-represented on the upstream sides of traps, suggesting that some adults may float or fly downstream following emergence.
5. In contrast to forest-dwelling species, only one common caddisfly ( Oxyethira albiceps ) was over-represented on the downstream sides of traps at grassland sites. Unlike the forest-dwelling species, most species taken at the downstream sites probably came from a variety of sources, including a nearby stream.     

Effects of sand sedimentation on the macroinvertebrate fauna of lowland streams: are the effects consistent?

1. In lowland streams sand sedimentation can produce sand slugs: very slow moving, discrete volumes of sand that are created episodically. Hypothetically, such sedimentation causes losses of habitat and fauna but little is known about the effects of sand slugs. In south‐eastern Australia sand slugs are widespread, especially in streams with granitic catchments. 2. This study in north‐central Victoria was centred on three streams that rise in the Strathbogie Ranges and flow out onto lowland plains, where they contain sand slugs. Below the sand slugs, the streams are slow‐flowing ‘chains of ponds’ with a clay streambed. To correct for potential upstream‐downstream confounding of comparisons, two unsanded, nearby streams were included as potential controls. Habitat measurements and faunal samples were taken in Spring 1998, from three sites in the sand slug and three sites in the clay‐bed, downstream sections of each impacted stream, as well as from three sites in commensurate upstream and downstream sections of the control streams. 3. The sand‐slugged sections had significantly higher velocities, shallower depths and less coarse woody debris than the unsanded downstream sections. Macroinvertebrate taxon richness and abundance showed some significant differences between the sand and clay sections compared with commensurate up‐ and downstream locations in the control streams. Effects were not uniform, however. In Castle Creek there were no significant differences between the sand and clay sections, in Pranjip‐Ninemile Creek taxon richness and abundances were higher in sand than in the clay sections, whereas in Creightons Creek the ‘expected’ results of lower taxon richness and abundance in the sand were found. 4. Of the 40 most common taxa, only eight provided a clear signal related to sand and, of these, one (Slavina sp.) occurred only in the sand slugs, whereas the other seven had significantly higher numbers in the clay sections. Of these taxa, three were ostracods, three were chironomids and one was a tubificid oligochaete, all taxa that live in detritus‐rich environments. Overall faunal composition did not show a clear distinction though, between sandy and clay sites. The sand slug community of Creightons Creek was very different from the other communities in all of the streams. There were clear differences in community composition between the sand‐affected and the control streams, even for downstream, clay sections, suggesting they cannot act as controls for the impacted sections of the sand‐slugged streams. 5. Differences between streams within categories (particularly between sand‐slugged streams) and between sites in the same section of stream accounted for most of the variability in species richness and the abundances of each of the 40 most common taxa. That finding was repeated when data were examined at the family level, for both numbers of families per sample and collated lists of families occurring across sites. These results strongly suggest that the effects of sedimentation by sand slugs do not overwhelm background variation in macroinvertebrate density and diversity. Overall the results suggest that many taxa may respond individually, and that there is much variation between sand‐affected streams even over relatively small (approximately <10 km) spatial scales.     

Assessment of a vertical slot fishway in south‐eastern Australia designed to pass numerous species and size classes of fish

In the Barwon River, Australia, a tidal barrage formed a major impediment to fish movement so in 2013 a vertical slot fishway was installed. The assessment of fishways on tidal barriers is rare in Australia so to ensure the fishway was achieving its ecological objective (i.e. successfully passing the target size range of fish of 20–400 mm total length), fish were trapped at the entrance and exit on 12 occasions and the species composition, abundance and length of fish at the two locations were compared. Additionally, a section of the river downstream of the fishway was sampled to ensure fishway trapping accurately reflected the species composition wanting to use the fishway to move upstream. Eighteen species and 69,246 individual fish were caught in the fishway traps. Catch rates between locations did not differ for Common Galaxias (Galaxias maculatus) or Australian Smelt (Retropinna semoni), although species‐specific catch rates were lower at the exit for Flat‐headed Gudgeon (Philypnodon grandiceps), Tupong (Pseudaphritis urvillii) and Yellow‐eye Mullet (Aldrichetta forsteri). Length distribution between locations only differed for Australian Smelt with small fish under‐represented at the exit location (<25 mm total length). Eight species of fish were collected downstream of the fishway that were not collected in it; however, all of these were estuarine dependent except the non‐native Common Carp (Cyprinus carpio). Our results indicate that vertical slot fishways are a suitable design for improving river connectivity at a low head, tidal barrages in south‐eastern Australia. The study reiterates the importance of reinstating connectivity for species with obligate marine/freshwater migratory life history traits, and the indirect benefits of increased productivity made available to upstream areas.     

Translocation of the Eastern Bristlebird 1: radio‐tracking of post‐release movements

Summary Translocating birds to a new area of habitat to restore or supplement depleted populations may pose a significant threat to the translocated individuals. While for many species, translocated individuals appear to move larger distances than resident animals, species with poor dispersal capacity may be restricted in movements and translocation methods may need to accommodate differences in movements to ensure success. In this study, designed to provide insights to inform our broader programme of translocations in New South Wales, Australia, we investigated post‐release movements in the endangered, semi‐flightless Eastern Bristlebird (Dasyornis brachypterus). We predicted that movements would be minimal, with few differences between males and females, similar to published information for a resident un‐manipulated population. Following the release of 45 birds at a host location at Jervis Bay, NSW, over a 3‐year programme, we followed individuals for up to 2 weeks using radio‐tracking. The translocated birds had larger maximum movements and moved through much larger home ranges than non‐translocated individuals from the resident population. Translocated birds moved 300 m further after release when conspecifics were present. Males moved further than females and tended to have larger home ranges, although average daily displacement did not differ. We concluded that the semi‐flightlessness of the species does not result in minimal movements. Release at a small number of locations in the new habitat was considered appropriate for the species, as animals seem to move enough to find new unoccupied areas in a relatively short period. This work provided us with increasing confidence to continue with further translocations.     

Benthic invertebrate assemblage change following dam removal in a Wisconsin stream

Small dams (height <10 m) have transformed stream networks across the United States. Shopiere Dam was removed from Turtle Creek, a fourth order stream in Southeastern Wisconsin in the fall of 1999. We sampled three sites (upstream of the impoundment, immediately below the dam, and farther downstream) before and after dam removal to identify changes in the invertebrate assemblage following removal. Prior to removal, upstream and downstream sites had similar taxonomic composition. In contrast the dam site had more taxonomic variation. The upstream, dam and downstream sites responded differently to dam removal in analyses of diversity, functional feeding groups, and invertebrate composition. Upstream at the reference site, changes in functional feeding group composition appeared to be associated with a decrease in silt coverage. At the dam site, taxonomic composition changed following dam removal, however diversity and functional feeding groups remained similar. At the downstream site, the invertebrate assemblage remained similar in all analyses. Our observations indicate that the effects of dam removal were not uniform through the stream, rather each site responded in a different way.     

Positive and negative selection on noncoding DNA close to protein-coding genes in wild house mice

During the past two decades, evidence has accumulated of adaptive evolution within protein-coding genes in a variety of species. However, with the exception of Drosophila and humans, little is known about the extent of adaptive evolution in noncoding DNA. Here, we study regions upstream and downstream of protein-coding genes in the house mouse Mus musculus castaneus, a species that has a much larger effective population size (N(e)) than humans. We analyze polymorphism data for 78 genes from 15 wild-caught M. m. castaneus individuals and divergence to a closely related species, Mus famulus. We find high levels of nucleotide diversity and moderate levels of selective constraint in upstream and downstream regions compared with nonsynonymous sites of protein-coding genes. From the polymorphism data, we estimate the distribution of fitness effects (DFE) of new mutations and infer that most new mutations in upstream and downstream regions behave as effectively neutral and that only a small fraction is strongly negatively selected. We also estimate the fraction of substitutions that have been driven to fixation by positive selection (α) and the ratio of adaptive to neutral divergence (ω(α)). We find that α for upstream and downstream regions (～ 10%) is much lower than α for nonsynonymous sites (～ 50%). However, ω(α) estimates are very similar for nonsynonymous sites (～ 10%) and upstream and downstream regions (～ 5%). We conclude that negative selection operating in upstream and downstream regions of M. m. castaneus is weak and that the low values of α for upstream and downstream regions relative to nonsynonymous sites are most likely due to the presence of a higher proportion of neutrally evolving sites and not due to lower absolute rates of adaptive substitution.     

Does Biofilm Contribute to Diel Cycling of Zn in High Ore Creek, Montana?

Concentrations of metals cycle daily in the water column of some mining-impacted streams in the Rocky Mountains of the western USA. We hypothesized that biofilm in High Ore Creek, Montana, USA, sorbs and releases Zn on a diel cycle, and this uptake-and-release cycle controls the total and dissolved (0.45-μm filtered) Zn concentrations. We collected water samples from three sites (upstream, middle and downstream at 0, 350 and 650 m, respectively) along a 650-m reach of High Ore Creek during a 47-h period in August 2002 and from the upstream and downstream sites during a 24-h period in August 2003; we also collected biofilm samples at these sites. In 2002 and 2003, total and dissolved Zn concentrations did not exhibit a diel cycle at the upstream sampling site, which was ~30 m downstream from a settling pond through which the creek flows. However, total and dissolved Zn concentrations exhibited a diel cycle at the middle and downstream sampling sites, with the highest Zn concentrations occurring at dawn and the lowest Zn concentrations occurring during late afternoon (>2-fold range of concentrations at the downstream site). Based on (1) concentrations of Zn in biofilm at the three sites and (2) results of streamside experiments that demonstrated Zn uptake and release by na?ve biofilm during the light and dark hours of a photocycle, respectively, we conclude that Zn uptake in photosynthetic biofilms could contribute a large percentage to the cycling of Zn concentrations in the water column in High Ore Creek.