Supramolecular organization of fucoxanthin–chlorophyll proteins in centric and pennate diatoms

Fucoxanthin–chlorophyll proteins (FCP) are the major light-harvesting proteins of diatom algae, a major contributor to marine carbon fixation. FCP complexes from representatives of centric (Cyclotella meneghiniana) and pennate (Phaeodactylum tricornutum) diatoms were prepared by sucrose gradient centrifugation and studied by means of electron microscopy followed by single particle analysis. The oligomeric FCP from a centric diatom were observed to take the form of unusual chain-like or circular shapes, a very unique supramolecular assembly for such antennas. The existence of the often disputed oligomeric form of FCP in pennate diatoms has been confirmed. Contrary to the centric diatom FCP, pennate diatom FCP oligomers are very similar to oligomeric antennas from related heterokont (Stramenopila) algae. Evolutionary aspects of the presence of novel light-harvesting protein arrangement in centric diatoms are discussed.     

On microalgal settlements and the sluggish development of marine biofouling in Port Blair waters, Andamans

Settlement of microalgae was investigated on Perspex, aluminium and zinc coupons immersed in Port Blair Bay waters for over 3 months. Commencement of fouling was exceptionally slow, and few microalgae were found until 14 days. Settlement occurred thereafter, and 47 microalgal species contributed to the fouling. The dominant forms belonged to the genera Navicula and Nitzschia, whereas Coscinodiscus eccentricus, Gyrosigma balticum and Trichodesmium erythraeum also accounted for high proportions of the settlements. The dominance of Nitzschia sigma was particularly marked on zinc coupons, suggesting an ability by the organism to resist toxicity. Settlement of both centric and pennate diatoms was observed in the early and mid periods, and absolute dominance of the pennate diatoms subsequently. The fouling mass was low even after 103 days, and it is speculated that strong ultraviolet radiation might be the prime reason for the sluggish development of marine biofouling in these oceanic island waters.     

Biotic crises and stages of radiolarian evolution in the Phanerozoic

The questions of ecology and taphonomy of radiolarians are reviewed and reexamined. In Recent oceans and seas, the major part of the “radiolarian rain” (dead individuals) comes from the layer of the water column which is not deeper than 500 m; therefore, the bottom radiolarian thanatocenoses and taphocenoses are formed in all oceanic zones, including the coastal and central oligotrophic regions of oceans. However, radiolarians should not be regarded as indicators of exclusively deepwater oceanic conditions. The crucial moments in the evolution of radiolarians at the major Phanerozoic boundaries are recognized. A dynamic model of cyclic development of radiolarians in the Phanerozoic is proposed and four phases and nine stages in their evolution are recognized. The absence of an outburst of radiolarian biodiversity in the Holocene is shown. Many great extinctions of radiolarians occurred at the boundaries between seasons of galactic years.     

The use of outdoor phytoplankton continuous cultures to analyse factors influencing species selection

Natural phytoplankton populations have been grown in outdoor continuous cultures at three dilution rates (D = 0.5, 0.25, and 0.1 · day^?1) under nitrogen (N) or silicon (Si) limitation and two light intensities. At a high specific nutrient flux (high dilution rate) under N limitation an assemblage of primarily small, fast growing centric diatoms such as Skeletonema costatum (Grev.) Cleve and Chaetoceros spp. dominated with a low percentage of flagellates. At a low specific nutrient flux, a mixture of larger, slower growing centric diatoms, small flagellates, and pennate diatoms was obtained. Similar trends were observed under silicate limitation. Decreasing the light intensity at the lowest dilution rate selected for an assemblage similar to that observed at the high dilution rate and high light intensity.The results of these competition experiments suggest that specific nutrient flux (dilution rate) is an important factor in determining between group dominance (e.g., centric and pennate diatoms and small flagellates). Successful competitors representing broad phytoplankton groups can be arranged along a resource gradient of specific nutrient flux (dilution rate), with groups such as centric and pennate diatoms, represented as high and medium flux species, respectively.     

THE EVOLUTION OF ELONGATE SHAPE IN DIATOMS1

Diatoms have been classified historically as either centric or pennate based on a number of features, cell outline foremost among them. The consensus among nearly every estimate of the diatom phylogeny is that the traditional pennate diatoms (Pennales) constitute a well‐supported clade, whereas centric diatoms do not. The problem with the centric–pennate classification was highlighted by some recent analyses concerning the phylogenetic position of Toxarium, whereby it was concluded that this “centric” diatom independently evolved several pennate‐like characters including an elongate, pennate‐like cell outline. We performed several phylogenetic analyses to test the hypothesis that Toxarium evolved its elongate shape independently from Pennales. First, we reanalyzed the original data set used to infer the phylogenetic position of Toxarium and found that a more thorough heuristic search was necessary to find the optimal tree. Second, we aligned 181 diatom and eight outgroup SSU rDNA sequences to maximize the juxtapositioning of similar primary and secondary structure of the 18S rRNA molecule over a much broader sampling of diatoms. We then performed a number of phylogenetic analyses purposely based on disparate sets of assumptions and found that none of these analyses supported the conclusion that Toxarium acquired its pennate‐like outline independently from Pennales. Our results suggest that elongate outline is congruent with SSU rDNA data and may be synapomorphic for a larger, more inclusive clade than the traditional Pennales.     

On microalgal settlements and the sluggish development of marine biofouling in Port Blair waters,Andamans

Settlement of microalgae was investigated on Perspex®, aluminium and zinc coupons immersed in Port Blair Bay waters for over 3 months. Commencement of fouling was exceptionally slow, and few microalgae were found until 14 days. Settlement occurred thereafter, and 47 microalgal species contributed to the fouling. The dominant forms belonged to the genera Navicula and Nitzschia, whereas Coscinodiscus eccentricus, Gyrosigma balticum and Trichodesmium erythraeum also accounted for high proportions of the settlements. The dominance of Nitzschia sigma was particularly marked on zinc coupons, suggesting an ability by the organism to resist toxicity. Settlement of both centric and pennate diatoms was observed in the early and mid periods, and absolute dominance of the pennate diatoms subsequently. The fouling mass was low even after 103 days, and it is speculated that strong ultraviolet radiation might be the prime reason for the sluggish development of marine biofouling in these oceanic island waters.     

Seasonal dynamics of phytoplankton in two warm temperate reservoirs: association of taxonomic composition with temperature

Variations in phytoplankton composition were observed over 2.7years in two warm temperate reservoirs in north central Texas,Joe Pool Lake (JPL) and Eagle Mountain Lake (EML), and analysedin relation to temperature, light, dissolved nutrients, sestonnutrient ratios and hydrological variables. The dominant variationsin both phytoplankton composition and environmental variableswere seasonal and strongly related to the annual temperaturecycle. Phytoplankton composition was annually periodic, withfilamentous cyanobacteria, pennate diatoms and chlorophytesdominant in summer, while other chlorophytes, centric diatoms,cryptophytes, dinoflagellates and other flagellates either dominatedin other seasons or remained abundant year round. The seasonaldynamics of several major taxa could be represented by a nicheresponse model based on temperature alone, although seasonalvariations in many environmental variables likely contributedto variation in phytoplankton composition. Such seasonal variationsdominated these data, but interannual variation in phytoplanktoncomposition and environmental variables also appeared to resultfrom dry weather late in the study.     

The evolution of the diatoms (Bacillariophyta). I. Origin of the group and assessment of the monophyly of its major divisions

The diatoms are one of the best characterised algal groups. Despite this, little is known of the evolution of the group from the earliest cell to the myriad of taxa known today. Relationships among taxa at the family or generic level have been recognised in some diatoms. However, relationships at higher taxonomic levels are poorly understood and have often been strongly influenced by the first appearances of key taxa in the fossil record. An independent assessment of relationships among the diatoms at these higher taxonomic levels has been made using rRNA sequence data to infer phylogenetic relationships. In this paper we present an analysis of 18S rRNA data from several chosen centric, araphid and raphid pennate taxa. The phylogenetic inferences from these 18S rRNA sequences are supported by evidence from the fossil record and evidence from ontogenetic data. Ribosomal RNA data indicate that both the centric and araphid pennate lineages may not be monophyletic.     

RpoA: a useful gene for phylogenetic analysis in diatoms

The aim of this study was to compare the usefulness of two chloroplast-encoded genes (rpoA and rbcL) and the nuclear-encoded small subunit (SSU) ribosomal RNA for reconstructing phylogenetic relationships among diatoms at lower taxonomic levels. To this end, the rpoA and rbcL genes for selected centric and pennate diatoms were sequenced. The new rpoA and rbcL sequences, and an existing nuclear-encoded SSU rRNA data set, were subjected to weighted/unweighted parsimony, maximum likelihood, minimum evolution, and Bayesian analyses. All of the tree-building methods employed showed, based on the support values, that the rpoA gene was the most useful, relative to the rbcL and SSU rRNA genes, in determining phylogenetic relationships among the sampled diatoms. The support values for the relationships among the pennate lineages were, in many instances, greater in the rpoA trees than in the SSU rRNA trees. These results suggest that rpoA might be of value in determining phylogenetic relationships among pennate lineages.     

A checklist of algal species found in the East Siberian Sea in May 1987

Summary A checklist of microalgae found in sea-ice in the East Siberian Sea in May 1987 has been compiled. A total of 122 taxa have been identified, consisting of 101 taxa in 18 genera of pennate diatoms, 14 taxa in 8 genera of centric diatoms, 4 taxa in 3 genera of dinoflagellates (including Ebria sp.), and 2 taxa in 1 genus of chrysophytes (silicoflagellates); choanoflagellates (Craspedomonadales) were found in one sample.     

BORON AS A GROWTH REQUIREMENT FOR DIATOMS1

A boron requirement has been shown for 12 species of marine pennate diatoms, 4 species of marine centric diatoms, and S freshwater diatom species. It can be concluded that boron is essential for the growth of most, probably all, diatoms. It is much easier to demonstrate a requirement for the marine species than for the freshwater species. Some species of marine algal flagellates also require boron for growth; others apparently do not.     

AUXOSPORE FORMATION AND THE MORPHOLOGY OF THE INITIAL CELL OF THE MARINE ARAPHID DIATOM GEPHYRIA MEDIA (BACILLARIOPHYCEAE)1

Recent studies have led to a rapid increase in knowledge of auxospore formation in diatoms. However, these studies have been limited to centric and raphid pennate diatoms, and there is still very little information for the araphid pennate diatoms. Using LM and SEM, we studied the development of the auxospore and the initial cell of the marine epiphytic diatom Gephyria media Arnott. Auxospores were bipolar and curved in side view, as in many other pennate diatoms. SEM revealed many transverse perizonial bands, all of which were incomplete rings. There was an elongate, sprawling, silicified structure beneath the ventral suture of the transverse perizonial bands. This structure is presumably equivalent to the longitudinal perizonial band in other pennate diatoms, although we could not determine the homologous relationship between the two features. Scales were found both in the inner wall of the perizonium and around the primary perizonial bands. The presence or absence of scales may be of phylogenetic significance in diatoms, only during the final stages of auxospore formation because scales are found in early spherical stages. The distinctive finger‐like structures observed throughout all stage of G. media have not been observed before in the other diatom taxa.     

Phytoplankton across Tropical and Subtropical Regions of the Atlantic,Indian and Pacific Oceans

We examine the large-scale distribution patterns of the nano- and microphytoplankton collected from 145 oceanic stations, at 3 m depth, the 20% light level and the depth of the subsurface chlorophyll maximum, during the Malaspina-2010 Expedition (December 2010-July 2011), which covered 15 biogeographical provinces across the Atlantic, Indian and Pacific oceans, between 35°N and 40°S. In general, the water column was stratified, the surface layers were nutrient-poor and the nano- and microplankton (hereafter phytoplankton, for simplicity, although it included also heterotrophic protists) community was dominated by dinoflagellates, other flagellates and coccolithophores, while the contribution of diatoms was only important in zones with shallow nutriclines such as the equatorial upwelling regions. We applied a principal component analysis to the correlation matrix among the abundances (after logarithmic transform) of the 76 most frequent taxa to synthesize the information contained in the phytoplankton data set. The main trends of variability identified consisted of: 1) A contrast between the community composition of the upper and the lower parts of the euphotic zone, expressed respectively by positive or negative scores of the first principal component, which was positively correlated with taxa such as the dinoflagellates Oxytoxum minutum and Scrippsiella spp., and the coccolithophores Discosphaera tubifera and Syracosphaera pulchra (HOL and HET), and negatively correlated with taxa like Ophiaster hydroideus (coccolithophore) and several diatoms, 2) a general abundance gradient between phytoplankton-rich regions with high abundances of dinoflagellate, coccolithophore and ciliate taxa, and phytoplankton-poor regions (second principal component), 3) differences in dominant phytoplankton and ciliate taxa among the Atlantic, the Indian and the Pacific oceans (third principal component) and 4) the occurrence of a diatom-dominated assemblage (the fourth principal component assemblage), including several pennate taxa, Planktoniella sol, Hemiaulus hauckii and Pseudo-nitzschia spp., in the divergence regions. Our findings indicate that consistent assemblages of co-occurring phytoplankton taxa can be identified and that their distribution is best explained by a combination in different degrees of both environmental and historical influences.     

Glycerol 1,2-cyclic phosphate in centric diatoms. Observation by 31P NMR in vivo, isolation, and structural determination

We have isolated and identified glycerol 1,2-cyclic phosphate as the compound responsible for a unique prominent resonance at 19.1 ppm in the 31P NMR spectrum in vivo of four species of centric diatoms, where it is responsible for 15 to 30% of the total signals from organophosphates. This appears to be the first observation of this compound as a major metabolite. It was not detectable in nine other species of algae, including four species of pennate diatoms.     

Spatial and temporal dynamics of phytoplankton communities along a regulated river system, the Nakdong River, Korea

The longitudinal distribution and seasonal fluctuation of phytoplankton communities was studied along the middle to lower part of a regulated river system (Nakdong River, Korea). Phytoplankton biomass decreased sharply in the middle part of the river (182 km upward the estuary dam), and then increased downstream reaching a maximum at the last sampling station (27 km upward the estuary dam). In contrast, there was little downstream fluctuation in species composition, irrespective of pronounced differences in nutrient concentrations (TN, TP, NO₃, NH₄, PO₄) as well as in algal biomass. In the main river channel, small centric diatoms (Stephanodiscus hantzschii, Cyclotella meneghiniana) and pennate diatoms (Synedra, Fragilaria, Nitzschia) were dominant from winter to early spring (November–April). A mixed community of cryptomonads, centric and pennate diatoms, and coenobial greens (Pediastrum, Scenedesmus) was dominant in late spring (May–June). Blue-green algae (Anabaena, Microcystis, Oscillatoria) were dominant in the summer (July–September). A mid-summer Microcystis bloom occurred at all study sites during the dry season, when discharge was low, though the nutrient concentration varied in each study site. Nutrients appeared everywhere to be in excess of algal requirement and apparently did not influence markedly the downstream and seasonal phytoplankton compositional differences in this river.     

Discrimination of eukaryotic phytoplankton cell types from light scatter and autofluorescence properties measured by flow cytometry

Flow cytometric methods for recognizing several groups of eukaryotic marine phytoplankton were tested using 26 laboratory cultures. Each culture was divided into three aliquots, and these samples were analyzed for 1) Coulter volume; 2) light scatter (magnitude and polarization properties of forward scattered light and magnitude of right-angle scattered light) and autofluorescence emission (phycoerythrin and chlorophyll); and 3) autofluorescence excitation (by 488 nm and 515 nm light). Three kinds of cells could be easily distinguished from others in the culture collection: 1) The two cryptophytes and the rhodophyte had high phycoerythrin/chlorophyll ratios; 2) the two coccolithophores depolarized forward scattered light; and 3) the two pennate diatoms scattered only a relatively small amount of light in the forward direction compared with that at right angles. Mean chlorophyll fluorescence excited by blue light relative to that excited by green light was highest in the four chlorophytes, but there was overlap between some of these and some other kinds of cells. Unresolved cell types included centric diatoms, dinoflagellates, and naked coccolithophores. Forward light scatter and Coulter volume were closely related (except for the pennate diatoms) over a range of about 0.01 to 30 pL (equivalent spherical diameter about 3 to 40 microns), according to a logarithmic function.     

Quantification of diatoms in biofilms: standardisation of methods

Benthic diatoms, which often dominate marine biofilms are mostly pennate along with a few centric species that have an attached mode of life. Even though the range of diatoms in biofilms is diverse, their ecology is poorly understood because of the difficulty in sampling and enumeration. Scraping or brushing are the traditional methods used for removal of diatoms from biofilms developed on solid substrata. The method of removal is the most critical step in enumerating the biofilm diatom community structure. In this study, a nylon brush and ceramic scraper were used as tools for the removal of diatoms from 1 - 4-day-old biofilms developed on fibreglass coupons and glass microscope slides. Standardisation of methods showed that the sample volume used in the analyses had the least influence on the quantification, whereas the method of removal was critical. The nylon brush was more efficient at recovering diatoms compared to a ceramic scraper. Direct microscopic enumeration of the community in the case of glass slides indicated that scraping resulted in between 30-50% underestimation. Heterogeneity in diatom community structure between replicate samples is one possible reason for such underestimation.     

Quantification of diatoms in biofilms: Standardisation of methods

Abstract

Benthic diatoms, which often dominate marine biofilms are mostly pennate along with a few centric species that have an attached mode of life. Even though the range of diatoms in biofilms is diverse, their ecology is poorly understood because of the difficulty in sampling and enumeration. Scraping or brushing are the traditional methods used for removal of diatoms from biofilms developed on solid substrata. The method of removal is the most critical step in enumerating the biofilm diatom community structure. In this study, a nylon brush and ceramic scraper were used as tools for the removal of diatoms from 1 – 4-day-old biofilms developed on fibreglass coupons and glass microscope slides. Standardisation of methods showed that the sample volume used in the analyses had the least influence on the quantification, whereas the method of removal was critical. The nylon brush was more efficient at recovering diatoms compared to a ceramic scraper. Direct microscopic enumeration of the community in the case of glass slides indicated that scraping resulted in between 30–50% underestimation. Heterogeneity in diatom community structure between replicate samples is one possible reason for such underestimation.     

Phytoplankton of four rivers,the Tyne,Wear, Tees and Swale

An account is given of the phytoplankton in four relatively fast-flowing rivers in north-east England associated with a water transfer scheme. The total number of live cells (or units) ranged from 2 × 10² to 2 × 10⁴ cells ml^–1. Input of plankton from a reservoir did not appear to influence densities at a site 25 km downstream. Diatoms formed the majority of cells in most samples, with green algae second and cryptomonads third in importance. Among the diatoms, centrics were relatively more abundant at downstream sites. The ratios of live versus dead diatoms showed marked differences with season and between centric and pennate forms.