Relative efficiency of selection methods to improve a ratio of two traits in Tribolium

Summary Three generations of upward selection for the egg mass/adult weight ratio were carried out in Tribolium castaneum. The experiment involved five lines: E — selected for increased egg mass; W — selected for decreased adult weight; R — selected for egg mass/adult weight directly; L — linear index selected with economic weights of m ₂: -m ₁ egg mass to adult weight (m ₁ and m ₂ are the means for adult weight and egg mass, respectively); NL — nonlinear index selected. Adult weight (7 days after adult emergence) and egg mass (between 7 and 11 days) were measured. The NL, E, and L lines had the greatest observed responses for the ratio; the R and W lines were not effective in improving the egg mass/adult weight ratio. It was expected that the NL line would be superior to the E, L, and R lines, and that the W line would respond the least. Observed response was significant for egg mass in the NL line, and for adult weight in the E, W, and R lines. Strong selection to increase egg mass seems to represent the optimal criterion for the ratio to be improved. The usefulness of nonlinear indices as selection criteria to improve a nonlinear trait, previously found to be optimal for a trait defined as the product of two component traits, appears to hold also for the selective improvement of the ratio of two traits. Serious limitations expected for direct selection of the ratio have been confirmed in this experiment.     

An empirical comparison of selection methods for the improvement of biomass

Summary A single generation of upward truncation selection on families with 20% selected was carried out in each of five replicates using Tribolium castaneum as the test organism. The experiment involved eight lines: N — selected for offspring number; W — selected for pupal weight; B — selected for biomass; Q — quadratic index selected; L₂₁ — linear index selected with relative economic weights of 21 offspring number to pupal weight; L₁₁ — linear index selected with relative economic weights of 11 offspring number to pupal weight; L₁₂ — linear index selected with relative economic weights of 12 offspring number to pupal weight; C — an unselected control.Biomass (weight of offspring per family), offspring number, and pupal weight were measured. No differences in response to selection were found among the linear index lines and the pupal weight line with regard to any trait analysed. Generally, response to selection in the linear index lines and pupal weight line was small for offspring number and high for pupal weight. Selection pressure on offspring number in these lines seemed to be dependent on the correlation between offspring number and pupal weight. As a result, response to selection for biomass was poor in the linear index and pupal weight selected lines. In the case of the linear indices, poor response to selection for biomass appeared to be due to the violation of the assumption of additivity of the traits included in the definition of aggregate genotype.The responses in the quadratic index, biomass, and offspring number selected lines were equal with respect to selection for biomass. The response of the quadratic index selected line was less than the responses of the biomass and offspring number selected lines for offspring number, but the response in the quadratic index line was as large as that of any other line included in the experiment and greater than the biomass and offspring number selected lines where pupal weight was the criterion.Highly significant amounts of variation were found for all traits indicating that more replicates are needed for precise evaluation of selection systems.     

Identification of Self-Incompatibility Genotypes of Apricot (<Emphasis Type="Italic">Prunus armeniaca</Emphasis> L.) by S-Allele-Specific PCR Analysis

A cDNA of 417 bp encoding an S-RNase gene, named PA S3, was isolated from apricot, Prunus aremeniaca. Nine S-alleles, S₁–S₉, were recognized by S-allele-specific PCR and confirmed by Southern blot analysis using PA S3 as probe. The S-genotypes of the six cultivars were determined and the results of self- and cross-pollination tests among the six cultivars were consistent with the predicted S-haplotypes by PCR analysis.     

Improvement of Rice Biomass Yield through QTL-Based Selection

Biomass yield of rice (Oryza sativa L.) is an important breeding target, yet it is not easy to improve because the trait is complex and phenotyping is laborious. Using progeny derived from a cross between two high-yielding Japanese cultivars, we evaluated whether quantitative trait locus (QTL)-based selection can improve biomass yield. As a measure of biomass yield, we used plant weight (aboveground parts only), which included grain weight and stem and leaf weight. We measured these and related traits in recombinant inbred lines. Phenotypic values for these traits showed a continuous distribution with transgressive segregation, suggesting that selection can affect plant weight in the progeny. Four significant QTLs were mapped for plant weight, three for grain weight, and five for stem and leaf weight (at α = 0.05); some of them overlapped. Multiple regression analysis showed that about 43% of the phenotypic variance of plant weight was significantly explained (P < 0.0001) by six of the QTLs. From F₂ plants derived from the same parental cross as the recombinant inbred lines, we divergently selected lines that carried alleles with positive or negative additive effects at these QTLs, and performed successive selfing. In the resulting F₆ lines and parents, plant weight significantly differed among the genotypes (at α = 0.05). These results demonstrate that QTL-based selection is effective in improving rice biomass yield.     

The<Emphasis Type="Italic"> Rxo1</Emphasis>/<Emphasis Type="Italic">Rba1</Emphasis> locus of maize controls resistance reactions to pathogenic and non-host bacteria

The genetic mechanism underlying six palatability properties of cooked rice and three physico-chemical traits was dissected in 66 BC₃F₂ chromosome segment substitution lines (CSSLs), using a complete linkage map in three successive years. The CSSLs showed transgressive segregation for all traits studied. Significant correlation was detected among most palatability traits. A total of 25 QTLs for the nine traits were identified on nine chromosomes, and many QTLs affecting different quality traits were mapped in the same regions. Six QTLs—qLT-8 for luster, qTD-6 and qTD-8 for tenderness, qIVOE-6 and qIVOE-8 for integrated value of organoleptic evaluation, and qAC-8 for amylose content—were repeatedly detected across the 3 years. Phenotypic values were significantly different between the recurrent parent, cultivar Asominori, and the CSSLs harboring any of the six QTL alleles across the three environments, indicating that these six QTLs were non-environment-specific and could be used for marker-assisted selection in rice quality improvement.     

Simultaneous selection for grain yield and protein percentage in backcross populations fromAvena sterilis ×A. sativa matings by using the independent culling levels procedure

Summary The method of independent culling levels was applied for simultaneous improvement in grain yield, protein percentage, and protein yield in a population of oat lines from the BC₀–BC₅ of the interspecific matingAvena sativa ×A. sterilis. Grain yield and protein percentage were subjected to selection with various combination of culling levels to give samples with 2% of the lines from the original population. — Intense selection for grain yield resulted in samples with high grain and protein yields but low protein percentage. Intense selection for protein percentage resulted in samples with high protein percentage but low grain and protein yields. The sample selected for protein yield only showed no significant difference from the recurrent parent for any trait. The recommended regime for improving protein percentage and grain and protein yields simultaneously was one that initially saved approximately 25–50% of the original population on the basis of protein percentage, and then provided intense selection for grain yield on the lines that remained. At least three backcrosses were necessary to obtain lines with high protein percentage and acceptable agronomic traits.Journal Paper No. J-11439 of the Iowa Agric. and Home Econ. Exp. Stn., Ames, IA 50011. Project No. 2447     

Heritable,De Novo Resistance to Leaf Rust and Other Novel Traits in Selfed Descendants of Wheat Responding to Inoculation with Wheat Streak Mosaic Virus

Stable resistance to infection with Wheat streak mosaic virus (WSMV) can be evolved de novo in selfing bread wheat lines subjected to cycles of WSMV inoculation and selection of best-performing plants or tillers. To learn whether this phenomenon might be applied to evolve resistance de novo to pathogens unrelated to WSMV, we examined the responses to leaf rust of succeeding generations of the rust- and WSMV-susceptible cultivar ‘Lakin’ following WSMV inoculation and derived rust-resistant sublines. After three cycles of the iterative protocol five plants, in contrast to all others, expressed resistance to leaf and stripe rust. A subset of descendant sublines of one of these, ‘R1’, heritably and uniformly expressed the new trait of resistance to leaf rust. Such sublines, into which no genes from a known source of resistance had been introgressed, conferred resistance to progeny of crosses with susceptible parents. The F₁ populations produced from crosses between, respectively, susceptible and resistant ‘Lakin’ sublines 4-3-3 and 4-12-3 were not all uniform in their response to seedling inoculation with race TDBG. In seedling tests against TDBG and MKPS races the F₂s from F₁ populations that were uniformly resistant had 3∶1 ratios of resistant to susceptible individuals but the F₂s from susceptible F₁ progenitors were uniformly susceptible. True-breeding lines derived from resistant individuals in F₂ populations were resistant to natural stripe and leaf rust inoculum in the field, while the ‘Lakin’ progenitor was susceptible. The next generation of six of the ‘Lakin’-derived lines exhibited moderate to strong de novo resistance to stem rust races TPMK, QFCS and RKQQ in seedling tests while the ‘Lakin’ progenitor was susceptible. These apparently epigenetic effects in response to virus infection may help researchers fashion a new tool that expands the range of genetic resources already available in adapted germplasm.     

Yield and biological nitrogen fixation of common bean (Phaseolus vulgaris L.) in Peru

Two field experiments were performed to evaluate the nitrogen fixation potential of twenty common bean cultivars and breeding lines during summer and winter seasons of 1986 and 1988, respectively. The ¹⁵N isotope dilution method was used to quantify N₂ fixation. The cultivars and breeding lines were variable in terms of their N₂ fixation. The cv. Caballero was very efficient, with more than 50% N derived from the atmosphere and 60–80 kg N ha^–1 fixed in both seasons. Other cultivars were less efficient, since the poorest ones derived less than 30% of their nitrogen from the atmosphere and fixed less than 20 kg N ha^–1. After additional testing the best cultivars may be used directly by the farmers for cultivation. The experiments have provided information about which genotypes may be used to breed for enhanced fixation in common bean.     

Structural variations in Vicia faba mitochondrial genome

Summary A comparative analysis of the presence of minicircular DNA CCCIB in 16 different lines and cultivars of fertile Vicia faba L. plants was conducted. It was found that copy number of CCCIB ranged from several copies per mitochondrial genome to — probably — zero, depending on cultivar or line. Fertility of plants in these cases was not altered. We chose 10 cultivars and lines among 16 analysed. Mitochondria of five cultivars and lines contained about two CCCIB molecules per one CCCIA. The sixth cultivar contained CCCIB at copy number several times lower. In the last four cultivars CCCIB could not be identified. Copy number analysis of CCC2 in ten chosen cultivars and lines revealed that in eight cases the quantitiy of CCC2 was equal to CCCIA. However, two other cultivars contained about two times lower quantity of CCC2. Parallel to that we observed an increase in quantity of one sequence homologous to CCC2, which in the first eight cultivars and lines could be found only in minor quantities. Comparative restriction analysis revealed notable rearrangement events in mitochondrial DNAs of ten cultivars and lines being investigated. We did not find any correlations between patterns of restriction fragments and copy number of CCCIB. In some cases, rearrangements in Vicia faba mitochondrial genomes caused a duplication of sequences homologous to the Zea mays coxII gene.     

Effect of enhanced CaCl2, MgSO4, and KH2PO4 on improved in vitro growth of potato

Potato (Solanum tuberosum L.) is a major global food crop. Contemporary potato production largely utilizes micropropagation to produce healthy seed potatoes. The micropropagation of potatoes is widely achieved through nodal explants using the conventional Murashige and Skoog (MS) medium. Currently, effective culture media that can facilitate rapid propagation are increasingly required for new cultivars that have been developed to possess improved traits. In this study, we evaluated the effect of enhanced meso nutrients (CaCl₂.2H₂O, MgSO₄, and KH₂PO₄) in MS medium on the growth of S. tuberosum. The cultivars used in this study were representative of Japanese, European, and Peruvian lines. Enhanced meso nutrients improved the overall quality of all cultivars, as indicated by longer shoots and larger leaves with dark color, compared with MS medium only. Shoots grown on enhanced mesos were approximately 1.5 times longer than on MS medium. Quantitative ion analysis revealed that plantlets with improved shoot length and leaf quality in most cultivars had increased calcium, magnesium, potassium, and phosphorus uptake than plantlets on MS medium. The results suggest that the reduced iron uptake on 3.0×MS, compared with 2.0× or 2.5×MS mesos, reduced plant growth. This study revealed for the first time that mesos concentrations higher than MS medium concentrations, complemented by enhanced calcium, magnesium, potassium, phosphorus, and iron uptake, play a significant role in improving the in vitro growth of potato.     

Seedling survival responses to irradiance are differentially influenced by low-water availability in four tree species of the Iberian cool temperate–Mediterranean ecotone

Inter-specific differences in seedling survival responses along a sun-shade gradient and the influence of low-water availability were examined for four Iberian tree species (Quercus robur L., Quercus pyrenaica Willd., Pinus sylvestris L. and Pinus pinaster Ait.) typical of the cool temperate–Mediterranean transition zone. Seedlings were grown under controlled conditions in a factorial experiment with four levels of irradiance (1%, 6%, 20% and 100% of full sunlight) and two levels of water availability. Five censuses (from late spring to autumn) leading to four regular intervals (T₀ → T_I; T_I → T_II; T_II → T_III; T_III → T_IV) were established. Statistical models of seedling survival as a function of irradiance were calibrated throughout the whole experiment (T₀ → T_IV) and also for each time interval and water availability level. Seedling survival responses among different species diverged both in the type of functional response to irradiance and in their response to water stress. Ranking of species according to shade tolerance (Q. pyrenaica > Q. robur > P. sylvestris > P. pinaster) contrasted with tolerance of high irradiance and conformed to a hypothetical sun-shade trade-off for survival (i.e. species having higher survival in low irradiance—oaks—had poorer survival at high irradiance and vice-versa). Low-water availability also differentially affected each species, with pines being more drought tolerant than oaks. At an intra-specific level, low-water availability decreased survival of Q. pyrenaica under both high and low irradiance. For Q. robur, however, low-water availability exerted a relatively stronger effect under low irradiance. Consequences of the interplay between irradiance and water availability for explaining segregation and coexistence of forest tree species at the ecotone between cool temperate and Mediterranean forests are discussed.     

Improving chickpea yield by incorporating resistance to ascochyta blight

Ascochyta blight [Ascochyta rabiei (Pass.) Lab.] is the most destructive disease of chickpea (Cicer arietinum L.), but it can be managed effectively by the use of resistant cultivars. Therefore, a breeding programme was initiated during 1977–78 at ICARDA, Syria, to breed blight-resistant, high-yielding chickpeas with other desirable agronomic traits. Crosses were made in main season at Tel Hadya, Syria, and the F₁s were grown in the off season at Terbol, Lebanon. The F₂, F₄ and F₅ generations were grown in a blight nursery in the main season where blight epidemic was artificially created. The plants and progenies were scored for blight resistance and other traits. The F₃ and F₆ generations were grown in the off season under normal day length to eliminate late-maturing plants. The pedigree method of breeding was followed initially, but was later replaced by the F₄-derived family method. The yield assessment began with F₇ lines, first at ICARDA sites and later internationally. A total of 1584 ascochyta blight-resistant chickpea lines were developed with a range of maturity, plant height, and seed size not previously available to growers in the blight-endemic areas in the Mediterranean region. These included 92 lines resistant to six races of the ascochyta pathogen, and 15 large-seeded and 28 early maturity lines. New cultivars produced 33% more seed yield than the original resistant sources. The yield of chickpea declined by 340 kg ha^-1, with an increase in blight severity by one class on a 1–9 scale, reaching zero yield with the 8 and 9 classes. Development of blight-resistant lines made the introduction of winter sowing possible in the Mediterranean region with the prospect of doubling chickpea production. Twenty three cultivars have been released so far in 11 countries.Joint contribution from ICARDA and ICRISAT. ICRISAT Journal Article no. JA 1886.     

Breding common bean for improved biological nitrogen fixation

Common bean (Phaseolus vulgaris L.), which is an important food crop in the Americas, Africa and Asia, usually is thought to fix only small amounts of atmospheric nitrogen. However, field data indicate considerable genetic variability for total N₂ fixation and traits associated with fixation. Studies have shown that selection to increase N₂ fixation will be successful if: (1) discriminating traits (selection criteria) are measured precisely, (2) variability in germplasm is heritable, (3) selected parents are also agronomically suitable, (4) units of selection facilitate quantification of selection criteria, and (5) a breeding procedure that allows maximum genetic gain for N₂ fixation and recombination with essential agronomic traits is chosen. Breeding lines capable of fixing enough atmospheric N₂ to support seed yields of 1000–2000 kg ha^–1 have been identified and new cultivars with high N₂ fixation potential are being released.     

Ammonia-oxidizing bacteria on root biofilms and their possible contribution to N use efficiency of different rice cultivars

Ammonia-oxidizing bacteria (AOB) populations were studied on the root surface of different rice cultivars by PCR coupled with denaturing gradient gel electrophoresis (DGGE) and fluorescence in situ hybridization (FISH). PCR-DGGE of the ammonium monooxygenase gene (amoA) showed a generally greater diversity on root samples compared to rhizosphere and unplanted soil. Sequences affiliated with Nitrosomonas spp. tended to be associated with modern rice hybrid lines. Root-associated AOB observed by FISH were found within a discrete biofilm coating the root surface. Although the total abundance of AOB on root biofilms of different rice cultivars did not differ significantly, there were marked contrasts in their population structure, indicating selection of Nitrosomonas spp. on roots of a hybrid cultivar. Observations by FISH on the total bacterial community also suggested that different rice cultivars support different bacterial populations even under identical environmental conditions. The presence of active AOB in the root environment predicts that a significant proportion of the N taken up by certain rice cultivars is in the form of NO₃ ^–-N produced by the AOB. Measurement of plant growth of hydroponically grown plants showed a stronger response of hybrid cultivars to the co-provision of NH₄ ⁺ and NO₃ ^–. In soil-grown plants, N use efficiency in the hybrid was improved during ammonium fertilization compared to nitrate fertilization. Since ammonium-fertilized plants actually receive a mixture of NH₄ ⁺ and NO₃ ^– with ratios depending on root-associated nitrification activity, these results support the advantage of co-provision of ammonium and nitrate for the hybrid cultivar.     

Genetic analysis of walnut cultivars from southwest China: Implications for germplasm improvement

Walnuts are highly valued for their rich nutritional profile and wide medicinal applications. This demand has led to the intensification of breeding activities in major walnut production areas such as southwest China, in order to develop more superior cultivars. With the increasing number of cultivars, accurate identification becomes fundamental to selecting the right cultivar for grafting, industrial processing or development of new cultivars. To ensure proper identification of cultivars and understand the genetic structure of wild and cultivated material, we genotyped 362 cultivated and wild individuals of walnut trees from southwest China (with two additional populations from Xinjiang, plus three cultivars from Canada, France and Belgium) using 36 polymorphic microsatellite loci. We found relatively low indices of genetic diversity (H_O = 0.570, H_E = 0.404, N_A = 2.345) as well as a high level of clonality (>85% of cultivars), indicating reliance on genetically narrow sources of parental material for breeding. Our STRUCTURE and PCoA analyses generally delineated the two species, though considerable levels of introgression were also evident. More significantly, we detected a distinct genetic group of cultivated Juglanssigillata, which mainly comprised individuals of the popular ‘Yangbidapao’ landrace. Finally, a core set of 18 SSR loci was selected, which was capable of identifying 32 cultivars. In a nutshell, our results call for more utilization of genetically disparate material, including wild walnut trees, as parental sources to breed for more cultivars. The data reported herein will significantly contribute towards the genetic improvement and conservation of the walnut germplasm in southwest China.     

Development of marker-free transgenic lettuce resistant to <Emphasis Type="Italic">Mirafiori lettuce big</Emphasis>-<Emphasis Type="Italic">vein virus</Emphasis>

Lettuce big-vein disease caused by Mirafiori lettuce big-vein virus (MLBVV) is found in major lettuce production areas worldwide, but highly resistant cultivars have not yet been developed. To produce MLBVV-resistant marker-free transgenic lettuce that would have a transgene with a promoter and terminator of lettuce origin, we constructed a two T-DNA binary vector, in which the first T-DNA contained the selectable marker gene neomycin phosphotransferase II, and the second T-DNA contained the lettuce ubiquitin gene promoter and terminator and inverted repeats of the coat protein (CP) gene of MLBVV. This vector was introduced into lettuce cultivars ‘Watson’ and ‘Fuyuhikari’ by Agrobacterium tumefaciens-mediated transformation. Regenerated plants (T₀ generation) that were CP gene-positive by PCR analysis were self-pollinated, and 312 T₁ lines were analyzed for resistance to MLBVV. Virus-negative plants were checked for the CP gene and the marker gene, and nine lines were obtained which were marker-free and resistant to MLBVV. Southern blot analysis showed that three of the nine lines had two copies of the CP gene, whereas six lines had a single copy and were used for further analysis. Small interfering RNAs, which are indicative of RNA silencing, were detected in all six lines. MLBVV infection was inhibited in all six lines in resistance tests performed in a growth chamber and a greenhouse, resulting in a high degree of resistance to lettuce big-vein disease. Transgenic lettuce lines produced in this study could be used as resistant cultivars or parental lines for breeding.     

Comparison of low- and high molecular-weight wheat glutenin allele effects on flour quality

Five crosses were made, using a set of New Zealand wheat cultivars, to measure the effect of glutenin allele differences on baking quality parameters. The alleles involved were: Glu-A1 (2*, 1 and n), Glu-D1 (5+10, 2+12), Glu-A3 (c, d and e), Glu-B3 (Sec-12, Sec-13, b and g), Glu-D3 (a and b). The allelic variation of F₃ individual plants was identified by SDS-PAGE, and plants with the same HMW-GS and LMW-GS patterns were grouped. Quality parameters were then measured on the grouped F₄ bulks. Quality parameters measured for this study were wholemeal flour protein content (WFP), grain hardness (HAR), SDS sedimentation volume (SED), Pelshenke time (PEL), mid-line peak value (MPV) and the mid-line peak time (MPT) of a mixograph. The results showed there were significant quality differences within most populations associated with the possession of a particular allele, reaching magnitudes of up to 42% for the range between populations. Most glutenin allelic comparisons showed significant differences for at least one of the resultant measured quality parameters. Allelic differences of Glu-A1 significantly influenced all characters except MPT, with the null allele apparently inferior; possession of 5+10 at Glu-D1 significantly increased Pelshenke time and SED volumes relative to allele 2+12; WFP, SED and MPV were significantly affected by the Glu-A3 alleles tested. Glu-B3 alleles significantly affected all characters except hardness and the Glu-D3 alleles tested significantly affected all characters other than hardness and SDS sedimentation volume. Received: 8 June 1999 / Accepted: 25 July 2000     

Polygenic control of quantitative antibody responsiveness: restrictions of the multispecific effect related to the selection antigen

Among the differences observed between the various high (H) and low (L) antibody responder lines of mice resulting from distinct bidirectional selective breedings, one of the most puzzling is the variation in the multispecific effect, i. e., in the modification of antibody responses to antigens unrelated to those used during the selection. The best examples are the H and L lines of selection IV, selected on the basis of responses to somatic antigen of Salmonella which do not differ in their antibody responses to sheep erythrocytes (SE). However, a wide range of variability is observed in the responses of (H_IV x L_IV)F₂ hybrids to this antigen, and it was therefore hypothesized that distinct groups of genes might regulate antibody responses to SE and the somatic antigen. Indeed, a new selection (IV-A) for anti-SE responsiveness started from these (H_IV x L_IV)F₂ successfully produced a high and a low anti-SE responder line. The results of selection IV-A and the variance analysis of (H_IV-A × L_IV-A)F₂ hybrids are reported. They are roughly similar to those in selection I, also carried out for anti-SE responsiveness. In vivo attempts to identify the major regulatory mechanism which contributes to the interline difference indicate that the efficiency of macrophage accessory function has been modified in selection IV-A, as was observed in selection I, whereas this function did not differ in Hév and Lév lines. Probably in relation to the involvement of macrophage function there is a notable increase of the multispecific effect in selection IV-A when compared with selection IV. The results of selection IV-A demonstrate that responsiveness to heterologous erythrocytes and to somatic antigen of Salmonella are under separate polygenic control operating through distinct regulatory mechanisms. The choice of the selection antigen and immunization procedure is of major importance for defining the gene interaction operating in each selective breeding experiment and the extent of its multispecific effect.Abbreviations used in this paper f. ag. S. flagellar antigen of Salmonella - H high responder line (roman numeral is the selection number) - h₂ heritability - HE human erythrocytes - HoGG horse gamma globulin - L low responder line (roman numeral is the selection number) - PE pigeon erythrocytes - R response to selection - RGG rabbit gamma globulin - S selection differential - s. ag. S. somatic antigen of Salmonella - SE sheep erythrocytes