Ecological effects of seaweed harvesting in the Gulf of California and Pacific Ocean off Baja California and California

The ecological effects of harvesting were investigated for two species, the giant kelp Macrocystis pyrifera and Eucheuma uncinatum, by using harvest records and aerial surveys that show yield changes and by using studies of recruitment, survivorship and community interactions. There were no ecological effects found for M. pyrifera harvested with contemporary methods, and there are no recommendations for changing current management practices for this species. It is recommended that E. uncinatum, which on occasion produces commercially significant standing crops, not be harvested unless special precautions are taken to leave some plants for regeneration of the harvested populations.     

Evidence for hydrothermal Archaea within the basaltic flanks of the East Pacific Rise

Little is known about the fluids or the microbial communities present within potentially vast hydrothermal reservoirs contained in still-hot volcanic ocean crust beneath the flanks of the mid-ocean ridge. During Alvin dives in 2002, organic material attached to basalt was collected at low, near-ambient temperatures from an abyssal hill fault scarp in 0.5 Ma lithosphere on the western ridge flank of the East Pacific Rise. Mineral analysis by X-ray diffractometry and scanning electron microscopy revealed high-temperature (> 110 degrees C) phases chalcopyrite (Cu(5)FeS(4)) and 1C pyrrhotite (Fe(1-x)S) within the fault scarp materials. A molecular survey of archaeal genes encoding 16S rRNA identified a diverse hyperthermophilic community, including groups within Crenarchaeota, Euryarchaeota, and Korarchaeota. We propose that the sulfide, metals and archaeal communities originated within a basalt-hosted subseafloor hydrothermal habitat beneath the East Pacific Rise ridge flank and were transported to the seafloor during a recent episode of hydrothermal venting from the abyssal hill fault. Additionally, inferred metabolisms from the fault scarp community suggest that an ecologically unique high-temperature archaeal biosphere may thrive beneath the young East Pacific Rise ridge flank and that abyssal hill fault scarps may present new opportunities for sampling for this largely unexplored microbial habitat.     

Distribution of silicoflagellates in plankton and core top samples from the Gulf of California

Plankton and surface sediment samples from the Gulf of California were examined to determine the present geographic distribution of silicoflagellate species in this area. Variations in the species composition of the silicoflagellate assemblage were found to be related to water mass distributions. Eight species were identified in these samples. Octactis pulchra is associated with high levels of primary productivity in the surface waters and is found in greatest abundance in the central Gulf of California. Dictyocha messanensis dominates the silicoflagellate assemblage in stations outside the Gulf of California and increases in relative abundance with decreasing amounts of Octactis pulchra. Dictyocha calida, Dictyocha sp. A, and Dictyocha sp. B are associated with equatorial waters and have the highest relative abundance near the mouth of the Gulf. Dictyocha epiodon and Distephanus speculum are associated with cold California Current Water, and Dictyocha epiodon is present in minor abundance in Gulf samples. Dictyocha sp. 2 has a patchy distribution with low relative abundance.     

Distribution and abundance of Syacium ovale larvae (Pleuronectiformes: Paralichthyidae) in the Gulf of California

The spawning season of the tonguefish Syacium ovale (Günter 1864) was determined by an analysis of the distribution of preflexion stage larvae in the Gulf of California. The larvae were collected during eight oceanographic surveys between 1984 and 1987. The spawning of this species starts in early summer and ends at the beginning of fall, with the highest reproductive activity in mid summer. The central and southern regions of the Gulf are the most important reproductive area. Spawning is associated with high sea surface temperatures and low plankton biomass, both of which are characteristics of the tropical current that invades the study area during summer.     

Geographical patterns in species richness of the benthic polychaetes in the continental shelf of the Gulf of California, Mexican Pacific

The present study is the first attempt to describe meso-scale patterns in the species richness of polychaetes along the Gulf of California, which stretches from about 23°N to 31°N. We examine herein the spatial changes in species distribution and explore the overlapping of species’ ranges towards the centre of the Gulf, to test whether the mid-domain effect (MDE) could explain an expected mid-domain peak in species richness. The faunal composition and the latitudinal range of 244 species of polychaetes recorded along the continental shelf of the Gulf of California were analysed in latitude bands of 1°. The species composition changes around the Gulf’s archipelago (~29°N), and the highest values of species richness are found at the 25° (197 species) and 26° (193 species) of latitude. Although the species richness pattern could be described by a parabolic shape, the regional trend was not strongly consistent with the peak of diversity at 27°N (176–191 species) predicted by the mid-domain effect: the random sorting of species’ ranges within spatial domain does not explain satisfactorily the geographical patterns of diversity. Nevertheless, a partial contribution of MDE to these natural patterns of diversity could be detected, and the increase in species richness towards middle latitudes was basically determined by species with distribution ranges larger than 6°. The low level of significance between the empirical species richness pattern and the mid-domain model prediction for polychaetes in the Gulf does not restrict their use as a model for exploring the randomness of the diversity patterns.     

Distribution of bathyal meiofauna in the region of the Subtropical Front, Chatham Rise, south-west Pacific

Metazoan meiofauna was sampled along a temperate latitude transect (41-47°S 178°30′E) across the Chatham Rise, south-west Pacific, from water depths of 350-2600 m on three occasions (austral autumn 1997, spring 1997, summer 2000). Samples were collected using a multicorer and extracted on a 63-μm mesh. Meiofaunal density and biomass were negatively correlated with water depth, median grain-size and sediment calcium carbonate content, and positively correlated with sediment chlorophyll a. There were no significant relationships between meiofaunal abundance and biomass and measures of sediment organic matter and bacterial productivity and biomass, except in summer when bacterial and meiofaunal biomass were positively correlated. Vertical penetration of meiofauna into the sediment was related to sediment organic matter and sediment chloroplastic pigments. Variation in meiofaunal abundance at different spatial scales was examined at two sites: at 450 and 2300 m on the northern slope of the rise. At both sites, variation between subcores of a multicore (< 10-cm scale) was lower than that of multicores within a deployment (< 1-m scale). However, whilst the highest variance component at the shallow site was for multicores within a deployment, it was between multicore deployments (< 1-km scale) for the deep site. Meiofaunal density and biomass were generally higher on the southern slope of the rise than on the northern slope, a trend probably attributable to high productivity of the overlying Subtropical Front and the flux of more nutritious organic material to the sea floor.     

A New Archaeogastropod (Rhipidoglossa, Trochacea) from Hydrothermal Vents on the East Pacific Rise

Melanodrymia aurantiaca gen. et sp.n., a conispiral archaeogastropod of trochacean affinities, occurs on chimneys and stacks of polymetallic sulphide deposits at hydrothermal vents on the abyssal ocean floor at 21°N Latitude off Baja California, Mexico. The shell is unique in its combination of reflexed growth lines, strongly prosocline aperture, discordant sculpture, discoidal geometry and pattern of apertural angulations. The similarity in form with Paleozoic euomphalaceans and pleurotomariceans is considered superficial and the unusual shell form and simplification of shell microstructure are interpreted as evolutionary correlates of small size. The radula is unusual, but it shares many features with the rhipidoglossan radulae of four undescribed limpet-shaped species from hydrothermal vents on the East Pacific Rise. It is hypothesized that the adaptive radiation occurred in situ , late in the Tertiary or Quaternary, and from a coiled ancestor.     

Comparative phylogeography among hydrothermal vent species along the East Pacific Rise reveals vicariant processes and population expansion in the South

The use of sequence polymorphism from individual mitochondrial genes to infer past demography has recently proved controversial because of the recurrence of selective sweeps acting over genes and the need for unlinked multilocus data sets. However, comparative analyses using several species for one gene and/or multiple genes for one species can serve as a test for potential selective effects and clarify our understanding of historical demographic effects. This study compares nucleotide polymorphisms in mitochondrial cytochrome oxidase I across seven deep-sea hydrothermal vent species that live along the volcanically active East Pacific Rise. Approximate Bayesian Computation (ABC) method, developed to trace shared vicariant events across species pairs, indicates the occurrence of two across species divergence times, and suggests that the present geographical patterns of genetic differentiation may be explained by two periods of significant population isolation. The oldest period dates back 11.6 Ma and is associated with the vent limpet Lepetodrilus elevatus , while the most recent period of isolation is 1.3 Ma, which apparently affected all species examined and coincides with a transition zone across the equator. Moreover, significant negative Tajima's D and star-like networks were observed for all southern lineages, suggesting that these lineages experienced a concomitant demographic and geographical expansion about 100 000–300 000 generations ago. This expansion may have initiated from a wave of range expansions during the secondary colonization of new sites along the Southern East Pacific Rise (founder effects below the equator) or recurrent bottleneck events because of the increase of eruptive phases associated with the higher spreading rates of the ridge in this region.     

蓝藻的伪空泡及其对蓝藻在水体中垂直分布的调节

伪空泡广泛存在于浮游蓝藻中,其主要功能是为细胞提供浮力。具有伪空泡的蓝藻可通过浮力调节改变其在水柱中的位置,以适应水体中呈垂直方向分布的光照与营养的分离,从而有利于其从水体中获取有限的资源并最终成为优势种群。文章介绍了蓝藻伪空泡的物理化学特性和编码基因、蓝藻浮力调节机制及其研究方法。     

The Vertical Distribution and Diversity of Marine Bacteriophage at a Station off Southern California

Sixty-two bacteriophages were isolated on eight indigenous bacteria from a Pacific Ocean station spanning 887-m vertical depth, on two occasions between 1999 and 2000. On the basis of 16S rRNA sequences, six hosts were tentatively identified to be in the genus Vibrio and the other two were closely related to Altermonas macleodii (W9a) and Pseudoalteromonas spp. (W13a). Restriction fragment length polymorphism (RFLP) analysis of phage genomes using AccI and HapI showed that 16 phages infecting host C4a (Vibrio) displayed 14 unique RFLP patterns. However, identical phages infecting host C4b, C6a, and C6b (all Vibrio) were obtained from both the surface layer and the hypoxic zone at 850 m. Most phage isolates from the second year had a different RFLP pattern but shared genetic similarity to the phages infecting the same host from the previous year based on a hybridization study using phage genome probes. Cluster analysis of RFLP patterns and hybridization results also indicated that phages infecting the same or genetically related hosts, in general, shared higher degrees of homology in spite of the diverse RFLP patterns. Pulsed field gel electrophoresis (PFGE) analysis of native viral genomes indicated a range in genome size from less than 40 to 200 kb, and the dominant band shifted up by about 5-10 kb in the deep samples compared to the shallow ones. Hybridization of phage genome probes with total viral community DNA from various depths suggests these isolates, or at least some of their genes, represent a detectable portion of the natural viral community and were distributed throughout the water column. Thus, the results of this study demonstrated that the genetic diversity of bacteriophage in the ocean is far greater than that of their bacterial hosts. However, host range may have contributed to the evolution of the diverse phage population in the marine environment.     

New genus and species of brachyuran crab from the southern East Pacific Rise (Crustacea Decapoda Brachyura Bythograeidae)

A new genus and species of a brachyuran crab, Allograea tomentosa n. gen. and n. sp., of the family Bythograeidae, collected at a hydrothermal vent locality south of the Easter Microplate (31 degrees 09'S) on the southern East Pacific Rise, is described. The genus Allograea is distinguished by lacking modifications of the fronto-orbital region, and by the absence of coloured fields and setal patches on the carapace and chelipeds. The body and legs are smooth but densely covered by a brown tomentum, the eyestalks are not reduced, but the cornea is unfaceted and unpigmented. Comparison of mitochondrial DNA sequences among all known bythograeid genera confirms the novelty of this taxon.     

The Ecological Role of the Vaquita, Phocoena sinus, in the Ecosystem of the Northern Gulf of California

From an ecosystem management perspective, analysis of the functional roles of species is a challenge. It is valuable to determine which species are irreplaceable within a given community based on their contribution to the system’s organization. This study relates the emergent functional and structural indices of biological groups estimated from a trophic model of the Northern Gulf of California to identify the roles of these groups in the ecosystem context, with a particular focus on the role of the vaquita, an endemic porpoise in critically endangered status. The simulation of removing each group allowed the analysis of the removal’s functional effect on the ecosystem’s global attributes and organization (based on Ulanowicz’s ascendency concept). Groups from lower trophic levels (TL) were more related to complexity indicators, suggesting their contribution to the organization and structure of energy flows in the food web. Groups from intermediate TL had higher values of structural indexes, indicating their function in the control of flows throughout the network. The vaquita along with other marine mammals, aquatic birds, and some species of fish with a high TL contribute in a similar way to the order (for example, ascendency/capacity-of-development ratio) of the system, showing a relatively high value of ascendency (contribution of the group to the organization inherent to the ecosystem) and the change in ecosystem ascendency when they were removed. The vaquita, like marine and coastal birds, plays a small role in the ecosystem. But like them, it does contribute substantially to ecosystem organization. This study thus provides information potentially useful for management in understanding the species’ role and in reducing uncertainty in decision-making.     

Habitat associations in gastropod species at East Pacific Rise hydrothermal vents (9 degrees 50'N)

At deep-sea hydrothermal vents on the East Pacific Rise (9 degrees 50'N), distinct megafaunal assemblages are positioned along strong thermal and chemical gradients. We investigated the distribution of gastropod species to determine whether they associate with specific megafaunal zones and to determine the thermal boundaries of their habitats. Gastropods colonized a series of basalt blocks that were placed into three different zones characterized by vestimentiferan tubeworms, bivalves, and suspension-feeders, respectively. Additional gastropods were collected on selected blocks from higher temperature vestimentiferan habitat and from grab samples of alvinellid polychaetes. On the blocks, gastropod species clustered into a "Cool" group (Clypeosectus delectus, Eulepetopsis vitrea, Gorgoleptis spiralis, and Lepetodrilus ovalis) whose species tended to be most abundant in the suspension-feeder zone, and a "Warm" group (Lepetodrilus cristatus, L. elevatus, L. pustulosus, and Cyathermia naticoides) whose species all were significantly more abundant in the vestimentiferan zone than elsewhere. The temperature ranges of Cool species were generally lower than the ranges of Warm ones, although both groups were present at 3 to 6 degrees C; also present was Bathymargarites symplector, which clustered with neither group. Three additional species, Rhynchopelta concentrica, Neomphalus fretterae, and Nodopelta rigneae, co-occurred with Warm-group species on selected blocks from hotter habitats. Although a few species were found only in alvinellid collections, most species were not exclusive to a specific megafaunal zone. We propose that species in the Cool and Warm groups occupy specific microhabitats that are present in more than one zone.     

Vertical Distribution of Denitrification Potential,Denitrifying Bacteria,and Benzoate Utilization in Intertidal Microbial Mat Communities

Aspects of denitrification and benzoate degradation were studied in two estuarine microbial mat communities on the California coast by measuring the depth distributions of potential denitrification rates, genetic potential for denitrification, nitrate concentration, benzoate mineralization rates, total bacterial abundance, and abundance of a denitrifying strain (TBD-8b) isolated from one of the sites. Potential denitrification was detected in microbial mat cores from both Elkhorn Slough and Tomales Bay. Maximum denitrification rates were more than two orders of magnitude higher at Elkhorn Slough (3.14 mmol N m⁻² d⁻¹) than at Tomales Bay (0.02 mmol N m⁻² d⁻¹), and at both sites, the maximum rates occurred in the 0–2 mm depth interval. Ambient pore [NO₃+NO₂] was substantially higher at Elkhorn Slough than at Tomales Bay. Incorporation and mineralization of benzoate was maximal near the mat surface at Elkhorn Slough. The areal rate of benzoate utilization was 1045 nmol C m⁻² d⁻¹, which represented utilization of 70% of the added substrate in 24 h. Total bacterial and TBD-8b abundances were greatest near the surface at both Tomales Bay and Elkhorn Slough, and TBD-8b represented less than 0.2% of the total. Genetic potential for denitrification, quantified by hybridization with a nitrite reductase gene fragment, was present below the mat surface at average levels representing presence of the gene in approximately 10% of the total cells.     

Fish Communities and Their Associations with Environmental Variables, Lower San Joaquin River Drainage, California

Twenty sites in the lower San Joaquin River drainage, California, were sampled from 1993 to 1995 to characterize fish communities and their associations with measures of water quality and habitat quality. The feasibility of developing an Index of Biotic Integrity was assessed by evaluating four fish community metrics, including percentages of native fish, omnivorous fish, fish intolerant of environmental degradation, and fish with external anomalies. Of the thirty-one taxa of fish captured during the study, only 10 taxa were native to the drainage. Multivariate analyses of percentage data identified four site groups characterized by different groups of species. The distributions of fish species were related to specific conductance, gradient, and mean depth; however, specific conductance acted as a surrogate variable for a large group of correlated variables. Two of the fish community metrics – percentage of introduced fish and percentage of intolerant fish – appeared to be responsive to environmental quality but the responses of the other two metrics – percentage of omnivorous fish and percentage of fish with anomalies – were less direct. The conclusion of the study is that fish communities are responsive to environmental conditions, including conditions associated with human-caused disturbances, particularly agriculture and water development. The results suggest that changes in water management and water quality could result in changes in species distributions. Balancing the costs and benefits of such changes poses a considerable challenge to resource managers.     

Plankton response to physical forcing in the Gulf of California

Distinct increases in plankton productivity occur annually inthe Gulf of California and are related, at least in part, towind-driven changes in upper-ocean conditions. In particular,a rapid increase in plankton shell fluxes occurs in late fall(November), and is associated with a shift to northerly windsand cooling of surface temperatures that induce mixing of theupper ocean. The observed succession in the phytoplankton isattributed to this destabilization of surface waters and mayreflect the ability of different groups to rapond to varyingsurface water nutrient levels. The unraveling of such relationshipsbetween plankton production and hydrographic conditions is criticalto improving our ability to reconstruct quantitatively pastclimates.