A Study of the Decomposition of Reed (Phragmites australis ) as a Possible Source of Aquatic Humic Substances by Measuring the Natural Abundance of Stable Carbon Isotopes

The decomposition of leaf and steam litter of reed (P. australis) was measured both in the field and in the laboratory. The breakdown rates, the total carbon and the stable carbon isotope dynamics of reed litter were determined. The stable carbon isotope ratios of isolated humic substances (fulvic and humic acids) were also analysed. The δ¹³C value in reed remains increased from –26‰ to –24‰ for stems and from –27‰ to –26‰ for leaves. The dissolved fulvic and humic acids isolated from the experimental bottles (mean δ¹³C was –27.6‰) and the reservoir water were depleted in ¹³C (mean δ¹³C was –28.6‰) relative to the reed remains. The results show that reed litter is an important source of coloured aquatic humic substances. (© 2006 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Plasma amino acids in four models of experimental liver injury in rats

Summary We studied the plasma amino acid profiles in four models of hepatic injury in rats. In partially hepatectomized rats (65% of liver was removed) we observed significant increase of aromatic amino acids (AAA; i.e. tyrosine and phenylalanine), taurine, aspartate, threonine, serine, asparagine, methionine, ornithine and histidine. Branched-chain amino acids (BCAA; i.e. valine, leucine and isoleucine) concentrations were unchanged. In ischemic and carbon tetrachloride acute liver damage we observed extreme elevation of most of amino acids (BCAA included) and very low concentration of arginine. In carbon tetrachloride induced liver cirrhosis we observed increased levels of AAA, aspartate, asparagine, methionine, ornithine and histidine and decrease of BCAA, threonine and cystine. BCAA/AAA ratio decreased significantly in partially hepatectomized and cirrhotic rats and was unchanged in ischemic and acute carbon tetrachloride liver damage. We conclude that a high increase of most of amino acids is characteristic of fulminant hepatic necrosis; decreased BCAA/AAA ratio is characteristic of liver cirrhosis; and decrease of BCAA/AAA ratio may not be used as an indicator of the severity of hepatic parenchymal damage.Abbreviations BCAA branched-chain amino acids (i.e. valine, leucine and isoleucine) - AAA aromatic amino acids (i.e. tyrosine and phenylalanine)     

Composition and variations in the occurrence of dissolved free simple organic compounds of an unproductive lake ecosystem in northern Sweden

Low molecular weight organic carbon compounds are potentially important carbon and energy substrates to heterotrophic production in the aquatic environment. We studied the occurrence of dissolved free amino acids (AA), monosaccharides (CHO), and carboxylic acids (CA) in the subarctic Lake Diktar-Erik. The lake is unproductive with slightly humic water, and receives water via one major inlet stream draining a birch forest environment. The concentration of dissolved organic carbon (DOC) in the inlet stream was strongly correlated with the discharge. This relationship changed from season to season, indicating changes in the sources of the DOC entering the stream. AA and CHO each accounted for an average of less than 0.5% of the DOC. After high discharge events during the ice-free period, AA and CHO occurred in especially high concentrations. CA occurred in higher concentrations during the ice-free period, when it generally accounted for 20–30% of the DOC pool. The CA content relative to the total DOC pool was strongly inversely correlated with overall DOC concentration, and at low DOC levels the relative content of CA was high and vice versa. This followed a seasonal trend, with CA accounting for a smaller proportion of the DOC in winter and a larger part in spring/early summer. A conservative estimate suggested that the studied simple organic carbon compounds potentially could cover 30% of the bacterial gross production in the lake and therefore potentially also was an important source of CO₂ that occur in supersaturated concentrations in the lake.     

PYRENE INTERCALATING NUCLEIC ACIDS WITH A CARBON LINKER

We have synthesized a carbon linker analogue of INA (oligonucleotides containing insertions of 1-O-(1-pyrenylmethyl)glycerol). Thermal stability studies showed an increase in melting temperature in favor of the carbon linker analogue. We also synthesized a carbon linker analogue with two pyrenes geminally attached. Fluorescence studies of this intercalating nucleic acid with the pyrene moieties inserted as a bulge showed formation of an excimer band. When a mismatch was introduced at the site of the intercalator, an excimer band was formed for the destabilized duplexes whereas an exciplex band was observed when the stability of the duplex was retained.     

Transformations of carbon and nitrogen in a Calciorthid soil amended with a range of organic residues

A calcareous soil was treated with an organic fertilizer mixture of grape debris and peat, or with pig manure, chicken manure, city refuse or with aerobic or anaerobic sewage sludges. Changes in different fractions of carbon and nitrogen were followed by analysis of the soil, immediately after these additions, after they had decomposed for six months in the soil, after a maize harvest, and after a subsequent barley harvest. The various forms of carbon had decreased after six months. The rate of decrease varied with the nature of the organic materials. In all samples, the fulvic acids fraction decreased most. The main transformations happened during the first six months whether there was a crop growing or not, but the crops had no influence on the breakdown of the organic materials. The ratio of humic acids/fulvic acids had increased after six months of humification and, in general terms, the final values of the ratio oxidizable carbon/extractable carbon were lower than the initial ones, indicating a higher degree of humification in the organic matter by the end of the experiment. The total nitrogen level remained practically constant after the first six months of humification even after the second crop. Part of the organic nitrogen of the soil samples amended with chicken manure, city refuse or the two sludges was transformed into mineral nitrogen during the humification process. The extractable nitrogen values increased because of the fertilizer applied during the pot trials.     

嗜热子囊菌利用短链有机酸生产角质酶

以嗜热子囊菌(Thermobifida fusca WSH03-11)发酵生产角质酶为模型,研究微生物利用市政污泥厌氧酸化所产短链有机酸为碳源发酵生产高附加值产品的可能。发现：(1)以丁酸、丙酸和乙酸为碳源时,有机酸和氮元素浓度分别为8.0 g/L和1.5 g/L有利于角质酶的生产;而以乳酸为碳源时,最适有机酸和氮源浓度分别为3.0 g/L和1.0 g/L;(2)改变诱导物角质的浓度,以丁酸、丙酸、乙酸和乳酸为碳源,分别比优化前提高了31.0%、13.3%、43.8%和73.2%;(3)在四种有机酸中,T. fusca WSH03-11利用乙酸的速率最快,平均比消耗速率是丙酸的1.3倍,丁酸的2.0倍及乳酸的2.2倍;以丁酸为碳源时的酶活(52.4 U/mL)是乳酸的1.7倍、乙酸的2.5倍和丙酸的3.2倍;角质酶对乳酸的得率(12.70 u/mg)分别是丁酸的1.4倍、丙酸的3.0倍和乙酸的3.8倍;(4)以混合酸为碳源生产角质酶,T. fusca WSH03-11优先利用乙酸,而对丁酸的利用受到抑制。进一步研究发现,混合酸中0.5 g/L的乙酸将导致丁酸的消耗量降低66.7%。这是首次利用混合酸作碳源发酵生产角质酶的研究报道。这一研究结果进一步确证了利用市政污泥厌氧酸化所产有机酸为碳源发酵生产高附加值产品的可行性,为以廉价碳源生产角质酶奠定了良好的基础。     

嗜热子囊菌利用短链有机酸生产角质酶

以嗜热子囊菌(Thermobifida fusca WSH03-11)发酵生产角质酶为模型,研究微生物利用市政污泥厌氧酸化所产短链有机酸为碳源发酵生产高附加值产品的可能。发现：(1)以丁酸、丙酸和乙酸为碳源时,有机酸和氮元素浓度分别为8.0 g/L和1.5 g/L有利于角质酶的生产;而以乳酸为碳源时,最适有机酸和氮源浓度分别为3.0 g/L和1.0 g/L;(2)改变诱导物角质的浓度,以丁酸、丙酸、乙酸和乳酸为碳源,分别比优化前提高了31.0%、13.3%、43.8%和73.2%;(3)在四种有机酸中,T. fusca WSH03-11利用乙酸的速率最快,平均比消耗速率是丙酸的1.3倍,丁酸的2.0倍及乳酸的2.2倍;以丁酸为碳源时的酶活(52.4 U/mL)是乳酸的1.7倍、乙酸的2.5倍和丙酸的3.2倍;角质酶对乳酸的得率(12.70 u/mg)分别是丁酸的1.4倍、丙酸的3.0倍和乙酸的3.8倍;(4)以混合酸为碳源生产角质酶,T. fusca WSH03-11优先利用乙酸,而对丁酸的利用受到抑制。进一步研究发现,混合酸中0.5 g/L的乙酸将导致丁酸的消耗量降低66.7%。这是首次利用混合酸作碳源发酵生产角质酶的研究报道。这一研究结果进一步确证了利用市政污泥厌氧酸化所产有机酸为碳源发酵生产高附加值产品的可行性,为以廉价碳源生产角质酶奠定了良好的基础。     

The utilization of short-chain monocarboxylic acids as carbon sources for the production of gamma-linolenic acid by Mucor strains in fed-batch culture

The Fischer-Tropsch reaction water, which contains C₂ to C₅ monocarboxylic acids, generated as a co-product of the Sasol industrial oil-from-coal process, constitutes a potential cheap carbon substrate for the production of gamma-linolenic acid (GLA) by selced Mucor species. Three strains of Mucor were each grown in an air-lift reactor operated in a fed-batch, pH-stat mode under N-limitation with a mixture of C₂ to C₅ monocarboxylic acids as both pH titrant and carbon source. The production of GLA from this substrate was evaluated. Growth typically resulted in the rapid assimilation of acetic, n-butyric and n-valeric acids. Although propionic, iso-butyric and iso-valeric acids were assimilated to varying degrees, these acids accumulated in the culture. Mucor circinelloides CBS 203.28 gave the best results in that it assimilated 36% to 100% of each acid, had a biomass yield coefficient of 0.3 (calculated on acids utilized), and contained 28% crude oil, 84% of which comprised neutral lipids with a GLA content of 14.4%, giving 33 mg GLA/g biomass. GLA accumulation coincided with a decrease in the stearic-acid content of the neutral-lipid fraction. The results were comparable with previous results obtained with acetic acid and glucose as sole carbon sources, demonstrating the feasibility of producing GLA from the above mixture of organic acids.     

The second life of terrestrial and plastic carbon as nutritionally valuable food for aquatic consumers

Primary production is the basis for energy and biomolecule flow in food webs. Nutritional importance of terrestrial and plastic carbon via mixotrophic algae to upper trophic level is poorly studied. We explored this question by analysing the contribution of osmo- and phagomixotrophic species in boreal lakes and used ¹³C-labelled materials and compound-specific isotopes to determine biochemical fate of carbon backbone of leaves, lignin–hemicellulose and polystyrene at four-trophic level experiment. Microbes prepared similar amounts of amino acids from leaves and lignin, but four times more membrane lipids from lignin than leaves, and much less from polystyrene. Mixotrophic algae (Cryptomonas sp.) upgraded simple fatty acids to essential omega-3 and omega-6 polyunsaturated fatty acids. Labelled amino and fatty acids became integral parts of cell membranes of zooplankton (Daphnia magna) and fish (Danio rerio). These results show that terrestrial and plastic carbon can provide backbones for essential biomolecules of mixotrophic algae and consumers at higher trophic levels.     

Effect of Glucose on Glycine Requirement of Acanthamoeba castellanii*

SYNOPSIS. Acanthamoeba castellanii grows in a minimal medium (AMLIV) containing only arginine, methionine, leucine, isoleucine, and valine as sole nitrogen sources, other than vitamins, when glucose is the carbon source. With acetate as the carbon source, glycine must be added to AMLIV. Doubling time in AMLIV varies according to the ratio of amino acids concentrations. Several combinations yield T_d values of ～ 70 hr.     

Effect of acyl donor chain length and substitutions pattern on the enzymatic acylation of flavonoids

Rutin and esculin were enzymatically acylated with different aliphatic acids as acyl donors (fatty acids, dicarboxylic acids and ω-substituted fatty acids) by an immobilized lipase from Candida antarctica. The effect of the water content and the acyl donors pattern on the flavonoid initial acylation rate and conversion yield were investigated. The obtained results indicated that the water content of the medium has a strong effect on the performance of these reactions. The best conversion yields were reached when the water content was kept lower than 200 ppm. At low water content of the medium, these syntheses are influenced by carbon chain length and substitution pattern of the acyl donors. Higher conversion yields of esculin and rutin (>70%) were obtained with aliphatic acids having high carbon chain length (>12). Moreover, it has been found that the amine and thiol groups on ω-substituted fatty acid chain were unfavourable to these reactions. The ¹H NMR and ¹³C NMR analyses of some synthesized esters (esculin and rutin palmitate) show that only monoesters were produced and that the esterification takes place on the primary OH of glucose moiety of the esculin and on the secondary 4′′′-OH of the rhamnose residue of rutin.     

两种不同植物甾醇酯降血脂效果的比较研究

目的：研究两种不同植物甾醇酯对高脂血症大鼠的降血脂作用,并比较其差异。方法：通过饲喂高脂饲料,建立高脂血症大鼠模型,将建模成功的大鼠,按照TC水平随机分成8组,即模型对照组,溶剂对照组,Vegapure 95FF低、中、高剂量组,Vegapure 95E低、中、高剂量组,同时设立空白对照组。干预4周后,记录体重、进食量,并检测血清TC、LDL-C、TG、HDL-C、脂肪重量及体脂率、肝脏重量及肝脏指数等指标。结果：在实验剂量下,两种植物甾醇酯均明显降低血清TC、LDL-C,但均未发现有剂量效应关系;两种植物甾醇酯对血清TG、HDL-C无明显影响。两种植物甾醇酯对高脂血症SD大鼠体重增长、进食量、脂肪重量、体脂率、肝脏重量和肝脏指数均无明显影响。结论：两种植物甾醇酯在降低血脂、大鼠生长发育、体质和肝脏方面均无明显差异。     

Waxes of the social spider Anelosimus eximius (Araneae,Theridiidae): Abundance of novel n-propyl esters of long-chain methyl-branched fatty acids

The pentane extract of the social spider, Anelosimus eximius (Araneae, Theridiidae), contains hydrocarbons, fatty acids and their methyl esters, and a series of novel propyl esters of long-chain methyl-branched fatty acids. The propyl esters comprise almost three-fourths of the extract and consist predominantly of odd-numbered carbon chain components. Mass spectrometric analyses of the propyl esters, their methyl esters and cyanide derivatives showed that mono-, di- and trimethyl branched components with methyl branches on even numbered carbons predominate. The major components are propyl 4,20- and 4,30-dimethylhentriacontanoate and propyl 6,20- and 6,30-trimethylhentriacontanoate. The hydrocarbon fraction consists of n-, monomethyl- and dimethylalkanes, containing a relatively high proportion of even-numbered carbon chain components. The abundance of even-numbered carbon chain length alkanes and odd-numbered carbon chain length fatty acyl groups, along with abundant methyl-branches suggest that the propionyl-CoA and its carboxylated product, methylmalonyl-CoA, play important roles in the biosynthesis of these unique waxes. Arch. Insect Biochem. Physiol. 36:295–314, 1997. © 1997 Wiley-Liss, Inc.     

Reaction of the trichloromethyl and halothane-derived peroxy radicals with unsaturated fatty acids: A pulse radiolysis study

The absolute rates of reaction of the trichloromethylperoxy radical, CCl₃OO, derived from carbon tetrachloride and the halothane peroxy radical, CF₃CHClOO, with oleic, linoleic, linolenic and arachidonic acids have been determined using the fast reaction technique of pulse radiolysis. In general, the rates of reaction of the radical derived from carbon tetrachloride are approximately five times greater than those for the halothane related radical. In both cases the rate constant increases with increasing unsaturation of the fatty acid in agreement with the known greater susceptibility of polyunsaturated fatty acids to peroxidative decomposition.     

Biodegradation of 2-Chlorobenzoic Acid by Enterobacter cloacae: Growth Kinetics and Effect of Growth Conditions

Enterobacter cloacae was originally isolated from soil irrigated with wastewater on the basis of its ability to grow with linear alkylbenzene sulfonate (LAS) as the sole source for carbon and energy. The isolated bacterium was grown in batch cultures using a 2-chlorobenzoic acid (2-CBA)-containing minimal salt medium (MSM). 2-CBA was found to be the sole source for carbon and energy. 2-CBA inhibited the growth rate with a maximum concentration of 10 mM, after which no growth occurred. The Haldane model was used to predict the specific growth rate concentration data. 2-CBA degradation by starved E. cloaca cells was faster than that of nonstarved cells. The maximum growth rates on 2-CBA (2 mM) for starved and nonstarved cells reached only 0.34 and 0.28 h^?1, respectively. Glucose, lactose, sucrose, maltose, succinic acid, and mannitol as additional carbon sources at a fixed concentration (0.2%) caused the degradation rate of 2-CBA to proceed faster at ranges between 1.08- and 1.5-fold higher than that of the control. In contrast, using only fructose and sorbitol as the carbon sources showed catabolic repression of the degradation activity of 2-CBA by E. cloaca cells, although their cell mass was improved. All nitrogen sources supplied caused an increase in cell mass, whereas only lysine, alanine, glutamine, casein, and yeast extract caused a decrease in the degradation rate of 2-CBA, with a range between 12% and 28%. The activity of C120 could be detected in a crude extract of E. cloacae cells, indicating that the chloroaromatic ring fission occurs through the ortho pathways, not through the meta pathways. The data showed that different initial cell (inocula) densities did not affect the induction time for 2-CBA degradation. However, doubling the initial cell densities reduced the time required for reaching the complete degradation. 2-CBA degradation was optimally achieved at a 37°C incubation temperature and a pH of 7.5.     

Platform biochemicals for a biorenewable chemical industry

The chemical industry is currently reliant on a historically inexpensive, petroleum-based carbon feedstock that generates a small collection of platform chemicals from which highly efficient chemical conversions lead to the manufacture of a large variety of chemical products. Recently, a number of factors have coalesced to provide the impetus to explore alternative renewable sources of carbon. Here we discuss the potential impact on the chemical industry of shifting from non-renewable carbon sources to renewable carbon sources. This change to the manufacture of chemicals from biological carbon sources will provide an opportunity for the biological research community to contribute fundamental knowledge concerning carbon metabolism and its regulation. We discuss whether fundamental biological research into metabolic processes at a holistic level, made possible by completed genome sequences and integrated with detailed structural understanding of biocatalysts, can change the chemical industry from being dependent on fossil-carbon feedstocks to using biorenewable feedstocks. We illustrate this potential by discussing the prospect of building a platform technology based upon a concept of combinatorial biosynthesis, which would explore the enzymological flexibilities of polyketide biosynthesis.     

亚热带红壤区森林土壤剖面微生物残体碳分布及影响因素

土壤剖面中20cm以下土壤有机碳(SOC)储量占土壤剖面总SOC储量50%左右,由于土壤微生物残体碳(MRC)是稳定土壤碳库的重要来源,因此研究土壤剖面中MRC对SOC的贡献对于评估土壤碳储量具有重要意义。然而,目前关于MRC含量及其对SOC贡献的研究多数集中在土壤表层,在土壤剖面和母质中尚不清楚。选取江西省千烟洲亚热带典型森林红壤剖面,通过氨基糖与磷脂脂肪酸(PLFA)微生物标志物分析方法,分析红壤剖面和母质中MRC的影响机制及其对SOC贡献的分布特征。研究结果表明：(1)MRC含量随着土壤剖面深度增加而显著降低(P<0.05),在整个土壤剖面中,细菌MRC对SOC贡献为6%—12%,真菌MRC对SOC贡献为12%—36%,MRC对SOC贡献为18%—46%。从土壤表层至母质,真菌MRC对SOC贡献高于细菌MRC。(2)结构方程模型结果表明,在土壤剖面中,MRC含量主要受到微生物-PLFA含量、容重和溶解态有机碳含量的影响。研究量化了红壤剖面中MRC对SOC的贡献,表明在20cm以下土壤及母质中,微生物残体碳对红壤地区生态系统碳库具有重要贡献。     

Fatty Acid Oxidation and Ketogenesis by Astrocytes in Primary Culture

The oxidation of the fatty acids octanoate and palmitate to CO2 and the ketone bodies acetoacetate and D-(-)-3-hydroxybutyrate was examined in astrocytes that were prepared from cortex of 2-day-old rat brain and grown in primary culture to confluence. Accumulation of acetoacetate (by mass) in the culture medium of astrocytes incubated with octanoate (0.3-0.5 mM) was 50-90 nmol C2 units h-1 mg of protein-1. A similar rate was obtained using radiolabeled tracer methodology with [1-14C]octanoate as labeled substrate. The results from the radiolabeled tracer studies using [1-14C]- and [7-14C]octanoate and [1-14C]-, [13-14C]-, and [15-14C]palmitate indicated that a substantial proportion of the omega-terminal four-carbon unit of these fatty acids bypassed the beta-ketothiolase step of the beta-oxidation pathway and the 3-hydroxy-3-methylglutaryl (HMG)-CoA cycle of the classic ketogenic pathway. The [14C]acetoacetate formed from the 1-14C-labeled fatty acids, obligated to pass through the acetyl-CoA pool, contained 50% of the label at carbon 3 and 50% at carbon 1. By contrast, the [14C]acetoacetate formed from (omega-1)-labeled fatty acids contained 90% of the label at carbon 3 and 10% at carbon 1, whereas that formed from the (omega-3)-labeled fatty acid contained 20% of the label at carbon 3 and 80% at carbon 1. These results indicate that acetoacetate is primarily formed either by the action of 3-oxo-acid-CoA transferase (EC 2.8.3.5) or acetoacetyl-CoA deacylase (EC 3.1.2.11) or both on acetoacetyl-CoA and not by the action of the mitochondrial HMG-CoA cycle involving HMG-CoA lyase (EC 4.1.3.4), which was readily detected, and HMG-CoA synthase (EC 4.1.3.5), which was barely measurable.     

Distribution and disappearance of the radiolabeled carbon derived from L-arginine and taurine in the mouse

L-arginine and taurine are still in the center of physiological and pharmacological research. Although the fate of nitrogen of both compounds and of the ³⁵S-taurine is well-documented, the fate of the carbon skeleton has not been elucidated yet. We studied the organ distribution of ¹⁴C arginine and ¹⁴C taurine over time in the mouse using whole body autoradiography with densitometric image analysis. We describe different organ distribution patterns. Kidney, heart, lung, the Harderian gland, the central nervous system, intestine and testis showed a comparable pattern of arginine disappearance in contrast to rapid disappearance in the salivary gland and the accumulation pattern in bone and spleen. Data on ¹⁴C taurine of liver, kidneys, lung, testis and Harderian gland resembled the arginine pattern; Accumulation of taurine carbon was found in salivary gland, bone, intestine, heart and brain. Our studies challenge and demand further related studies to obtaining more information on the fate of the carbon skeleton of these amino acids.