Computer Simulation of Vapor-Liquid Phase Separation

Abstract

A late-time growth law of domains undergoing vapor-liquid phase separation is studied for two- and three-dimensional Lennard-Jones fluids by molecular dynamics simulations. The characteristic domain size shows a power law growth in a late stage with the growth exponent of ½ for both two- and three-dimensional fluids. This study concerns also the relationship between statistical properties of domain patterns and temperatures. The asymptotic form factor of each system is obtained using scaling and the asymptotic tail of the form factor is analyzed. This tail is related to the domain-wall structure. At low system temperatures, the form factor satisfies Porod's law; the asymptotic tail decreases as S(k) ～ k ^{?(D+ 1)} where D is the system dimensionality. However, it is found that the decay of the asymptotic tail becomes slower than that of the Porod tail at higher temperatures in both two- and three-dimensional systems. This indicates that the dimension of the domain wall is fractal and increases with increasing system temperature.     

A Study of Conformational Equilibria in Chain Molecules. I. Liquid n-Butane

Abstract

We have performed molecular dynamics simulations for liquid n-butane in order to understand liquid structures in terms of both inter- and intra-molecular interactions. Each n-butane molecule consists of four sites interacting with LJ potential and only a dihedral angle is taken into account as the internal degree of freedom. The population of gauche conformations with respect to the ideal gas state is found to increase in the liquid state. To investigate how the intermolecular interaction affects the dihedral angle distribution, we also adopt the repulsive LJ potential (RLJ) model. It is found that the nearest neighbor packing of the methyl and/or methylene groups can be approximately represented by using only the repulsive interaction. From the dihedral angle distribution, however, the rate of the shift of RLJ model to gauche is larger than that of LJ model and the attractive force also plays a significant role in the conformational equilibrium.     

Influence of very small bubbles on the dynamic kLA measurement in viscous gas–liquid systems

Experiments reveal a fraction of tiny bubbles (?1 mm) in viscous gas-liquid systems. It is plausible that the oxygen tension is these bubbles will be in equilibrium with that in the liquid within seconds. This means that, as regards to such oxygen concentration changes as occur on k_L A determination by the dynamic method, the “liquid-small bubble dispersion” can be considered as a homogeneous phase. This leads to major corrections and, therefore, the application of the dynamic k_L A method in viscous gas-liquid systems will be problematic.     

Non-planckian equilibrium radiation of plasma-like media

Consideration of equilibrium radiation of plasma-like media shows that the spectral distribution of such radiation differs from that of Planckian equilibrium radiation (blackbody radiation). The physical reason for this difference consists in the impossibility of propagation of photons with the dispersion law ω = ck in systems of charged particles. The thermodynamics of equilibrium electromagnetic radiation in plasma is also considered. It is shown that the difference of the thermodynamic properties of such radiation from those of Planckian radiation is characterized by the parameter a = ℏΩ _p /T. This difference is especially pronounced in plasma media in which a ≥ 1. Applications of the results obtained to plasmas of metals (first of all, liquid metals in which charged particles have no distant order) and to the plasma model of the early Universe are discussed.     

Metastability in a temperature-dependent model system for predator-prey mite outbreak interactions on fruit trees

The nonlinear behavior of a particular Kolmogorov-type exploitation differential equation system assembled by May (1973,Stability and Complexity in Model Ecosystems, Princeton University Press) from predator and prey components developed by Leslie (1948,Biometrica 35, 213–245) and Holling (1973,Mem. Entomol. Soc. Can. 45, 1–60), respectively, is re-examined by means of the numerical bifurcation code AUTO 86 with model parameters chosen appropriately for a temperature dependent mite interaction on fruit trees. The most significant result of this analysis is that, in addition to the temperature ranges over which the single community equilibrium point of the system iseither globally stableor gives rise to a globally stable limit cycle, there can also exist a range wherein multiple stable states occur. These stable states consist of a focus (spiral point) and a limit cycle, separated from each other in the phase plane by an unstable limit cycle. The ecological implications of such metastability, hysteresis and threshold behavior for the occurrence of outbreaks, the persistence of oscillations, the resiliency of the system and the biological control of mite populations are discussed. It is further suggested that a model of this sort which possesses a single community equilibrium point may be more useful for representing outbreak phenomena, especially in the presence of oscillations, than the non-Kolmogorov predator-prey systems possessing three community equilibrium points, two of which are stable and the other a saddle point, traditionally employed for this purpose.     

Molecular Simulations of Phase Transitions in Pores

Abstract

Methods for simulating phase transitions in narrow pores are reviewed, and the advantages and disadvantages of different techniques are discussed. Examples are given of applications to vapor-liquid, liquid-liquid, melting and freezing, solid-solid and layering transitions. While there has been a considerable body of simulation work on vapor-liquid, wetting and layering transitions for simple fluids and pore geometries, much remains to be done on more complex geometries and network effects, on heterogeneous surfaces, and on liquid-liquid, melting and solid-solid transitions in pores.     

LytSR和PdtaSR双组分系统对须糖多孢菌丁烯基多杀菌素生物合成的影响

[目的]须糖多孢菌(Saccharopolyspora pogona)基因组中存在一些双组分系统(two-component system,TCS),包括一个LytR调控因子和一个PdtaR转录抗终止调节因子,我们旨在通过基因工程技术改造分析这两个双组分系统蛋白在须糖多孢菌中的作用.[方法]本研究利用融合PCR和属间接...     

Influence of Cooperativity on Hydrogen Bond Networks

Abstract

Cooperative effects are known to strongly affect the geometrical, energetic and vibrational properties of hydrogen bonded systems. In particular, such effects strongly favor molecular arrangements where each molecule is simultaneously a donor and an acceptor of hydrogen bonds (HBs), regardless of the chemical nature of the monomer subunits. In the particular case of water systems, it has been shown that the more a molecule is a proton donor in HBs, the more the HBs where it is a proton acceptor are reinforced. Such a property could be at the origin of the equilibrium between the two species of hydrogen bonded water molecules in liquid water (one with a strong hydrogen bonding character, and one with a weaker one), as experimentally evidenced and as a molecular dynamic study of the small (H₂O)₂₄ cluster clearly suggests.     

Optimising multi-tier open nucleus breeding schemes

Summary The constant migration (CM) method and the ebv migration (EBVM) method of optimising the design of multi-tier open nucleus breeding schemes are presented and compared. The equation for the equilibrium rate of genetic gain of a three-tier open nucleus scheme is determined using the CM method. The major advantage of the EBVM method is the reduction in the number of parameters which have to be varied in order to locate the maximum equilibrium rate of genetic gain. For the CM method for the number of variable parameters is 5, 14, 27 and (2n + 1) (n - 1) for unrestricted male and female migration in schemes with 2, 3, 4 and n tiers respectively. The corresponding number of variable parameters for the EBVM method is 1, 2, 3 and n-1 respectively. A procedure is given for the EBVM method so as to accomodate variance loss due to selection and variance gain due to the mixing of groups with a different mean breeding value.     

Gibbs ensemble Monte Carlo simulations of binary vapour–liquid–liquid equilibrium: application to n-hexane–water and ethane–ethanol systems

Gibbs ensemble Monte Carlo (GEMC) simulations in the isochoric–isothermal (NVT) ensemble were used to simulate vapour–liquid–liquid equilibrium (VLLE) for binary n-hexane–water and ethane–ethanol mixtures. The GEMC simulation of binary VLLE data proved to be extremely difficult and that is probably the reason why the open literature is so sparse with simulations for these types of systems. The results presented in this paper are to our knowledge the first successful binary three-phase GEMC simulations of non-idealised fluid systems. This paper also shows that the isobaric–isothermal (NPT) ensemble is unsuitable for the simulation of phase equilibria of binary three-phase systems.     

Determination of Water Stress of Eucalypts in the Field

Abstract

Two methods for determining plant hydrature in the field have been tested on Eucalyptus viminalis Labill. and E. dalrympleana Maiden one-year-old seedlings. The parameters selected are the physico-chemical properties of sap and the diffusion pressure deficit of leaves. Before extracting sap, leaves have been subjected to two different preliminary treatments to improve permeability of cellular membranes, viz. chloroform and liquid nitrogen treatments, the latter being chosen since it was quicker. Sap has been obtained by espressing at 272 Atm., then filtered and analyzed. Diffusion pressure deficit has been determined by equilibration with vapour. A series of samples has been placed in moist chambers with known water potential until equilibrium has been attained. DPD corresponds to the water potential of the chamber where the sample neither gains nor loses water.     

一株高产洛伐他汀红曲霉的筛选与液态发酵条件优化

【背景】洛伐他汀(lovastatin)是红曲霉的次生代谢产物,是重要的临床用降血脂药物。在液态发酵条件下,红曲霉的洛伐他汀产量较低,难以满足工业化生产的要求。【目的】筛选获得一株高产洛伐他汀的红曲霉株,并通过优化液态发酵条件提高洛伐他汀的产量。【方法】从红曲米中筛选获得一株高产洛伐他汀的红曲霉株,依据形态学特征、生理生化特性及18S rRNA基因序列分析对分离菌株进行鉴定;通过响应面法对其产洛伐他汀的液态发酵条件进行优化。【结果】获得一株产洛伐他汀的紫红曲霉(Monascus purpureus M4),该菌在甘油57.80g/L、酵母浸粉5.52 g/L、接种量为6.90%条件下,洛伐他汀产量(173.60 mg/L)较优化前提高了4.8倍。【结论】菌株M4产洛伐他汀最优液态发酵条件的建立,为洛伐他汀的大规模生产及该菌株的工业化应用提供了技术支撑。     

Grand Canonical Monte Carlo Simulation for Solubility Calculation in Supercritical Extraction

Abstract

The Grand Canonical Ensemble Monte Carlo (GCEMC) technique is used to simulate highly nonideal dilute mixtures in the near vapor-liquid critical region. These systems are commonly found in supercritical fluid extraction processes. Mixtures composed of model CO₂/naphthalene/water molecules are studied. Very large and highly correlated concentration fluctuations were observed. It was found that when the total number of molecules in the system exceeded about 150, system size dependence was not significant. The GCEMC method breaks down when the system density exceeds about 1.5 times the solvent critical density due primarily to the low probability of successful addition and removal of the large naphthalene molecules. In some systems, the presence of a small amount of water caused a dramatic increase in the system density and in naphthalene solubility. By examining the radial distribution functions in these mixtures, the origin of this effect can be attributed to the preferential aggragation of the solute naphthalene molecules around the highly polar water molecules.     

Preparative Isolation and Purification of Hydroxyanthraquinones from Rheum tanguticum Maxim. on Normal Phase Silica Gel: Using a Flash Master Personal System

Abstract

A flash chromatography method for preparative separation and purification of five hydroxyanthraquinones from the Chinese medicinal herb Rheum tanguticum Maxim. ex Balf. was developed by using Flash Master Personal⁺ systems. The purities of the products, chrysophanol, physcion, emodin, aloe‐emodin, and rhein were all over 90%, determined by high performance liquid chromatography (HPLC). Their structures were ascertained by EI‐MS, ¹H‐ and ¹³C‐NMR data, and by co‐TLC and HPLC with the authentic samples available in our laboratory.     

Vapor liquid equilibrium behavior of aqueous ethanol solution during vacuum coupled simultaneous saccharification and fermentation

The data on ethanol-water vapor-liquid equilibrium in the presence of cellulase enzyme, nutrients, yeast, and rice straw indicated a substantial increase in ethanol concentration in vapor phase at reduced pressures. Maximum relative volatility of ethanol in the presence of added components is approximately twice that of a pure ethanol-water system. The equation correlating the activity coefficient and ethanol concentration in the liquid phase adequately represents the equilibrium behavior.     

Two definitions of stability of equilibria

In classical physics the stability of an equilibrium requires that any, even infinitesimal, displacement from the configuration of equilibrium results in forces which tend to restore the original equilibrium configuration. In case of several stable equilibrium configurations, the height of the threshold, which must be exceeded by the deviarion from the stable equilibrium in order to bring the configuration into another stable equilibrium is taken as a measure of stability of the first configuration. In quantum mechanics, and in the recent work of I. Baianu, S. Comorosan and M. Marinescu (Bull. Math. Biophysics,30, 625–635, 1968;31, 59–70, 1969;32, 539–561, 1970) on organismic supercategories, preference is given to take, as ameasure of the degree of stability of a configuration, or of a “state”, the length of time during which the system remains in that configuration. It is shown that under rather general conditions the two criteria are equivalent.     

Application of ITC in foods: A powerful tool for understanding the gastrointestinal fate of lipophilic compounds

BackgroundIsothermal titration calorimetry (ITC) is a biophysical technique widely used to study molecular interactions in biological and non-biological systems. It can provide important information about molecular interactions (such as binding constant, number of binding sites, free energy, enthalpy, and entropy) simply by measuring the heat absorbed or released during an interaction between two liquid solutions.Scope of the reviewIn this review, we present an overview of ITC applications in food science, with particular focus on understanding the fate of lipids within the human gastrointestinal tract. In this area, ITC can be used to study micellization of bile salts, inclusion complex formation, the interaction of surface-active molecules with proteins, carbohydrates and lipids, and the interactions of lipid droplets.Major conclusionsITC is an extremely powerful tool for measuring molecular interactions in food systems, and can provide valuable information about many types of interactions involving food components such as proteins, carbohydrates, lipids, surfactants, and minerals. For systems at equilibrium, ITC can provide fundamental thermodynamic parameters that can be used to establish the physiochemical origin of molecular interactions.General significanceIt is expected that ITC will continue to be utilized as a means of providing fundamental information about complex materials such as those found in foods. This knowledge may be used to create functional foods designed to behave in the gastrointestinal tract in a manner that will improve human health and well-being. This article is part of a Special Issue entitled Microcalorimetry in the BioSciences — Principles and Applications, edited by Fadi Bou-Abdallah.     

Analysis of tracer experiments: IV. The kinetics of generalN compartment systems

The methods of C. W. Sheppard and A. S. Householder (Jour. App. Physcis,22, 510–20, 1951), H. D. Landahl (Bull. Math. Biophysics,16, 151–54, 1954) and H. E. Hart (Bull. Math. Biophysics,17, 87–94, 1955;ibid.,19, 61–72, 1957;ibid.,20, 281–87, 1958) are employed in studying the kinetics of generalN compartment systems. It is shown that the nature of the transfer processes occurring in fluid flow systems and the chemical processes occurring in quadratic systems and in catalyzed quadratic systems can in principle be completely determined for all polynomial dependencies. Systems involving three-body and higher-order interactions can be completely solved, however, only if supplementary information is available. Research supported by the Atomic Energy Commission, Contract AT (30-1)-1551.     

NMR Study on The Tuning of North ⇆ South Equilibrium in Nucleos(t)ides by Metal Ion Interactions

Abstract

The NMR study on the interactions of dGpMe (1), MepdG (2) and dG (3) with Mg²⁺, Zn²⁺ and Hg²⁺ ions in D₂O solution has shown that binding of softer metal ions to N7 shifts N ? S pseudorotational equilibrium towards N-type conformations. At the same time the population of the anti conformers is slightly increased.     

细胞焦亡法破碎微生物细胞在合成生物学与代谢工程的应用

【背景】细胞焦亡是一种细胞程序性死亡。在古菌和细菌中,gasdermin同源蛋白（GSDM）能够被特定的活化caspase （protease）酶切,从而激活类似于细胞焦亡的效应,产生细胞破碎效果。【目的】合成生物学、代谢工程和生物制造等应用过程中,细胞破碎是不可或缺的一步。利用细胞焦亡法破碎细胞取代传统的破碎方法,可以简化操作、提高生产效益。【方法】在大肠杆菌（Escherichia coli） BW25113中共表达protease和不同来源的GSDM,选择有明显细胞焦亡效应即来源Runella sp.的GSDM进行蛋白截短改造,使其在诱导表达蛋白截短体GSDMJD后能直接激活细胞焦亡效应。对GSDMJD进行过表达优化,获得可控大肠杆菌细胞焦亡菌株。进一步以重组表达蔗糖磷酸化酶为研究模型,验证本系统应用于细胞破碎释放蛋白的效果。【结果】实现了大肠杆菌中细胞焦亡的人为可控。焦亡菌株在诱导表达焦亡相关蛋白2 h后大肠杆菌细胞破碎死亡,内容物释放。将上述系统和超声法应用于制备蔗糖磷酸化酶粗酶液,细胞焦亡法制备的粗酶液的相对酶活显著高于超声法制备的粗酶液。在制备粗酶液的菌液OD₆₀₀值为2.0时,细胞焦亡法制备的粗酶液相对酶活最高并且相较于超声法制备粗酶液,提高了60%的相对酶活。【结论】细胞焦亡提供了一种更加简单快捷、绿色环保的微生物细胞破碎方式,为合成生物学与代谢工程的发展奠定了基础。