Y-chromosome Data and Tribal Affiliations of Allenopithecus and Miopithecus

The phylogeny of Old World monkeys has remained unresolved in part because of a lack of resolution in the Cercopithecinae. Competing morphological hypotheses have had Allen's swamp monkey (Allenopithecus nigroviridis) and the talapoins (Miopithecus spp.) as basal branches of either the tribe Cercopithecini or the tribe Papionini. Previous molecular analyses have not adequately addressed the issue. To better understand the evolutionary history of these primates, we sequenced and subjected to phylogenetic analysis 3.1 kb of 2 loci (TSPY and SRY) from the non-recombining portion of the Y-chromosome. Individuals from the genera Allenopithecus, Miopithecus, Erythrocebus, Chlorocebus, and Cercopithecus were surveyed and their sequences compared with those previously published for the Papionini and Colobinae. The results suggest Allenopithecus and Miopithecus are more closely related to the Cercopithecini than Papionini. Our data also support the hypothesis that within the Cercopithecini, Erythrocebus and Chlorocebus share a close evolutionary relationship, distinct from the other members of the tribe.     

Phylogenetic Reconstruction by Cross-Species Chromosome Painting and G-Banding in Four Species of Phyllostomini Tribe (Chiroptera,Phyllostomidae) in the Brazilian Amazon: An Independent Evidence for Monophyly

The subfamily Phyllostominae comprises taxa with a variety of feeding strategies. From the cytogenetic point of view, Phyllostominae shows different rates of chromosomal evolution between genera, with Phyllostomus hastatus probably retaining the ancestral karyotype for the subfamily. Since chromosomal rearrangements occur rarely in the genome and have great value as phylogenetic markers and in taxonomic characterization, we analyzed three species: Lophostoma silvicola (LSI), Phyllostomus discolor (PDI) and Tonatia saurophila (TSA), representing the tribe Phyllostomini, collected in the Amazon region, by classic and molecular cytogenetic techniques in order to reconstruct the phylogenetic relationships within this tribe. LSA has a karyotype of 2n=34 and FN=60, PDI has 2n=32 and FN=60 and TSA has 2n=16 and FN=20. Comparative analysis using G-banding and chromosome painting show that the karyotypic complement of TSA is highly rearranged relative to LSI and PHA, while LSI, PHA and PDI have similar karyotypes, differing by only three chromosome pairs. Nearly all chromosomes of PDI and PHA were conserved in toto, except for chromosome 15 that was changed by a pericentric inversion. A strongly supported phylogeny (bootstrap=100 and Bremer=10 steps), confirms the monophyly of Phyllostomini. In agreement with molecular topologies, TSA was in the basal position, while PHA and LSI formed sister taxa. A few ancestral syntenies are conserved without rearrangements and most associations are autapomorphic traits for Tonatia or plesiomorphic for the three genera analyzed here. The karyotype of TSA is highly derived in relation to that of other phyllostomid bats, differing from the supposed ancestral karyotype of Phyllostomidae by multiple rearrangements. Phylogenies based on chromosomal data are independent evidence for the monophyly of tribe Phyllostomini as determined by molecular topologies and provide additional support for the paraphyly of the genus Tonatia by the exclusion of the genus Lophostoma.     

Cladistic analysis of cercopithecid relationships

The phyletic relationships of cercopithecid higher taxa are fairly well understood. By reference to the outgroup Hominoidea, character state distributions for a variety of dental, cranial and posteranial features are reviewed and morphotypes are presented for supra-generic taxa. Cercopithecids show 13 derived conditions relative to the eucatarrhine morphotype. Cercopithecines are further derived by eight features while the colobine morphotype shows an additional nine synapomorphies, including three newly identified pedal features. Within Cercopithecinae, the tribes Papionini and Cercopithecini are each characterized by several derived states. In turn, each tribe includes a relatively conservative and a more derived clade, recognized at the subtribal level: Macacina and Papionina (including the previously recognized Theropithecina) for Papionini: and the newly defined Allenopithecina and Cercopithecina among Cercopithecini. The distinctions within Colobinae appear comparable to those defining cercopithecine subtribes, and two taxa are accepted at that rank: the African Colobina, defined by three derived states: and the possibly paraphyletic Asian Presbytina. Piliocolobus shares four synapomorphies with Procolobus and therefore is ranked as a subgenus of that taxon. The hypothesis that Dolichopithecus is the direct descendant of Mesopithecus is weakened on the basis of contrary pedal evidence.     

Patterns of evolution in Graomys griseoflavus (Rodentia,Muridae). IV. A case of rapid speciation

The South American group of rodents known as Graomys griseoflavus comprises two sibling species differing only in diploid chromosomal complement: G. griseoflavus (2n = 36, 37 and 38) and G. centralis (2n=42). Reproductive barriers comprising postzygotic as well as precopulatory mechanisms prevent gene exchange between these species. We have studied genetic polymorphism in two populations of G. centralis and four of G. griseoflavus by means of gel electrophoresis of enzymes and other proteins giving information on a total of 30 loci. Values of interspecific genetic identity were similar to those obtained for conspecific populations, suggesting that fixation of Robertsonian fusions would have occurred without significant bottlenecks. It would also indicate that the cladogenetic process must be relatively recent. F_IS values showed no evidence of inbreeding. Fixation indices (F_ST) for the ancestral species showed a tendency to form demes with very low gene flow among them, while in the derived species such tendency was not shown. However, because of the characteristics of the region they occupy, populations are of moderate size, and genic flow is low. Lack of correlation between gene flow levels and geographical distance between population pairs would indicate a recent and fast colonization of its distribution areas by the derived species. It is possible that fixation of Robertsonian fusions occurred in a marginal deme of the ancestral species, e.g. in a parapatric geographical context.     

Banded karyotypes of 20 Papionini species reveal no necessary correlation with speciation

The G-banded karyotypes of 20 species of the tribe Papionini are remarkably similar, and the amount of phylogenetic interpretation permitted is limited. The genera Mandrillus and Cercocebus may be linked by a derived chromosome 10. T. gelada may be linked to the macaques by chromosome 2. Chromosome 5, which differs in M. fascicularis, makes this species an unlikely ancestor of the Sulawesi (Celebes) macaques. An alternate hypothesis, which takes into consideration the possibility that ancestral populations may be polymorphic for these chromosome variants, suggests that different chromosome variants have become fixed in different lines. These chromosomes would therefore not reflect phylogenetic relations. In the Papionini the karyotype has not played a major role in diversification and speciation.     

Patterns of replication in the neo-sex chromosomes ofDrosophila nasuta albomicans

Drosophila nasuta albomicans (with 2n = 6), contains a pair of metacentric neo-sex chromosomes. Phylogenetically these are products of centric fusion between ancestral sex (X, Y) chromosomes and an autosome (chromosome 3). The polytene chromosome complement of males with a neo-X- and neo-Y-chromosomes has revealed asynchrony in replication between the two arms of the neo-sex chromosomes. The arm which represents the ancestral X-chromosome is faster replicating than the arm which represents ancestral autosome. The latter arm of the neo-sex chromosome is synchronous with other autosomes of the complement. We conclude that one arm of the neo-X/Y is still mimicking the features of an autosome while the other arm has the features of a classical X/Y-chromosome. This X-autosome translocation differs from the other evolutionary X-autosome translocations known in certain species ofDrosophila.     

Qualitative analysis of constitutive heterochromatin and primate evolution

The results of qualitative heterochromatin analysis in 16 species of primates: Homo sapiens , Pan troglodytes and Gorilla gorilla (F. Hominidae), Hylobates syndactilus (F. Hylobatidae), Macaca fascicularis , M. tibetana , Mandrillus sphinx , M. leucophaeus , Cercopithecus aethiops , C. sabaeus and C. albogularis (F. Cercopithecidae), Cebus apella , Ateles belzebuth hybridus , Aotus azarae , Saimiri sciureus and Lagothrix lagothricha (F. Cebidae) are presented in this work. We characterized heterochromatin using: (a) in situ digestion with restriction enzymes AluI, HaeIII, RsaI and Sau3A, and (b) chromosome staining with DA/DAPI on unbanded chromosomes, on C-banded chromosomes and on sequentially G-C-banded chromosomes. The aim of this work was to relate the qualitative characteristics of constitutive heterochromatin observed with the cytogenetic evolutive processes in the primate group. Results obtained show that (1) in the family Cercopithecidae, Papionini species do not present chromosomal rearrangements when their karyotypes are compared and the heterochromatin characteristics are uniform, while Cercopithecini species show a high number of chromosomal reorganizations, but they have the same heterochromatic characteristics; (2) the Platyrrhini species analysed show variability in their karyological and heterochromatic characteristics; (3) the Hominoidea present two different situations: Pan , Gorilla and Homo with few chromosomal reorganizations among their karyotypes but with a high variability in their heterochromatin characteristics, and Hylobates with low heterochromatin variability and a highly derived karyotype. Speciation processes related to chromosome changes and heterochromatin variations in different groups of primates are discussed.  © 2003 The Linnean Society of London, Biological Journal of the Linnean Society , 2003, 80 , 107–124.     

Chromosome differentiation of four 2n = 50 chromosomal forms of Turkish mole rat, Nannospalax nehringi

Nannospalax is a genus of blind rodents adapted to living in underground. The species have numerous chromosomal forms in Turkey, and their taxonomic position is still unknown. In this study, 15 mole rats of four different 2n = 50 forms were used; C- and G- banding processes were applied; and a comparison was made accordingly. Karyological results showed that the 2n = 50S form is a new form for Turkish blind mole rats. 2n = 50S form is determined from Andirin (Kahramanmara?) and has NF = 70. The 2n = 50W form, on the other hand, differs from the others with NF = 74 form. C-banding results showed that heterochromatin blocks of all 2n = 50 are different, while only the 2n = 50W form has telomeric heterochromatin blocks. G-banding results, however, displayed homologies and differences among the chromosomal forms. After comparison, we determined that Robertsonian fusion is an efficient force on chromosomal evolution in blind mole rats in Turkey, and that telomeric heterochromatin is a distinctive character for the 2n = 50W form. We suggest that the chromosomal changing mechanism should be independent from climatic peculiarities. These results support the theory that ancestral karyotype should have the largest distribution in a chromosomally variable species.     

Forest monkeys and Pleistocene refugia: a phylogeographic window onto the disjunct distribution of the Chlorocebus lhoesti species group

The reconstruction of evolutionary relationships among a group of closely‐related taxa provides a valuable window onto their biogeographic history. This is the first such molecular phylogenetic study to survey all three taxa of the Chlorocebus lhoesti species group, a group of Old World monkeys that includes C. lhoesti, Chlorocebus preussi, and Chlorocebus solatus. Representatives of each species were surveyed for two Y‐chromosomal genes, TSPY (～2240 bp) and SRY (～780 bp), and one X‐chromosomal intergenic region (～9300 bp) homologous to a portion of human Xq13.3. Maximum likelihood topologies inferred from these sequences confirm that the lhoesti group is monophyletic within the tribe Cercopithecini, as suggested by earlier karyotype studies. Within this group, C. lhoesti (Albertine region) and C. preussi (Cameroon, Nigeria, Bioko) cluster to the exclusion of C. solatus (Gabon). This phylogeographic pattern, evaluated in the context of Pleistocene glacial cycles and lhoesti group ecology, suggests: (1) the common ancestor of the group probably arose in west central Africa, (2) dispersal to the Albertine region is likely to have occurred during a glacial maximum, rather than an interglacial pluvial, and (3) this dispersal probably occurred via a path north of the Congo Basin. Divergence date calculations suggest C. solatus separated from the ancestral stock at ～2.1 Ma, whereas C. preussi and C. lhoesti bifurcated later, at ～0.5 Ma. Taken together, these evolutionary analyses draw attention to one period in the Pleistocene (～0.5 MYA) when a dispersal corridor suitable to montane taxa is likely to have connected the highlands of east central and west central Africa. © 2008 The Linnean Society of London, Zoological Journal of the Linnean Society, 2008, 154 , 408–418.     

Tandem and centric fusions in the chromosomal evolution of the South American phyllotines of the genus Auliscomys (Rodentia, cricetidae).

The karyotypes of three of the four extant species of the genus Auliscomys (A. micropus, living in central [2n = 32, NF = 34] and southern [2n = 34, NF = 36, 37] Chile; A. sublimis [2n = 28, NF = 32] and A. boliviensis [2n = 22, NF = 32], which inhabit the Andean Altiplano) were analyzed. Comparisons of G-, C-, and AgNOR-banded karyotypes showed that extensive conservation of entire chromosomes and chromosomal regions had occurred during the evolution of this genus, with centromeretelomere tandem fusions and centric fusions probably being the most frequent chromosome changes. A chromosomal phylogeny, based on the chromosome homoeologies detected and parsimonious analysis of the nature and distribution of the inferred chromosomal changes, is proposed. This hypothetical phylogeny assumes that the ancestral telocentric karyotype would have undergone three consecutive tandem fusions, first originating the 2n = 32 (NF = 34) karyomorph exhibited by present-day specimens of A. micropus captured in central Chile and then the 2n = 28 (NF = 32) karyotype of A. sublimis. Subsequent centric fusions involving the tandem-fusion products would presumably have generated the 2n = 22 (NF = 32) A. boliviensis karyotype. Assuming some conditions related to early geographic distribution, this chromosomal phylogeny is in agreement with a paleogeographic model, which explains the present distribution of living Auliscomys species mainly on the basis of geologic and climatic events.(ABSTRACT TRUNCATED AT 250 WORDS)     

Inter- and intra-genomic homology of the Brassica genomes: implications for their origin and evolution

In order to determine the homologous regions shared by the cultivated Brassica genomes, linkage maps of the diploid cultivated B. rapa (A genome, n = 10), B. nigra (B genome, n = 8) and B. oleracea (C genome, n = 9), were compared. We found intergenomic conserved regions but with extensitve reordering among the genomes. Eighteen linkage groups from all three species could be associated on the basis of homologous segments based on at least three common markers. Intragenomic homologous conservation was also observed for some of the chromosomes of the A, B and C genomes. A possible chromosome phylogenetic pathway based on an ancestral genome of at least five, and no more than seven chromosomes, was drawn from the chromosomal inter-relationships observed. These results demonstrate that extensive duplication and rearrangement have been involved in the formation of the Brassica genomes from a smaller ancestral genome.     

Phylogenomics of several deer species revealed by comparative chromosome painting with Chinese muntjac paints

A set of Chinese muntjac (Muntiacus reevesi) chromosome-specific paints has been hybridized onto the metaphases of sika deer (Cervus nippon, CNI, 2n = 66), red deer (Cervus elaphus, CEL, 2n = 62) and tufted deer (Elaphodus cephalophus, ECE, 2n = 47). Thirty-three homologous autosomal segments were detected in genomes of sika deer and red deer, while 31 autosomal homologous segments were delineated in genome of tufted deer. The Chinese muntjac chromosome X probe painted to the whole X chromosome, and the chromosome Y probe gave signals on the Y chromosome as well as distal region of the X chromosome of each species. Our results confirmed that exclusive Robertsonian translocations have contributed to the karyotypic evolution of sika deer and red deer. In addition to Robertsonian translocation, tandem fusions have played a more important role in the karyotypic evolution of tufted deer. Different types of chromosomal rearrangements have led to great differences in the genome organization between cervinae and muntiacinae species. Our analysis testified that six chromosomal fissions in the proposed 2n = 58 ancestral pecoran karyotype led to the formation of 2n = 70 ancestral cervid karyotype and the deer karyotypes is more derived compare with those of bovid species. Combining previous cytogenetic and molecular systematic studies, we analyzed the genome phylogeny for 11 cervid species.     

Chromosome homologies between tsessebe (Damaliscus lunatus) and Chinese muntjac (Muntiacus reevesi) facilitate tracing the evolutionary history of Damaliscus (Bovidae, Antilopinae, Alcelaphini)

Genome-wide homologies between the tsessebe (Damaliscus lunatus, 2n = 36) and Chinese muntjac (Muntiacus reevesi, 2n = 46) have been established by cross-species painting with Chinese muntjac chromosome paints. Twenty-two autosomal painting probes detected 35 orthologous segments in the tsessebe. Hybridization results confirmed that: (i) D. lunatus carries the (9;14) reciprocal translocation that has been proposed to be a derived chromosomal landmark shared by all species of the Antilopinae; (ii) the karyotype of D. lunatus can be derived almost exclusively from the bovid ancestral karyotype through 12 Robertsonian translocations involving 24 ancestral acrocentric autosomes; (iii) in addition to the Rb fusions, pericentric heterochromatic amplification has shaped the morphology of several of the D. lunatus chromosomes. Integrated analysis of these and published cytogenetic data on pecorans has allowed us to accurately discern the karyotype history of Damaliscus (D. lunatus; D. pygargus, 2n = 38; D. hunteri, 2n = 44). The phylogenomic relationships of 3 species reflected by specific chromosomal rearrangements were consistent with published phylogenies based on morphology, suggesting that chromosomal rearrangements have played an important role in speciation within the Alcelaphini, and that karyotype characters are valuable phylogenetic markers in this group.     

CHROMOSOME NUMBERS AND PHYLOGENY IN MELAMPODIUM (COMPOSITAE)

The haplord chromosome numbers of n = 9, 10, 11, 12, 18, 20, 23, 25 ± 1, 27, 30, and 33 have been reported by various authors from 26 of the 37 recognized species of Melampodium. A chromosomal survey of 375 plants from 275 different populations suggests that the recorded numbers are stable within the genus and that infraspecific euploidy and aneuploidy are uncommon. These chromosome numbers can be arranged numerically, with morphological and limited cytogenetic substantiation, into four euploid series of x2 = 9, 10, 11, and 12. Of these four groups of species, the x = 10 series is the largest and morphologically most diverse. This consideration, along with additional evidence from the morphology of sterile disc ovaries, suggests that x = 10 is the ancestral chromosomal base in Melampodium. A comparison of morphological and cytological data from the closely related genera, Acanthospermum and Lecocarpus, indicates that the latter are probably on a common base of x = 11. Present day distributional patterns of all three genera support the hypothesis that x = 10 is the ancestral base for the entire complex.     

Karyotypic evolution in Gehyra (Gekkonidae: Reptilia) IV. Chromosome change and speciation

Karyotypic data are presented for six additional species from the genus Gehyra collected in Australia, New Guinea and Fiji. C and G-banding of three of the very diverse species which all share the ancestral 2n=44 karyotype, further strengthens the phylogenetic model for the evolution of this complex. With 19 Australian species and chromosome races of Gehyra now karyotyped, it has been possible to evaluate the mode of chromosomal evolution and the role that chromosome change has played in speciation in this genus. It is clear that speciation in certain karyomorph groups has occurred allopatrically, without any gross chromosomal changes. However, in the numerous chromosome races and species which have been involved in colonizing radiations, chromosomal rearrangements have been intricately associated with the speciation process.     

The cytogenetic structure of Vicia sativa aggregate

Summary The cytogenetic structure of Vicia sativa aneuploid series was assessed by examination of the chromosome pairing in hybrids between types having 2n = 10, 2n = 12 and 2n = 14. Two different karyotypes were distinguished at both the 2n = 10 and 2n = 12 levels. Chromosome pairing in hybrids involved two 2n = 10 karyotypes, indicating that the parental lines differed by two translocations. A similar indication was obtained for the two 2n = 12 karyotypes employed. The meiotic behavior of the 2n = 10 x 2n = 12 hybrids indicated that the parental lines differed by up to three translocations, some of which involved unequal chromosome segments. It has been proposed that the 2n = 10 types were developed from the 2n = 12 via centric or tandem fusion and additional rearrangements further accelerated chromosome repatterning at the two 2n levels. Hybrids between the 2n = 14 V. sativa and the former 2n types had very irregular chromosome pairing and were highly sterile. It has been proposed that the 2n = 14 type is a relatively new evolvement in V. sativa because of its shorter complement in comparison with the other karyotypes. The subterraneous pods of the 2n = 14 type, a characteristic which is absent in other V. sativa types and in the entire genus Vicia, also supports an advanced, phylogenetic position. The 2n = 14 type probably arose from n = 7 gametes produced by the 2n= 12 x 2n = 10 hybrid and the establishment of the row 2n = 14 type was acquired through conspicuous chromosome deletions. In spite of its remarkable chromosomal variation, V. sativa can still be considered, for breeding purposes, as being one gene pool. The wild forms of V. sativa can thus be valuable sources for improving the cultivated vetch.     

Evolution of the genome size inAkodon (Rodentia,Cricetidae)

Nuclear DNA contents were estimated by microdensitometry in five species of Akodon rodents: Arodon molinae, A. dolores, A. mollis, A. azarae, Bolomys obscurus) and in three chromosomal varieties of A. molinae (2n = 42; 2n = 43, 2n = 22). The data obtained showed that the species with the highest DNA content was B. obscurus, followed in order of decreasing genome size by A. molinae, A. mollis, A. dolores and A. azarae. In A. molinae the forms with 2n = 42 chromosomes had the lowest and the forms with 2n = 44 the highest amount of DNA, while the forms with 2n = 43 had intermediate DNA contents. The variation in DNA amount detected in A. molinae was interpreted as a phenomenon of amplification occurring in the chromosomal areas involved in the chromosomal rearrangement giving rise to the polymorphism exhibited by this species. The DNA contents of shared chromosomes (chromosomes with similar size, morphology and G banding pattern, which are found in two or more phylogenetically related species), were compared and correlated with values of total nuclear DNA. The information obtained indicates that: (a) shared chromosomes have variable amounts of DNA: (b) in a given species there is a correlation between the amount of nuclear and chromosomal DNA in most shared chromosomes (and perhaps in most of the chromosomal complement), e.g., the higher the amount of nuclear DNA, the higher the content of DNA in shared chromosomes; (c) some chromosomes may undergo processes of amplification or deletion restricted to certain regions and usually related with mechanisms of chromosomal rearrangements.(ABSTRACT TRUNCATED AT 250 WORDS)     

Homologies in human and Macasa fuscata chromosomes revealed by in situ suppression hybridization with human chromosome specific DNA libraries

We established chromosomal homologies between all chromosomes of the human karyotype and that of an old world monkey (Macaca fuscata) by chromosomal in situ suppression (CISS) hybridization with human chromosome specific DNA libraries. Except for the human chromosome 2 library and limited cross-hybridization of X and Y chromosome libraries all human DNA libraries hybridized to single GTG-banded macaque chromosomes. Only three macaque chromosomes (2, 7, 13) were each hybridized by two separate human libraries (7 and 21, 14 and 15, 20 and 22 respectively). Thus, an unequivocally high degree of synteny between human and macaque chromosomes has been maintained for more than 20 million years. As previously suggested, both Papionini (macaques, baboons, mandrills and cercocebus monkeys, all of which have nearly identical karyotypes) and humans are chromosomally conservative. The results suggest, that CISS hybridization can be expected to become an indispensable tool in comparative chromosome and gene mapping and will help clarify chromosomal phylogenies with speed and accuracy.by E.R. Schmidt     

Further insights into the ancestral murine karyotype: the contribution of the Otomys-Mus comparison using chromosome painting

The African vlei rat, Otomys irroratus, comprises several distinct chromosomal races that may be grouped into two major cytogenetic clades. Recognition of these clades is underpinned by a complex chromosomal rearrangement involving three different autosomes in the unfused state. We have used unidirectional fluorescence in situ hybridization (FISH) of mouse chromosome-specific painting probes to molecularly define the components of this rearrangement as well as to establish the chromosomal homologies between the mouse and the vlei rat genomes. This has allowed for the detection of 41 autosomal segments of conserved synteny. Nine mouse chromosomes were conserved in toto (MMU3, 4, 6, 7, 11, 12, 14, 18, 19) with a further seven (MMU2, 5, 8, 9, 10, 13, 16) showing homology to two discrete regions in the vlei rat genome. Two mouse autosomes (MMU15, 17) correspond to three regions in O. irroratus with MMU1 being the most fragmented showing five sites of hybridization in this species. By mapping these data to published sequence-based phylogenies we are able to confirm most of the published putative ancestral murine chromosomal states. Our data further indicate that MMU15a+ MMU13b+MMU10b+MMU17b was present in the murine ancestral karyotype suggesting an ancestral 2n = 52 rather than the 2n = 54 previously postulated.