Synopsis of Satanocrater (Acanthaceae)

Four species are recognized in the tropical African genus Satanocrater: S. fellatensis (= S. berhautii) in Sudan, Ethiopia and Guinea, S. ruspolii in Ethiopia, Somalia and Kenya, S. somalensis (= S. coccineus) in Ethiopia and Somalia, and S. paradoxus in Ethiopia, Somalia and Kenya. Three lectotypes and one neotype are selected. A key to the species and an illustration of S. ruspolii are provided.     

Known and predicted African winter distributions and habitat use of the endangered Basra reed warbler ( Acrocephalus griseldis) and the near-threatened cinereous bunting ( Emberiza cineracea)

The Basra reed warbler (Acrocephalus griseldis) and the cinereous bunting (Emberiza cineracea) are the only two Western Palearctic passerine bird species that overwinter in East Africa and are classified by BirdLife International as endangered and near-threatened, respectively. To refine the African wintering ranges of these two species, we made an effort to collect as much distributional data as possible. We then used the available point-locality data to predict the wintering distributions using a Geographic Information Systems (GIS) based inductive modelling technique called BIOCLIM. For this purpose, we developed four environmental GIS layers that are presumed to reflect the environmental preferences of migrant birds. Our data showed that the known winter distribution of the Basra reed warbler was concentrated in Kenya, Tanzania, Malawi and Mozambique, where it was usually found in dense vegetation growing in coastal scrub, woodland thickets, swamps, marshes, flooded pools and grasslands, and along ditches and edges of rivers, ponds, lagoons and lakes. The predicted winter distribution of this species includes most of East Africa but, given the habitat preferences of this species, is probably limited to low-lying areas near the coastline. The known winter distribution of the cinereous bunting is so far limited to Eritrea, where the species has been observed in October, November, February and March, in sparsely vegetated, sandy or rocky habitats on coastal plains and deserts. The predicted winter distribution of this species includes the plains and hills along the Red Sea coasts in southern Egypt, Sudan, Eritrea, Ethiopia and Sudan, as well as a few inland areas in Sudan, Ethiopia and Kenya.Communicated by F. Bairlein     

Reconstructing the origin and dispersal patterns of village chickens across East Africa: insights from autosomal markers

Unravelling the genetic history of any livestock species is central to understanding the origin, development and expansion of agricultural societies and economies. Domestic village chickens are widespread in Africa. Their close association with, and reliance on, humans for long‐range dispersal makes the species an important biological marker in tracking cultural and trading contacts between human societies and civilizations across time. Archaezoological and linguistic evidence suggest a complex history of arrival and dispersion of the species on the continent, with mitochondrial DNA (mtDNA) D‐loop analysis revealing the presence of five distinct haplogroups in East African village chickens. It supports the importance of the region in understanding the history of the species and indirectly of human interactions. Here, through a detailed analysis of 30 autosomal microsatellite markers genotyped in 657 village chickens from four East African countries (Kenya, Uganda, Ethiopia and Sudan), we identify three distinct autosomal gene pools (I, II and III). Gene pool I is predominantly found in Ethiopia and Sudan, while II and III occur in both Kenya and Uganda. A gradient of admixture for gene pools II and III between the Kenyan coast and Uganda's hinterland (P = 0.001) is observed, while gene pool I is clearly separated from the other two. We propose that these three gene pools represent genetic signatures of separate events in the history of the continent that relate to the arrival and dispersal of village chickens and humans across the region. Our results provide new insights on the history of chicken husbandry which has been shaped by terrestrial and maritime contacts between ancient and modern civilizations in Asia and East Africa.     

Analysis of ribosomal DNA internal transcribed spacer sequences of the Leishmania donovani complex

To understand phylogenetic relationships of species and strains within the Leishmania donovani complex, we have analyzed the ribosomal DNA internal transcribed spacer (ITS) sequences of 27 Leishmania infantum, 2 Leishmania chagasi, 18 L. donovani and 5 Leishmania archibaldi strains of different zymodemes and geographical origin. Eight ITS sequence types were found. All detected sequence variation within ITS1 and ITS2 was based on 12 polymorphic microsatellites. The L. infantum strains from the Mediterranean region, China and L. chagasi from the New World formed a phylogenetic group well separated from the second main group including all strains from East Africa and India. Within the latter group three distinct phylogenetic subgroups could be differentiated: (1) L. donovani (Sudan/Ethiopia, China) + L. archibaldi (Sudan), (2) L. donovani (Sudan/Ethiopia) + L. infantum (Sudan) + L. archibaldi (Sudan/Ethiopia), and (3) L. donovani (Kenya, India). These groups are not consistent with previous species definitions based on isoenzyme analyses, e.g. L. infantum is polyphyletic and L. archibaldi is not supported as a distinct species. Two groups of Indian strains could be differentiated, one of which has an identical sequence type to the strains from Kenya. Three main lineages of strains can thus be differentiated in East Africa: two quite distantly related groups of strains from Sudan/Ethiopia, and a third group including all strains from Kenya, which is more closely related to part of the Indian strains than to any of the Sudanese/Ethiopian groups. The ITS sequence analysis presented here supports the need for revision of the taxonomy of the L. donovani complex.     

Two new species of Justicia sect. Ansellia (Acanthaceae) from E and NE tropical Africa

The new species Justicia ornatopila from Sudan, Ethiopia, Somalia, Uganda, Kenya and Tanzania, and J. lorata from Kenya are described and illustrated. Information on pollen morphology is also provided     

Two new combinations in the South Sudanese flora

Two new combinations are made in preparation for a forthcoming checklist of the plants of Sudan and South Sudan: Dicliptera lanceolata (Lindau) I. Darbysh. & Kordofani (Acanthaceae), a South Sudan endemic, and Campylospermum likimiense (De Wild.) I. Darbysh. & Kordofani (Ochnaceae), recorded from South Sudan and Ethiopia to Tanzania and the Democratic Republic of Congo. Lectotypes are designated for each name. The habitat and ecology, distribution within South Sudan and conservation status are presented for each species.     

Inference of population structure of Leishmania donovani strains isolated from different Ethiopian visceral leishmaniasis endemic areas

Background

Parasites'' evolution in response to parasite-targeted control strategies, such as vaccines and drugs, is known to be influenced by their population genetic structure. The aim of this study was to describe the population structure of Ethiopian strains of Leishmania donovani derived from different areas endemic for visceral leishmaniasis (VL) as a prerequisite for the design of effective control strategies against the disease.

Methodology/Principal Findings

Sixty-three strains of L. donovani newly isolated from VL cases in the two main Ethiopian foci, in the north Ethiopia (NE) and south Ethiopia (SE) of the country were investigated by using 14 highly polymorphic microsatellite markers. The microsatellite profiles of 60 previously analysed L. donovani strains from Sudan, Kenya and India were included for comparison. Multilocus microsatellite typing placed strains from SE and Kenya (n = 30) in one population and strains from NE and Sudan (n = 65) in another. These two East African populations corresponded to the areas of distribution of two different sand fly vectors. In NE and Sudan Phlebotomus orientalis has been implicated to transmit the parasites and in SE and Kenya P. martini. The genetic differences between parasites from NE and SE are also congruent with some phenotypic differences. Each of these populations was further divided into two subpopulations. Interestingly, in one of the subpopulations of the population NE we observed predominance of strains isolated from HIV-VL co-infected patients and of strains with putative hybrid genotypes. Furthermore, high inbreeding irreconcilable from strict clonal reproduction was found for strains from SE and Kenya indicating a mixed-mating system.

Conclusions/Significance

This study identified a hierarchical population structure of L. donovani in East Africa. The existence of two main, genetically and geographically separated, populations could reflect different parasite-vector associations, different ecologies and varying host backgrounds and should be further investigated.     

First report of the fall armyworm,Spodoptera frugiperda (Lepidoptera: Noctuidae), natural enemies from Africa

The fall armyworm (FAW), Spodoptera frugiperda, is a major pest of maize in North and South America. It was first reported from Africa in 2016 and currently established as a major invasive pest of maize. A survey was conducted to explore for natural enemies of the fall armyworm in Ethiopia, Kenya and Tanzania in 2017. Smallholder maize farms were randomly selected and surveyed in the three countries. Five different species of parasitoids were recovered from fall armyworm eggs and larvae, including four within the Hymenoptera and one Dipteran. These species are new associations with FAW and were never reported before from Africa, North and South America. In Ethiopia, Cotesia icipe was the dominant larval parasitoid with parasitism ranging from 33.8% to 45.3%, while in Kenya, the tachinid fly, Palexorista zonata, was the primary parasitoid with 12.5% parasitism. Charops ater and Coccygidium luteum were the most common parasitoids in Kenya and Tanzania with parasitism ranging from 6 to 12%, and 4 to 8.3%, respectively. Although fall armyworm has rapidly spread throughout these three countries, we were encouraged to see a reasonable level of biological control in place. This study is of paramount importance in designing a biological control program for fall armyworm, either through conservation of native natural enemies or augmentative release.     

Food selection by freshwater snails in the Gezira irrigation canals,Sudan

Stomach content analysis was carried out on samples of the freshwater snail species Biomphalaria pfeifferi, Bulinus truncatus, Bulinus forskalii (Pulmonata, Planorbidae), Lymnaea natalensis (Pulmonata, Lymnaeidae), Melanoides tuberculata, Cleopatra bulimoides (Prosobranchia, Thiaridae) and Lanistes carinatus (Prosobranchia, Ampullariidae) from different irrigation canals in Sudan. In order to evaluate overlap in diet selection among these species, sites with two or more of the above-mentioned species present were selected. For some species food choice was examined in relation to size groupings. In addition, samples of Marisa cornuarietis (Prosobranchia, Ampullariidae) from small ponds in Sudan, samples of Biomphalaria pfeifferi and Helisoma duryi (Pulmonata, Planorbidae) from drainage canals in an irrigation scheme in northern Tanzania, and samples of H. duryi from fish ponds in the coastal area of Kenya were also analysed. The results indicate a great similarity in the food choice of these species, especially among the pulmonate species. All species feed on fine detritus, epiphytic algae and decaying macrophytes. No fresh fragments of aquatic macrophytes were found and animal remains were found only on a few occasions. However, the stomach contents of the ampullarid species were characterized by large fragments of dead macrophyte tissue, while the composition of the finer particles showed a great resemblance to that of the pulmonate species. The diet of the thiarid species is essentially the same as that of the pulmonate species, although in one site Cleopatra bulimoides showed a greater preference for green algae. Apart from the avoidance of blue-green algae, there was little evidence of selection of certain algal components of the Aufwuchs for the pulmonate species. Detritus constitutes the major component of the stomach content of all these snail species.     

A Ploceus sp. nov. from Uganda

A new species of weaverbird, Ploceus victoriae , is described from Entebbe, Uganda. Its nearest relatives are Ploceus taeniopterus of northeast Zaïre, Sudan, Ethiopia and northwest Kenya, and Ploceus velatus , widespread through East Africa and across the Sahel to the Atlantic, but it differs in several morphological and behavioural characteristics.     

Genetic variation in the Afromontane tree Prunus africana,an endangered medicinal species

An understanding of the patterns of variation within and among populations of tropical trees is essential for devising optimum genetic management strategies for their conservation and sustainable utilization. Here, random amplified polymorphic DNA (RAPD) analysis was used to partition variation within and among 10 populations of the endangered Afromontane medicinal tree, Prunus africana, sampled from five countries across the geographical range of the species (Cameroon, Ethiopia, Kenya, Madagascar and Uganda). Analysis of molecular variance ( AMOVA ) employed 48 RAPD markers and revealed most variation among countries (66%, P < 0.001). However, variation among individuals within populations and among populations within Cameroon and Madagascar was also highly significant. Analysis of population product frequency data indicated Ugandan material to be more similar to populations from Cameroon than populations from Kenya and Ethiopia, while Malagash populations were most distinct. The implications of these findings for determining appropriate approaches for conservation of the species, particularly in Cameroon and Madagascar, are discussed.     

Mosses of southwest Ethiopian montane forests – notes on their occurrence pattern and many new country records

One hundred and thirty-nine taxa of mosses are reported from the montane forest zone of southwest Ethiopia. Of these, 53 taxa are new country records and Meteoriopsis reclinata (Müll.Hal.) M.Fleisch. ex Broth. is, in addition, new to Africa. Most of the new records are of species also found in Uganda, Kenya or Tanzania, but there are some surprises, such as Fabronia perciliata Müll.Hal. with the closest location in South Africa and Namibia, Entodontella cameruniae Broth. previously known only from West Africa and Bryomaltaea obtusifolia (Hook.) Goffinet, otherwise reported only from the Democratic Republic of the Congo. We list all taxa and give a short account of their frequency and in which habitat and on which substrate they grow. That such a large proportion of the species are new to the country suggests that Ethiopia is bryologically very under-explored, and that further exploration will reveal many additional species. In particular, the remnant forests of southwest Ethiopia are likely to be of great importance as bryophyte hotspots.     

<Emphasis Type="Italic">Catabrosa</Emphasis> versus <Emphasis Type="Italic">Colpodium</Emphasis> (Poaceae: Poeae) in southern Africa,with a key to these genera and their species in Africa

Differences between the genera Colpodium Trin. and Catabrosa P. Beauv. are discussed. Colpodium drakensbergense Hedberg & I. Hedberg is transferred to Catabrosa drakensbergense (Hedberg & I. Hedberg) Soreng & Fish and a lectotype is chosen for the species. This leaves only two Colpodium species in Africa (Ethiopia, Kenya and Tanzania), and extends the range of Catabrosa from northwestern Africa to southern Africa.     

Distinct haplotypes and free movement of Aedes aegypti in Port Sudan,Sudan

Any attempt to control a mosquito-borne disease should primarily focus on controlling its vector. In Sudan, arboviral infections are a major health problem where periodical outbreaks of arboviruses transmitted by Aedes aegypti have been reported. This preliminary study was performed to uncover the population genetic diversity of Aedes aegypti from Red Sea State, Sudan, using mtDNA-COI gene. We performed morphological identification, PCR and DNA nucleotide sequencing and analysed the genetic polymorphism, and isolation by distance of Aedes aegypti from four sites. Of the 55 samples successfully sequenced, six haplotypes were revealed. Global haplotype network revealed that the predominant haplotype in Sudan (Hap1; 31 sequences = 56.4%), the second most frequent haplotype (Hap2; 13 sequences = 23.6%) and Hap 5 (3.6%) were identical or genetically close to isolates seen in different countries distributed in the United States, South America, Europe, Asia and two African isolates, one from Kenya and the other from Europa Island (Mozambique Channel). Haplotype 4 (3.6%) appeared closely related to mosquitoes sampled from Cameroon, Kenya, Sri Lanka and India and belonged to a lineage that contained isolates from all over the geographical expansion. Haplotype 6 (1.8%) seemed quite distant from any other sequenced mtDNA. To summarize, four haplotypes were found only in Sudan, and one rare haplotype appeared genetically distant from all other haplotypes, suggesting a local origin. Subdivision measures and testing suggested a probable free (or almost free) migration between the different sites sampled.     

Broad wintering range and intercontinental migratory divide within a core population of the near‐threatened pallid harrier

Aim To identify the migration routes and wintering grounds of the core populations of the near‐threatened pallid harrier, Circus macrourus, and highlight conservation needs associated with these phases of the annual cycle. Location Breeding area: north‐central Kazakhstan; Wintering areas: Sahel belt (Burkina Faso to Ethiopia) and north‐west India. Methods We used ring recovery data from Kazakhstan and satellite tracking data from 2007 to 2008 on six adults breeding in north‐central Kazakhstan to determine migration routes and locate wintering areas. In addition, one first‐year male was tagged in winter 2007–2008 in India. Results Data evidenced an intercontinental migratory divide within the core pallid harrier population, with birds wintering in either Africa or India. The six individuals tagged in north‐central Kazakhstan followed a similar route (west of the Caspian Sea and Middle East) towards east Africa, before spreading along the Sahel belt to winter either in Sudan, Ethiopia, Niger or Burkina Faso. Spring migration followed a shorter, more direct route, with marked interindividual variation. The bird tagged in India spent the summer in central Kazakhstan. Half of the signal losses (either because of failure or bird mortality) occurred on the wintering areas and during migration. Main conclusions Our study shows that birds from one breeding area may winter over a strikingly broad range within and across continents. The intercontinental migratory divide of pallid harriers suggests the coexistence of distinct migratory strategies within the core breeding population, a characteristic most likely shared by a number of threatened species in central Asia. Conservation strategies for species like the pallid harrier, therefore, require considering very large spatial scales with possibly area‐specific conservation issues. We highlight urgent research priorities to effectively inform the conservation of these species.     

Ten years experience with 497 cases of neuroinfections in tropic: in limited laboratory infrastructure initially treat both, cerebral malaria and meningitis

Review of 497 cases of neuroinfections in 7 tropical clinics in Ethiopia, Uganda, Burundi, Kenya, Sudan within 2000-2007 was performed. 97.5% of all cases was cerebral malaria (40.1%) and bacterial meningitis (56.4%). TB meningitis, cerebral cryptococcosis and sleeping sickness were very rare.     

Geographical variation in the response of visceral leishmaniasis to paromomycin in East Africa: a multicentre, open-label, randomized trial

Background

Visceral leishmaniasis (VL) is a major health problem in developing countries. The untreated disease is fatal, available treatment is expensive and often toxic, and drug resistance is increasing. Improved treatment options are needed. Paromomycin was shown to be an efficacious first-line treatment with low toxicity in India.

Methods

This was a 3-arm multicentre, open-label, randomized, controlled clinical trial to compare three treatment regimens for VL in East Africa: paromomycin sulphate (PM) at 15 mg/kg/day for 21 days versus sodium stibogluconate (SSG) at 20 mg/kg/day for 30 days; and the combination of both dose regimens for 17 days. The primary efficacy endpoint was cure based on parasite-free tissue aspirates taken 6 months after treatment.

Findings

Overall, 135 patients per arm were enrolled at five centres in Sudan (2 sites), Kenya (1) and Ethiopia (2), when the PM arm had to be discontinued due to poor efficacy. The trial has continued with the higher dose of PM as well as the combination of PM and SSG arms. These results will be reported later. Baseline patient characteristics were similar among treatment arms. The overall cure with PM was significantly inferior to that with SSG (63.8% versus 92.2%; difference 28.5%, 95%CI 18.8% to 38.8%, p<0.001). The efficacy of PM varied among centres and was significantly lower in Sudan (14.3% and 46.7%) than in Kenya (80.0%) and Ethiopia (75.0% and 96.6%). No major safety issues with PM were identified.

Conclusion

The efficacy of PM at 15 mg/kg/day for 21 days was inadequate, particularly in Sudan. The efficacy of higher doses and the combination treatment warrant further studies.     

Updated geographic range maps for giraffe,Giraffa spp., throughout sub‐Saharan Africa,and implications of changing distributions for conservation

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Using sample aerial surveys to estimate the abundance of the endangered Grevy’s zebra in northern Kenya

The effective management of endangered mammals requires reliable estimates of population size. This is challenging for species such as Grevy’s zebra (Equus grevyi) that are distributed over large areas at low densities. Less than 2500 Grevy’s zebra remain in the wild, scattered across 85,000 km² of savannah in northern Kenya and Ethiopia. An efficient, accurate and repeatable survey method is required to guide conservation planning for the species. Currently, total aerial counts are used to census endangered species within Kenya, but are costly in terms of resources. In this study, we evaluated the suitability of sample survey methods for Grevy’s zebra. We estimated population size using sample aerial counts for a known population of Grevy’s zebra in Lewa Wildlife Conservancy (LWC), providing the opportunity to test the accuracy of sample methods, while comparing resource costs with total count methods. We sampled one‐third of LWC using parallel 500‐ m strip transects at 1500‐ m intervals. The population estimate was comparable to the known population size and was less than half as expensive as the equivalent total count survey. Our results suggest sample aerial surveys provide an accurate and cost‐effective means of monitoring Grevy’s zebra and other endangered species in open habitats.